MAAQFTTLLRSLPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFIT
NSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIAL
PRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVP
QAESPAMTPESNATPSLTPPSDTAGAPTTNSGIRPVVNPSAASPVFSFSP
AFLLALLGATFLKYYY
| Relationships |
|---|
| The polypeptide, XM_017362772.1, derives from mRNA, XM_017362772.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5J5A9A0 (AAI domain-containing protein {ECO:0000259|SMART:SM00499})
HSP 1 Score: 255.373 bits (651), Expect = 3.091e-84
Identity = 133/213 (62.44%), Postives = 165/213 (77.46%), Query Frame = 0
Query: 5 FTTLLRSLPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLTP--PSDTAGAPTTNSGIRPVVNPSAASPVFSFSPAFLLALLGATFLKYY 215
FT R +PALAIA++VLI+P GQI++ C+ SML+SFS C +F+TNST NGTSP++DCCN+LKS+ SNG DC+CLIV+GS FQ+PINRTLAI+LPRACNMPGVP+QCKA+ +P+PAPGP AL PT S G +P+ SP AS VP PA+ PE++ TP L P P+ + APTTNSGIRPV+ PSAA P SFSP+ LLA+ G LKYY
Sbjct: 4 FTAFPRLVPALAIALMVLIMPACGQISSPCTASMLTSFSPCMNFVTNSTINGTSPTADCCNALKSLASNGKDCMCLIVSGSASFQMPINRTLAISLPRACNMPGVPVQCKAAGAPIPAPGPVAL--APTKSTGAAPSPSPKASTVPTTVPPALAPEADTTPDLIPATPTVESEAPTTNSGIRPVLTPSAAKPSHSFSPSLLLAVFGVIVLKYY 214
Match: A0A2R6PK73 (AAI domain-containing protein {ECO:0000259|SMART:SM00499})
HSP 1 Score: 254.218 bits (648), Expect = 7.200e-84
Identity = 136/215 (63.26%), Postives = 162/215 (75.35%), Query Frame = 0
Query: 3 AQFTTLLRSLPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLTPPSDTAG--APTTNSGIRPVVNPSAASPVFSFSPAFLLALLGATFLKYY 215
A F L LP LAI + V++ PV+ QI C+ SM+S+FS C +++TNSTANGTSP+SDCCNSLKS+ SNGTDC+CLI TGS+PFQIPINRTLAI+LPRACNMPGVPLQCKAS++P+PAPGP ALG P +SP+A P A +P PE++ATP+LTPPS T G APT+NSGIRPVV PSAA P FSP+ LL L GA LKYY
Sbjct: 2 AAFQPSLSFLPTLAIVLAVVLFPVHAQIRAPCTASMISTFSPCMNYLTNSTANGTSPTSDCCNSLKSLMSNGTDCMCLIATGSIPFQIPINRTLAISLPRACNMPGVPLQCKASTAPIPAPGPIALG------PSLSPSA-------PAALTPTAPPEADATPALTPPSTTVGSEAPTSNSGIRPVVTPSAAEPSLGFSPSLLLTLFGAVVLKYY 203
Match: A0A6A6K619 (AAI domain-containing protein {ECO:0000259|SMART:SM00499})
HSP 1 Score: 252.292 bits (643), Expect = 6.400e-83
Identity = 140/216 (64.81%), Postives = 167/216 (77.31%), Query Frame = 0
Query: 5 FTTLLRSLPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGIS-PAASPSASGVPQAESPAMTPESNATPSLTPPSDTA--GAPTTNSGIRPVVNP--SAASPVFSFSPAFLLALLGATFLKYY 215
F R +P LAIA+IVLI P +GQINT C+PS LSSF+ C +F+TNS+ANGTSPS DCC+SLK++TSNG DCLCLI TGSVPFQIPINR+LAI+LPRACNM VP+QCKAS SP+PAPGPA+L GP+LSP +S PAASP AS VP+ + PES+ TP LTPPS T GAPT+ +G RPV+NP SAA +S SP+FLL +G LKYY
Sbjct: 4 FVPFSRMVPVLAIALIVLIFPAHGQINTPCTPSFLSSFAPCVNFLTNSSANGTSPSQDCCSSLKNLTSNGMDCLCLIFTGSVPFQIPINRSLAISLPRACNMQRVPVQCKASVSPIPAPGPASL--GPSLSPRVSPPAASPKASVVPEPTPSTLPPESSTTPVLTPPSPTVDTGAPTSTTGSRPVLNPPSSAAESSYSLSPSFLLFAIGFVVLKYY 217
Match: A0A4S4E2R9 (AAI domain-containing protein {ECO:0000259|SMART:SM00499})
HSP 1 Score: 250.366 bits (638), Expect = 2.768e-82
Identity = 139/217 (64.06%), Postives = 161/217 (74.19%), Query Frame = 0
Query: 3 AQFTTLLRSLPALAIAII-VLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLTPPSDTAG--APTTNSGIRPVVNPSAASPVFSFSPAFLLALLGATFLKYYY 216
A F T LR LP LAIA+I VLIVPV+ QI + C+ SM SS S C +FITNSTANGTSP++DCCNSL+S+TSNG CLCLI TGSVPFQIPINRT+AI+LPR C MP VP+QCKAS +P+PAPGP AL PTLSP + SP AS P SPA+ P+++ TP LTPPS T APT NSG RPV+ PS A+P +FSP LALL A LKYYY
Sbjct: 2 AIFVTFLRLLPTLAIALITVLIVPVHCQIQSTCTASMFSSVSPCMNFITNSTANGTSPTTDCCNSLRSLTSNGMACLCLIATGSVPFQIPINRTVAISLPRTCKMPRVPVQCKASVAPIPAPGPIAL--SPTLSPSAAAPLSPQASVAPNLVSPALAPKADTTPLLTPPSPTVASEAPTANSGSRPVLTPSVATPPHNFSPFLQLALLAAIVLKYYY 216
Match: A0A7J0GTT9 ((Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein {ECO:0000313|EMBL:GFZ14202.1}))
HSP 1 Score: 249.595 bits (636), Expect = 3.899e-82
Identity = 133/206 (64.56%), Postives = 158/206 (76.70%), Query Frame = 0
Query: 12 LPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLTPPSDTAG--APTTNSGIRPVVNPSAASPVFSFSPAFLLALLGATFLKYY 215
LP LAI + V++ PV+ QI C+ SM+S+FS C +++TNSTANGTSP+SDCCNSLKS+ SNGTDC+CLI TGS+PFQIPINRTLAI+LPRACNMPGVPLQCKAS +P+PAPGP ALG P+ SPSA P A +P PE++ATP+LTPPS T G APT+NSGIRPV+ PSAA P FSP+ LL L GA LKYY
Sbjct: 11 LPTLAIVLAVVLFPVHAQIRAPCTASMISTFSPCMNYLTNSTANGTSPTSDCCNSLKSLMSNGTDCMCLIATGSIPFQIPINRTLAISLPRACNMPGVPLQCKASIAPIPAPGPIALG----------PSLSPSA---PAALTPTAPPEADATPALTPPSTTVGSEAPTSNSGIRPVLTPSAAEPSLGFSPSLLLTLFGAVVLKYY 203
Match: A0A2I4DYD5 ((non-specific lipid-transfer protein-like protein At2g13820 {ECO:0000313|RefSeq:XP_018812157.1}))
HSP 1 Score: 248.825 bits (634), Expect = 1.278e-81
Identity = 133/210 (63.33%), Postives = 164/210 (78.10%), Query Frame = 0
Query: 10 RSLPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLTPPSDTAG--APTTNSGIRPVVNPSAASPVFSFSPAFLLALLGA-TFLKYYY 216
R +P LA+ ++VLI+PVYGQI T C+ SM+SSF+ C F+TNSTANGTSPS++CCNSLKS+TS G DCLCLIVTG+VPF +PINR+LAI+LPRACNMPGVPLQCKAS +P+PAPGP +L PT SPG+SP SP AS VP+ +PA P+S+ TP LTPPS T APT +G RPV+ PSAA P S SP+F+L +LG + L YY+
Sbjct: 9 RIVPILAM-VVVLIIPVYGQIGTPCNTSMISSFTPCLRFVTNSTANGTSPSANCCNSLKSLTSGGKDCLCLIVTGNVPFPVPINRSLAISLPRACNMPGVPLQCKASGAPIPAPGPVSL--EPTPSPGLSPTPSPKASSVPEPTTPAQAPQSDTTPVLTPPSPTVDSEAPTATTGSRPVLTPSAAMPSHSLSPSFMLLVLGVNSVLNYYW 215
Match: A0A7J7GQS4 (AAI domain-containing protein {ECO:0000259|SMART:SM00499})
HSP 1 Score: 242.662 bits (618), Expect = 2.767e-79
Identity = 133/216 (61.57%), Postives = 163/216 (75.46%), Query Frame = 0
Query: 3 AQFTTLLRSLPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLT--PPSDTAGAPTTNSGIRPVVNPSAASPVFSFSPAFLLALLGATFLKYYY 216
A F R LP LAIA+ VL + V GQ+ + C+ SMLS+F+SC +FITNSTANGT+P+ CCNSLKS+ SNGT CLCLI TGSVPFQIPINRTLAI+LPRACNMPGVPL+C +S++P+PAPGP A PT+SPG +P+ SP+ S VP SPA+ P ++ T LT PP+ + APT+NSGIRPVV PSA P SFS + L+AL GA LKY+Y
Sbjct: 2 AVFKHFSRFLPFLAIALAVLTITVRGQVQSPCTASMLSTFTSCMNFITNSTANGTTPTPACCNSLKSLMSNGTGCLCLIATGSVPFQIPINRTLAISLPRACNMPGVPLKCNSSAAPIPAPGPIAF--SPTVSPG-APSLSPTGSTVPTPVSPALAPGTDTTSDLTPSPPTVASDAPTSNSGIRPVVTPSATGPSHSFSLSLLMALFGAMALKYFY 214
Match: A0A2I4G5L9 ((non-specific lipid-transfer protein-like protein At2g13820 {ECO:0000313|RefSeq:XP_018839193.1}))
HSP 1 Score: 240.35 bits (612), Expect = 2.041e-78
Identity = 127/192 (66.15%), Postives = 158/192 (82.29%), Query Frame = 0
Query: 19 IIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLTP--PSDTAGAPTTNSGIRPVVNPSAASPVFSFSPAFLLALLG 208
++VLI+PV+GQI+T C+ S++SSF+ C + +TNSTANGTSPS+DCCNSLKS+TS G DCLCLIVTGSVPFQIPINR+LAI+LPRACNMPG+P+QCKAS++P+PAPGP +L GPTLSPG+SP SP AS VP+ SP PES+ TP LTP P+ + APT +G RPV+ PSAA P +S SP+FLL +LG
Sbjct: 17 VVVLIIPVHGQISTPCNASIISSFTPCMNLLTNSTANGTSPSADCCNSLKSLTSGGLDCLCLIVTGSVPFQIPINRSLAISLPRACNMPGIPVQCKASAAPIPAPGPFSL--GPTLSPGLSPTPSPKASSVPEPISPTRAPESDTTP-LTPLAPTVDSEAPTATTGSRPVLTPSAAIPSYSLSPSFLLLVLG 205
Match: A0A061EN01 ((Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative {ECO:0000313|EMBL:EOY05732.1}))
HSP 1 Score: 238.424 bits (607), Expect = 1.666e-77
Identity = 128/209 (61.24%), Postives = 159/209 (76.08%), Query Frame = 0
Query: 10 RSLPALAIAIIVLIVPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSS-PLPAPGPAALGQGPTLSPGISPAASPSASGVPQAESPAMTPESNATPSLTPPSDTAG--APTTNSGIRPVVNPSAASPVFSFSPAFLLALLGATFLKYY 215
R +P L +A+ L++PVYGQINT CSPSMLS+F+ C +F+ NSTANGTSP++DCC SL+++TS G DCLCLIVTGSVPFQIPINRTLAI+LPRACNMPGVP+QCKA++ P+PAPGP AL PTLSPG SP SP S VP+ A PE + TP+LTPPS TAG APT ++G RPV+ PS+A+P + FSP ++ L K +
Sbjct: 10 RLVPVLFVALTALMLPVYGQINTPCSPSMLSTFTPCINFLRNSTANGTSPTADCCKSLQTLTSGGRDCLCLIVTGSVPFQIPINRTLAISLPRACNMPGVPVQCKAAAGVPVPAPGPIAL--SPTLSPGASPTLSPKGSLVPEPTPSAEAPEFDTTPALTPPSSTAGSEAPTASTGSRPVLTPSSANPAYCFSPFLVVFALSFVIFKSF 216
Match: A0A067KZ52 (AAI domain-containing protein {ECO:0000259|SMART:SM00499})
HSP 1 Score: 235.343 bits (599), Expect = 2.854e-76
Identity = 138/216 (63.89%), Postives = 164/216 (75.93%), Query Frame = 0
Query: 5 FTTLLRSLPALAIAIIVLI-VPVYGQINTACSPSMLSSFSSCASFITNSTANGTSPSSDCCNSLKSITSNGTDCLCLIVTGSVPFQIPINRTLAIALPRACNMPGVPLQCKASSSPLPAPGPAALGQGPTLSPGISPAASPS-ASGVPQAESPAMTPESNATPSLTPPSDTA--GAPTTNSGIRPVVN-PSAASPVFSFSPAFLLALLGATFLKYY 215
F + R L LAIA+IVLI P GQI+T C+PSMLS+FS C +F+TNS++NGTSPS CC+SLK++TSNG DC CLI TGSVPFQIPINR+LAI+LPRACNMPGVPLQCKA+ SP+PA GPA+L GPTLSP ISP+ASP AS VP+ A+ PES+ TP L PPS T GAPT+ +G RPV+ PSAA SFSP+ L+ LG LKYY
Sbjct: 4 FRPVSRMLAILAIALIVLINFPADGQISTPCTPSMLSTFSPCMNFLTNSSSNGTSPSQQCCSSLKNLTSNGVDCFCLIATGSVPFQIPINRSLAISLPRACNMPGVPLQCKATGSPVPASGPASL--GPTLSPRISPSASPKGASVVPEPTPSAIPPESSTTPVLPPPSTTVGTGAPTSTTGSRPVLTPPSAAVSSHSFSPSLLIFALGFVTLKYY 217
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5A9A0 | E-Value: 3.091e-84, PID: 62.44 | AAI domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A2R6PK73 | E-Value: 7.200e-84, PID: 63.26 | AAI domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A6A6K619 | E-Value: 6.400e-83, PID: 64.81 | AAI domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A4S4E2R9 | E-Value: 2.768e-82, PID: 64.06 | AAI domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A7J0GTT9 | E-Value: 3.899e-82, PID: 64.56 | (Bifunctional inhibitor/lipid-transfer protein/see... [more] |
| A0A2I4DYD5 | E-Value: 1.278e-81, PID: 63.33 | (non-specific lipid-transfer protein-like protein ... [more] |
| A0A7J7GQS4 | E-Value: 2.767e-79, PID: 61.57 | AAI domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A2I4G5L9 | E-Value: 2.041e-78, PID: 66.15 | (non-specific lipid-transfer protein-like protein ... [more] |
| A0A061EN01 | E-Value: 1.666e-77, PID: 61.24 | (Bifunctional inhibitor/lipid-transfer protein/see... [more] |
| A0A067KZ52 | E-Value: 2.854e-76, PID: 63.89 | AAI domain-containing protein {ECO:0000259|SMART:S... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |