Resource Type:
Polypeptide
Name:
XM_017363429.1
Identifier:
XM_017363429.1-protein
Sequence:
MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSG
ALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDS
TTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTS
FKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCP
RAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSG
SNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVE
SPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTEKW
Sequence Length:
343
Sequence Checksum:
6f505a769d81261b5d2713a419b7a7d0
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363429.1, derives from mRNA, XM_017363429.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A650E692 ((WRKY transcription factor 4X {ECO:0000313|EMBL:QGT40757.1}) (Fragment))
HSP 1 Score: 438.343 bits (1126), Expect = 2.514e-152
Identity = 241/348 (69.25%), Postives = 273/348 (78.45%), Query Frame = 0
Match: A0A650E692 ((WRKY transcription factor 4X {ECO:0000313|EMBL:QGT40757.1}) (Fragment))
HSP 1 Score: 438.343 bits (1126), Expect = 2.514e-152
Identity = 241/348 (69.25%), Postives = 273/348 (78.45%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHD-QSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRK---TTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAR---EEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTE 341
M+YT +V+TSLDLN NP QLF P K E QS+FIDFG+ T S+ + SGAL EEL RV+AENKKLTEMLTV+CENYNALRSNLMEY+++NP+ TTTD T S++KRK TT INN N AAAA A G N +ES SS+ED SFKK + EE I+ KISRVY RSE SDTT L+VKDGYQWRKYGQKVTRDNP PRAYFKCSFAPTCPVKKKVQRS+EDQSILVATYEGEHNHPHP+KVEAN+S SNR A+ P S SL +S P TITLDLTKS KSN+DA KS ++ESPEFQQFL+D MASSLTKDPSFKAALAAAISG+IL+ NQT+
Sbjct: 1 MDYTTFVDTSLDLNTNPLQLFTETP-KQEMQSNFIDFGMKTVSVKQEISSGALTEELKRVSAENKKLTEMLTVVCENYNALRSNLMEYIDKNPQPTTTD--TASTRKRKISTTTSCMINNKVNSDQAAAAAAAAGFGNN---SESCSSDEDNNSFKKFKPREEEMIKDKISRVYVRSEASDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSIEDQSILVATYEGEHNHPHPSKVEANSS-SNRCAA-----PCSTSLGSSGP---TITLDLTKS-KSNQDANKSFVRRIESPEFQQFLVDQMASSLTKDPSFKAALAAAISGKILQHNQTD 332
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q9FR29 ((Transcription factor WRKY4 {ECO:0000313|EMBL:AAG35658.1}))
HSP 1 Score: 426.017 bits (1094), Expect = 1.167e-147
Identity = 220/342 (64.33%), Postives = 268/342 (78.36%), Query Frame = 0
Match: Q9FR29 ((Transcription factor WRKY4 {ECO:0000313|EMBL:AAG35658.1}))
HSP 1 Score: 426.017 bits (1094), Expect = 1.167e-147
Identity = 220/342 (64.33%), Postives = 268/342 (78.36%), Query Frame = 0
Query: 1 MEYTN-YVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKS-NEDA-IKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQ 339
MEY++ +V+TSLDLNA P QLF+ P++ + Q SFIDFG+ T S+ + +GAL+EELNRVN ENKKLTEMLTVMCENYN LR+NLM+YM++NPE TT++KKRK+ E + + + + N ++ES S++ED S KK +EEH++AKISRVY RSE SDTTGL+VKDGYQWRKYGQKVTRDNP PRAYFKCS+APTCPVKKKVQRS++DQSILVATYEGEHNHPHPAK+E N+S SNR T +S+ S SLN S P T+TLD+TKS KS EDA K++ K++SPEFQQFL+D MASSLTKDPSFKAALAAAISG+IL+QNQ
Sbjct: 1 MEYSSSFVDTSLDLNAKPLQLFSETPIQ-QVQGSFIDFGMRT-SVKEENNGALIEELNRVNTENKKLTEMLTVMCENYNTLRNNLMDYMSKNPEPNL---ETTTTKKRKSVERS------STTSCMIKNNASSAKNNDNSESCSTDEDHNSTKKPKEEHVKAKISRVYFRSEASDTTGLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSYAPTCPVKKKVQRSIDDQSILVATYEGEHNHPHPAKLEPNDSSSNRCV-TPASLRCSTSLNLSAP---TLTLDMTKSKKSITEDANKKATTKKIDSPEFQQFLVDQMASSLTKDPSFKAALAAAISGKILQQNQ 327
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218WB59 ((probable WRKY transcription factor 40 {ECO:0000313|RefSeq:XP_031385680.1}))
HSP 1 Score: 390.578 bits (1002), Expect = 8.921e-134
Identity = 213/346 (61.56%), Postives = 258/346 (74.57%), Query Frame = 0
Match: A0A218WB59 ((probable WRKY transcription factor 40 {ECO:0000313|RefSeq:XP_031385680.1}))
HSP 1 Score: 390.578 bits (1002), Expect = 8.921e-134
Identity = 213/346 (61.56%), Postives = 258/346 (74.57%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANP-RQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSA-PKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQI-LRQNQTEKW 343
MEY++++NTSLDLN P R L + P K EA+S F++ S+ +++GAL+EELNRV+AEN+KLT+MLTV+CENYNALRS +MEYM++N D S+ S RK +I+NN+ A GA+V ++ S SS D S K REE I AKISR+Y R+EPSDT+ L+VKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQS+LVATYEGEHNHP P++ + SGS R +TL SVP S +LN+S P TITLDLTKS SNE IK+ PKVESPEFQ+FL++ MASSLTKDPSF +ALAAAISG+I L Q+ TEKW
Sbjct: 1 MEYSSWINTSLDLNIKPLRLLDDAPPPKKEAESDFMELAGRKVSV-KEETGALMEELNRVSAENRKLTQMLTVVCENYNALRSQVMEYMSKN-----ADKSSDLSPSRKRKSESISNND--------ANNYGAMV--ANGTSESSSTDDDSSKNPREEKITAKISRMYVRTEPSDTS-LIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSVLVATYEGEHNHPSPSQADQETSGSTRCVTTLGSVPCSTALNSSGP---TITLDLTKSKSSNE--IKTPPRPKVESPEFQRFLVEQMASSLTKDPSFTSALAAAISGRIQLHQSPTEKW 324
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TQF4 (WRKY domain-containing protein {ECO:0000259|PROSITE:PS50811})
HSP 1 Score: 384.8 bits (987), Expect = 1.064e-131
Identity = 218/343 (63.56%), Postives = 256/343 (74.64%), Query Frame = 0
Match: A0A068TQF4 (WRKY domain-containing protein {ECO:0000259|PROSITE:PS50811})
HSP 1 Score: 384.8 bits (987), Expect = 1.064e-131
Identity = 218/343 (63.56%), Postives = 256/343 (74.64%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTEKW 343
MEYT+ V+TSLDLN P +L + +K E QS+ I TT +++++GALVEELNRV+AENKKLTEMLTV+CENYNALR++LM+YM++NP D+ S+KRK+ T NNNN+ AA G S SS D S KK REEHI+AKISRVY R+EPSDT+ L+VKDGYQWRKYGQKVTRDNP PRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHP+K++ S R TL SVP S SL++S P TITLDLTK KS+E+ SS KV SPE QQ++I+ MASSLTKDPSFKAALAAAISG+ L+ NQTEKW
Sbjct: 1 MEYTSLVDTSLDLNIKPLRLLDD-GLKQEVQSNLIG---GTTVPVNEEAGALVEELNRVSAENKKLTEMLTVLCENYNALRNHLMDYMSKNPGT----DNNNGSRKRKSESTTTNNNNDTIIDAATNGP-----------SESSSSDEASCKKPREEHIKAKISRVYARTEPSDTS-LIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPSKMDQTPPNSTRCV-TLGSVPCSTSLSSSGP---TITLDLTKP-KSHEETRNSSTRKVNSPEIQQYIIEQMASSLTKDPSFKAALAAAISGKFLQHNQTEKW 318
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6X6N3 ((probable WRKY transcription factor 40 {ECO:0000313|RefSeq:XP_027121557.1, ECO:0000313|RefSeq:XP_027124622.1}))
HSP 1 Score: 381.333 bits (978), Expect = 2.758e-130
Identity = 215/343 (62.68%), Postives = 256/343 (74.64%), Query Frame = 0
Match: A0A6P6X6N3 ((probable WRKY transcription factor 40 {ECO:0000313|RefSeq:XP_027121557.1, ECO:0000313|RefSeq:XP_027124622.1}))
HSP 1 Score: 381.333 bits (978), Expect = 2.758e-130
Identity = 215/343 (62.68%), Postives = 256/343 (74.64%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTEKW 343
M+YT+ V+TSLDLN P +L + +K E QS+ I TT +++++GALVEELNRV+AENKKLTEMLTV+CENYNALR++LM+YM++NP D+ S+KRK+ T NNNN+ AA G S SS D S KK REEHI+AK+SRVY R+EPSDT+ L+VKDGYQWRKYGQKVTRDNP PRAYFKCSFAP+CPVKKKVQRSVEDQSILVATYEGEHNHPHP+K++ S S R TL VP S SL++S P TITLDLTK KS+E+ SS KV SPE QQ++I+ MASSLTKDPSFKAALAAAISG+ L+ NQTEKW
Sbjct: 1 MDYTSLVDTSLDLNIKPLRLLDD-GLKQEVQSNLIG---GTTVPVNEEAGALVEELNRVSAENKKLTEMLTVLCENYNALRNHLMDYMSKNPGT----DNNNGSRKRKSESTTTNNNNDTIIDAATNGP-----------SESSSSDEASCKKPREEHIKAKVSRVYARTEPSDTS-LIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPHPSKMDQTPSNSTRCV-TLGPVPCSTSLSSSGP---TITLDLTKP-KSHEETRNSSTRKVNSPEIQQYIIEQMASSLTKDPSFKAALAAAISGKFLQHNQTEKW 318
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AAG3 (WRKY domain-containing protein {ECO:0000259|PROSITE:PS50811})
HSP 1 Score: 379.407 bits (973), Expect = 1.043e-129
Identity = 212/344 (61.63%), Postives = 251/344 (72.97%), Query Frame = 0
Match: A0A5B7AAG3 (WRKY domain-containing protein {ECO:0000259|PROSITE:PS50811})
HSP 1 Score: 379.407 bits (973), Expect = 1.043e-129
Identity = 212/344 (61.63%), Postives = 251/344 (72.97%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQ-NQTEKW 343
MEYT+ ++TSLDLNANP + + P K E +S+FI GL T + ++ ALVEEL RV+AENKKLTEMLTV+CENYN LRS LM+YM++NP ++SKKRK A + N ++ S SS D S KK REEHI+AKISRVY R+E SDT+ L+VKDGYQWRKYGQKVTRDNPCPRAYFKCSFAP+CPVKKKVQRS EDQS+LVATYEGEHNHPHP K+EA G NR TL SVP SASL++S P TITLDLTK SN DA KS+ ++++PEFQQFL++ MASSLTKDPSFKAA+AAAISG+ L+ NQTEKW
Sbjct: 1 MEYTSLLDTSLDLNANPLRFLDEAPSK-EVESNFI--GLGTKMAVKEEGNALVEELKRVSAENKKLTEMLTVLCENYNTLRSQLMDYMSKNP-----GTELSASKKRK-----------------AESIITNNNNGTNGHSESSSSDEDSCKKPREEHIKAKISRVYVRTEASDTS-LVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSAEDQSVLVATYEGEHNHPHPGKLEA-TPGPNRCL-TLGSVPCSASLSSSGP---TITLDLTKPKSSN-DAKKSTQ-RIDTPEFQQFLVEQMASSLTKDPSFKAAVAAAISGKFLKHNNQTEKW 311
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A118K3J9 ((DNA-binding WRKY {ECO:0000313|EMBL:KVI06076.1}))
HSP 1 Score: 377.867 bits (969), Expect = 1.199e-128
Identity = 208/353 (58.92%), Postives = 262/353 (74.22%), Query Frame = 0
Match: A0A118K3J9 ((DNA-binding WRKY {ECO:0000313|EMBL:KVI06076.1}))
HSP 1 Score: 377.867 bits (969), Expect = 1.199e-128
Identity = 208/353 (58.92%), Postives = 262/353 (74.22%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSG-ALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREE---HIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTA--STLSSVPGSASLNTSRPVNNTITLDL----TKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTEKW 343
MEYT+ V+TSLDLN+NP +++P K E QS+FI+ GL + ++D++ LVEELNRV+AENKKLTEMLTVMCENYNAL+++L +YM++NP + ++++ ++ RK T+ NNNN ++ R ++ESSSS+ S KK R++ HI+AKISRV R+E SDT GLLVKDGYQWRKYGQKVTRDNP PRAYFKCS AP+CPVKKKVQRSVEDQSILVATYEGEHNHP+ +K E NSG +RT +TL SVP SASL +S P TITLDL +E+A +V++PEFQQFL+D MASSLTKDPSFKAALAAAISG+I++QNQ++KW
Sbjct: 1 MEYTSLVDTSLDLNSNPSHFLSLVP-KQEVQSNFIELGLKMPTHVNDKAADGLVEELNRVSAENKKLTEMLTVMCENYNALQNHLADYMSKNPAPSDSNNNNNNNNSRKRKPETLTNNNN-------------IIERGNSESSSSD--EDSCKKPRQQDQQHIKAKISRVCVRTEASDT-GLLVKDGYQWRKYGQKVTRDNPSPRAYFKCSHAPSCPVKKKVQRSVEDQSILVATYEGEHNHPNQSKQEQANSGLSRTVATATLGSVPCSASLGSSGP---TITLDLTNPPKPPTNPSEEAKVGGNRRVDTPEFQQFLVDQMASSLTKDPSFKAALAAAISGRIVQQNQSQKW 333
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HBV8 (WRKY domain-containing protein {ECO:0000259|PROSITE:PS50811})
HSP 1 Score: 376.326 bits (965), Expect = 1.887e-128
Identity = 208/343 (60.64%), Postives = 248/343 (72.30%), Query Frame = 0
Match: F6HBV8 (WRKY domain-containing protein {ECO:0000259|PROSITE:PS50811})
HSP 1 Score: 376.326 bits (965), Expect = 1.887e-128
Identity = 208/343 (60.64%), Postives = 248/343 (72.30%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTEKW 343
M+ +N++ SLDLNANP +LF+ P K E Q F GL SL +++G LVE+LN+VNAEN+KLTEMLTVMCENYNALRS++MEY+++NPE + SS+KRK A + + N S SS D SFKK REE I+AKISRVYTR++ SDT+ L+VKDGYQWRKYGQKVTRDNP PRAYFKCSFAP+CPVKKKVQRSVEDQSILVATYEGEHNHPHP ++E SG+NR+ + L SVP ++SL++S P ITLDLTK KSN DA S +SPE FL++ MASSLTKDPSFKAALAAAISG+IL NQTEKW
Sbjct: 3 MDSSNWMAASLDLNANPLRLFDDTP-KKEVQDDFTGLGLKVVSLKEEETGVLVEKLNQVNAENRKLTEMLTVMCENYNALRSHVMEYISKNPE-----RESPSSRKRK----------------AESSNNNSNNNGVVGNSESSSSDEDSFKKPREETIKAKISRVYTRTDASDTS-LVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPHPGRIEP-TSGANRSVN-LGSVPCASSLSSSGPA---ITLDLTKP-KSNSDAKAS-----KSPELHHFLVEQMASSLTKDPSFKAALAAAISGRILHHNQTEKW 311
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E7BTN1 ((WRKY transcription factor 4 {ECO:0000313|EMBL:ADU02585.1}))
HSP 1 Score: 375.941 bits (964), Expect = 2.618e-128
Identity = 208/343 (60.64%), Postives = 248/343 (72.30%), Query Frame = 0
Match: E7BTN1 ((WRKY transcription factor 4 {ECO:0000313|EMBL:ADU02585.1}))
HSP 1 Score: 375.941 bits (964), Expect = 2.618e-128
Identity = 208/343 (60.64%), Postives = 248/343 (72.30%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTEKW 343
M+ +N++ SLDLNANP +LF+ P K E Q F GL SL +++G LVE+LN+VNAEN+KLTEMLTVMCENYNALRS++MEY+++NPE + SS+KRK A + + N S SS D SFKK REE I+AKISRVYTR++ SDT+ L+VKDGYQWRKYGQKVTRDNP PRAYFKCSFAP+CPVKKKVQRSVEDQSILVATYEGEHNHPHP ++E SG+NR+ + L SVP ++SL++S P ITLDLTK KSN DA S +SPE FL++ MASSLTKDPSFKAALAAAISG+IL NQTEKW
Sbjct: 3 MDSSNWMAASLDLNANPLRLFDDTP-KKEVQDDFTGLGLKVVSLKEEETGVLVEKLNQVNAENRKLTEMLTVMCENYNALRSHVMEYISKNPE-----RESPSSRKRK----------------AESSNNNSNNNGVVGNSESSSSDEDSFKKPREETIKAKISRVYTRTDASDTS-LVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPHPGRIEP-TSGANRSVN-LGSVPCASSLSSSGPA---ITLDLTKP-KSNSDAKAS-----KSPELHHFLVEQMASSLTKDPSFKAALAAAISGRILHHNQTEKW 311
BLAST of XM_017363429.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438HLA2 ((Putative WRKY transcription factor 40 {ECO:0000313|EMBL:RVW85226.1}))
HSP 1 Score: 375.941 bits (964), Expect = 2.618e-128
Identity = 208/343 (60.64%), Postives = 248/343 (72.30%), Query Frame = 0
Match: A0A438HLA2 ((Putative WRKY transcription factor 40 {ECO:0000313|EMBL:RVW85226.1}))
HSP 1 Score: 375.941 bits (964), Expect = 2.618e-128
Identity = 208/343 (60.64%), Postives = 248/343 (72.30%), Query Frame = 0
Query: 1 MEYTNYVNTSLDLNANPRQLFNVLPVKHEAQSSFIDFGLSTTSLLHDQSGALVEELNRVNAENKKLTEMLTVMCENYNALRSNLMEYMNRNPEVTTTDDSTTSSKKRKTTENTINNNNNGSATAAAAGAVGAVVNRSSAESSSSEEDTTSFKKAREEHIQAKISRVYTRSEPSDTTGLLVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPHPAKVEANNSGSNRTASTLSSVPGSASLNTSRPVNNTITLDLTKSNKSNEDAIKSSAPKVESPEFQQFLIDHMASSLTKDPSFKAALAAAISGQILRQNQTEKW 343
M+ +N++ SLDLNANP +LF+ P K E Q F GL SL +++G LVE+LN+VNAEN+KLTEMLTVMCENYNALRS++MEY+++NPE + SS+KRK A + + N S SS D SFKK REE I+AKISRVYTR++ SDT+ L+VKDGYQWRKYGQKVTRDNP PRAYFKCSFAP+CPVKKKVQRSVEDQSILVATYEGEHNHPHP ++E SG+NR+ + L SVP ++SL++S P ITLDLTK KSN DA S +SPE FL++ MASSLTKDPSFKAALAAAISG+IL NQTEKW
Sbjct: 3 MDSSNWMAASLDLNANPLRLFDDTP-KKEVQDDFTGLGLKVVSLKEEETGVLVEKLNQVNAENRKLTEMLTVMCENYNALRSHVMEYISKNPE-----RESPSSRKRK----------------AESSNNNSNNNGVVGNSESSSSDEDSFKKPREETIKAKISRVYTRTDASDTS-LVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPHPGRIEP-TSGANRSVN-LGSVPCASSLSSSGPA---ITLDLTKP-KSNSDAKAS-----KSPELHHFLVEQMASSLTKDPSFKAALAAAISGRILHHNQTEKW 311
| Match Name | Stats | Description |
|---|---|---|
| A0A650E692 | E-Value: 2.514e-152, PID: 69.25 | (WRKY transcription factor 4X {ECO:0000313|EMBL:QG... [more] |
| Q9FR29 | E-Value: 1.167e-147, PID: 64.33 | (Transcription factor WRKY4 {ECO:0000313|EMBL:AAG3... [more] |
| A0A218WB59 | E-Value: 8.921e-134, PID: 61.56 | (probable WRKY transcription factor 40 {ECO:000031... [more] |
| A0A068TQF4 | E-Value: 1.064e-131, PID: 63.56 | WRKY domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A6P6X6N3 | E-Value: 2.758e-130, PID: 62.68 | (probable WRKY transcription factor 40 {ECO:000031... [more] |
| A0A5B7AAG3 | E-Value: 1.043e-129, PID: 61.63 | WRKY domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A118K3J9 | E-Value: 1.199e-128, PID: 58.92 | (DNA-binding WRKY {ECO:0000313|EMBL:KVI06076.1})[more] |
| F6HBV8 | E-Value: 1.887e-128, PID: 60.64 | WRKY domain-containing protein {ECO:0000259|PROSIT... [more] |
| E7BTN1 | E-Value: 2.618e-128, PID: 60.64 | (WRKY transcription factor 4 {ECO:0000313|EMBL:ADU... [more] |
| A0A438HLA2 | E-Value: 2.618e-128, PID: 60.64 | (Putative WRKY transcription factor 40 {ECO:000031... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |