Resource Type:
Polypeptide
Name:
XM_017364627.1
Identifier:
XM_017364627.1-protein
Sequence:
MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFFSPPQYAPP
WQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHH
QQQQQQQQQAVTIGSISSLHGDIKRENSSNSYHMFGSENNMNAQFQAAIE
PTWPQLMPVSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIG
GAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLL
EAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPG
QLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGAD
YWGPAALGGGGFH
Sequence Length:
363
Sequence Checksum:
a0a83f287d7637d3e14f585935650bc6
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364627.1, derives from mRNA, XM_017364627.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TBK3 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 429.098 bits (1102), Expect = 2.030e-148
Identity = 250/375 (66.67%), Postives = 282/375 (75.20%), Query Frame = 0
Match: D7TBK3 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 429.098 bits (1102), Expect = 2.030e-148
Identity = 250/375 (66.67%), Postives = 282/375 (75.20%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAP----FFSPPQYAPP--------WQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSSNSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGFH 363
MNRGVLQS+PVQQ+MA G+PNWWNIN+MRP PQ P P F PQY P W DN QE PESWSQL++GGL EEEKSG+SH Q KL+ WE+Q+L Q + + DIK+ENS++SY M+G + N FQA +PTW Q+MP SSPKSCVTS SNMLDFS++KAD +H QPDRSSE +ST+ GGA KKARVQ +S +QPTFKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG NMRQQ SVQGERNC+FP+DPGQLLND NG+KRK A DQ+ EE KKDL+SRGLCLVPVSCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGVLQSSPVQQMMA-GNPNWWNINSMRPPPQQPPPFLPSPSNLF--PQYTPTSSLPMSASWHDN-QELPESWSQLLLGGLVGEEEKSGMSHFQ-AKKLENWEDQVLHQ----------------ATNPPVVDIKQENSASSY-MYG---HGNEDFQAT-KPTWSQIMPASSPKSCVTSFSSNMLDFSSNKADVKHPQPDRSSECNSTATGGALKKARVQ--ASPTQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG-NMRQQ-PSSVQGERNCIFPEDPGQLLND-NGMKRKGASDQESHEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAL--GGGFR 342
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IHV2 ((Transcription factor bHLH68 {ECO:0000313|EMBL:RVW96270.1}))
HSP 1 Score: 429.098 bits (1102), Expect = 2.030e-148
Identity = 250/375 (66.67%), Postives = 282/375 (75.20%), Query Frame = 0
Match: A0A438IHV2 ((Transcription factor bHLH68 {ECO:0000313|EMBL:RVW96270.1}))
HSP 1 Score: 429.098 bits (1102), Expect = 2.030e-148
Identity = 250/375 (66.67%), Postives = 282/375 (75.20%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAP----FFSPPQYAPP--------WQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSSNSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGFH 363
MNRGVLQS+PVQQ+MA G+PNWWNIN+MRP PQ P P F PQY P W DN QE PESWSQL++GGL EEEKSG+SH Q KL+ WE+Q+L Q + + DIK+ENS++SY M+G + N FQA +PTW Q+MP SSPKSCVTS SNMLDFS++KAD +H QPDRSSE +ST+ GGA KKARVQ +S +QPTFKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG NMRQQ SVQGERNC+FP+DPGQLLND NG+KRK A DQ+ EE KKDL+SRGLCLVPVSCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGVLQSSPVQQMMA-GNPNWWNINSMRPPPQQPPPFLPSPSNLF--PQYTPTSSLPMSASWHDN-QELPESWSQLLLGGLVGEEEKSGMSHFQ-AKKLENWEDQVLHQ----------------ATNPPVVDIKQENSASSY-MYG---HGNEDFQAT-KPTWSQIMPASSPKSCVTSFSSNMLDFSSNKADVKHPQPDRSSECNSTATGGALKKARVQ--ASPTQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG-NMRQQ-PSSVQGERNCIFPEDPGQLLND-NGMKRKGASDQESHEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAL--GGGFR 342
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SR74 ((transcription factor bHLH68-like {ECO:0000313|RefSeq:XP_027068499.1}) (transcription factor bHLH68-like isoform X1 {ECO:0000313|RefSeq:XP_027072446.1}))
HSP 1 Score: 419.853 bits (1078), Expect = 8.774e-145
Identity = 242/379 (63.85%), Postives = 281/379 (74.14%), Query Frame = 0
Match: A0A6P6SR74 ((transcription factor bHLH68-like {ECO:0000313|RefSeq:XP_027068499.1}) (transcription factor bHLH68-like isoform X1 {ECO:0000313|RefSeq:XP_027072446.1}))
HSP 1 Score: 419.853 bits (1078), Expect = 8.774e-145
Identity = 242/379 (63.85%), Postives = 281/379 (74.14%), Query Frame = 0
Query: 1 MNRG-VLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFFSPP-----QY-----APPWQDNNQEAPESWSQLVMGGLADEEE---KSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSS--NSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGFH 363
MNRG +LQS+PVQQ+MA GSPNWWN+NNMRP P Q + F +PP QY W DN QE PESWSQL++GGL E++ KSGV H + L + WEEQLLQQ S++ +K+ENS+ +Y+M+G EN A+F AA + TW Q+MPVSSP SCVT+L SNMLDFS+SK+DGRH PDRSSE +ST+IGGA+KKARVQPSS+ Q +FKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALS PYLGS SG N+RQ Q S QGERNCLFP+DPGQLLND N +KRK A +Q +EE KKDL+SRGLCLVP+SCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGHLLQSSPVQQMMA-GSPNWWNLNNMRP---PSQQPSSFLAPPPNLFPQYMPPPPPSSWADN-QELPESWSQLLLGGLVAEDQDQNKSGVMHAKKTL--ENWEEQLLQQQPPNG-------------SNIVDHVKQENSAANGAYNMYGHEN---AEFHAA-KTTWSQMMPVSSPTSCVTTLSSNMLDFSSSKSDGRHPPPDRSSECNSTAIGGASKKARVQPSST--QSSFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLGSKSG-NVRQ--QQSAQGERNCLFPEDPGQLLND-NCMKRKAASEQDSEEEVKKDLRSRGLCLVPISCTLQVGSDNGADYWAPAL--GGGFR 347
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T248 ((transcription factor bHLH68-like isoform X1 {ECO:0000313|RefSeq:XP_027072394.1}))
HSP 1 Score: 419.853 bits (1078), Expect = 1.231e-144
Identity = 241/379 (63.59%), Postives = 280/379 (73.88%), Query Frame = 0
Match: A0A6P6T248 ((transcription factor bHLH68-like isoform X1 {ECO:0000313|RefSeq:XP_027072394.1}))
HSP 1 Score: 419.853 bits (1078), Expect = 1.231e-144
Identity = 241/379 (63.59%), Postives = 280/379 (73.88%), Query Frame = 0
Query: 1 MNRG-VLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFFSPPQYAPP----------WQDNNQEAPESWSQLVMGGLADEEE---KSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSS--NSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGFH 363
MNRG +LQS+PVQQ+MA GSPNWWN+NNMRP P Q + F +PP P W DN QE PESWSQL++GGL E++ KSGV H + L + WEEQLLQQ S++ +K+ENS+ +Y+M+G EN A+F AA + TW Q+MPVSSP SCVT+L SNMLDFS+SK+DGRH PDRSSE +ST+IGGA+KKARVQPSS+ Q +FKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALS PYLGS SG N+RQ Q S QGERNCLFP+DPGQLLND N +KRK A +Q +EE KKDL+SRGLCLVP+SCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGHLLQSSPVQQMMA-GSPNWWNLNNMRP---PSQQPSSFLAPPPNLFPQYMPPPPPSSWADN-QELPESWSQLLLGGLVAEDQDQNKSGVMHAKKTL--ENWEEQLLQQQPPNG-------------SNIVDHVKQENSAANGAYNMYGHEN---AEFHAA-KTTWSQMMPVSSPTSCVTTLSSNMLDFSSSKSDGRHPPPDRSSECNSTAIGGASKKARVQPSST--QSSFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLGSKSG-NVRQ--QQSAQGERNCLFPEDPGQLLND-NCMKRKAACEQDSEEEVKKDLRSRGLCLVPISCTLQVGSDNGADYWAPAL--GGGFR 347
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9H1B9 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 417.542 bits (1072), Expect = 9.293e-144
Identity = 241/377 (63.93%), Postives = 277/377 (73.47%), Query Frame = 0
Match: A0A2N9H1B9 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 417.542 bits (1072), Expect = 9.293e-144
Identity = 241/377 (63.93%), Postives = 277/377 (73.47%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFF-SP---PQYAPP-----------WQDNNQEAPESWSQLVMGGLADEEEKS-GVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSSNSY-HMFGSENNMNAQFQAAIEPTWPQLMPVSSPKS-CVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGG 359
MNRGVLQS+PVQQ+MA G+PNWWNINNMRP Q S+PF SP PQYAP W D+ QE PESWSQL++GGL EE+K G+S Q KL+ W EQL Q A + ++K+ENS+++Y + G+E+ FQA ++PTW Q+MP SSPKS CVTS +NMLDFS++K DGRH PDRSSE +S + GGA KKARVQPSS+ Q TFKVRKEKLGDRIT+LHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG NMRQQ Q SVQGERNCLFP+DPGQLLN+ N +KRK P+Q EE KKDL+SRGLCLVPVSCTLQV SDNGADYW PA GG
Sbjct: 1 MNRGVLQSSPVQQMMA-GNPNWWNINNMRP---QTQQSSPFLPSPNFYPQYAPTSSSTSSLAIPSWHDS-QELPESWSQLLLGGLVSEEDKVIGMSQFQAAKKLENWGEQLYSQ-----------AANASVV-----NVKQENSASNYVYGHGTED-----FQA-VKPTWSQVMPTSSPKSSCVTSFNNNMLDFSSNKVDGRHPPPDRSSECNSIANGGALKKARVQPSST--QTTFKVRKEKLGDRITSLHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG-NMRQQ-QQSVQGERNCLFPEDPGQLLNE-NCIKRKGGPEQDSHEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPALSGG 345
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UAT7 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 417.927 bits (1073), Expect = 1.132e-143
Identity = 242/390 (62.05%), Postives = 280/390 (71.79%), Query Frame = 0
Match: A0A2C9UAT7 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 417.927 bits (1073), Expect = 1.132e-143
Identity = 242/390 (62.05%), Postives = 280/390 (71.79%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFFSPP----QY-----------------APPWQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSSNSYHMFGSENNMNAQFQAAIEPTWPQLMP-VSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMR-----QQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKP-DEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGF 362
MNRGVLQS+P Q + AG+PNWWNINNMRP Q ++PF PP QY P W DN + PESWSQL+MGGL +E+ K ++H Q KL+ WEEQ+L H S +S D+K+ENS+NSY ++G + N FQAA +P+W Q++P SSPKSCVTS SNMLDFS +K DG+H PDRSSE +ST+ GGA KKARVQPSS+ Q TFKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGS +N+R QQ Q SVQGERNC+FP+DPGQLLND N +KRK A DQ+ +EE KKDL+SRGLCLVPVSCTLQV SDNGADYW P ALGGGGF
Sbjct: 1 MNRGVLQSSPPLQQIMAGNPNWWNINNMRPPTH--QQTSPFMPPPCLFPQYTPSSSSNSSSSTSSSLTVPSWHDNQDQLPESWSQLLMGGLVEEDNKGNMNHFQ-AKKLENWEEQMLHHH--------------ASSASAIVDVKQENSANSY-VYG---HANEDFQAA-KPSWSQIIPPASSPKSCVTSFSSNMLDFSTNKGDGKHPPPDRSSECNSTATGGALKKARVQPSST--QSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGS-SNIRQQQQQQQQQQSVQGERNCIFPEDPGQLLND-NCVKRKGASDQQDHNEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAP-ALGGGGF 363
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4E4U5 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 416.001 bits (1068), Expect = 8.537e-143
Identity = 243/403 (60.30%), Postives = 277/403 (68.73%), Query Frame = 0
Match: A0A4S4E4U5 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 416.001 bits (1068), Expect = 8.537e-143
Identity = 243/403 (60.30%), Postives = 277/403 (68.73%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFFSPPQYAPP---------------------------WQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSSNSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFK-------------VRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGFH 363
MNRGVLQS PVQQ M GSPNWWNIN+MRP QP S+PF PP P W DNNQE PESWSQ +GGL EE+KSG+SH+Q KL+ WE QLLQQ A S+ +IK+ENS+ + +++G N ++ AA +PTW Q+MP SSPKSCVTSLGSNML+FS++K DGRH PDRSSE +ST+ GG KKARVQPSS+ Q TFK VRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQ+QIEALSLPYLGSGSG NM QHQ SVQGERNCLFP+DPGQLLND N +K+K A +Q EE+ KDL+SRGLCLVP+SCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGVLQSLPVQQ-MLTGSPNWWNINHMRPPSQP---SSPFLIPPSNLFPQYTPPSAAPPPPPSSSSSSLLPLSSSSWHDNNQELPESWSQFFLGGLVGEEDKSGLSHVQGK-KLENWEAQLLQQ-----------ASNAPSV-----EIKQENSAANSYVYGLGN---GEYHAA-KPTWSQIMPASSPKSCVTSLGSNMLEFSSNKLDGRHPPPDRSSECNSTATGGVIKKARVQPSST--QSTFKDDDSLAILISSTQVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQNQIEALSLPYLGSGSG-NM-WQHQQSVQGERNCLFPEDPGQLLND-NCMKKKGAAEQDSHEES-KDLRSRGLCLVPISCTLQVGSDNGADYWAPAL--GGGFR 370
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2N807 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 413.305 bits (1061), Expect = 3.231e-142
Identity = 245/380 (64.47%), Postives = 274/380 (72.11%), Query Frame = 0
Match: A0A7N2N807 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 413.305 bits (1061), Expect = 3.231e-142
Identity = 245/380 (64.47%), Postives = 274/380 (72.11%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFF-SP---PQYAPP-----------WQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENS-SNSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKS-CVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGFH 363
MNRGVLQS+PVQQ+MA G+PN WNINNMRP QP S+PF SP PQYAP W D+ QE PESWSQL++GGL EE+K G+S Q KL+ W EQL Q A + ++K+ENS SN + GSE+ FQAA + TW Q+MP SSP S CVTS +NMLDFS+ K DGRH PD SSE +S + GGA KKARVQPSS+ QPTFKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG NMRQQ Q SVQGERNCLFP+DPGQLLN+ N +KRK P+Q EE KKDL+SRGLCLVPVSCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGVLQSSPVQQMMA-GNPNCWNINNMRPPTQP---SSPFLPSPIFFPQYAPTSSSSSSSSIPSWHDS-QELPESWSQLLLGGLVGEEDKDGMSQFQAAKKLENWGEQLYSQ-----------AANASVV-----NVKQENSVSNYVYGHGSED-----FQAA-KATWSQVMPASSPNSSCVTSFNNNMLDFSSIKVDGRHPPPDPSSECNSIANGGALKKARVQPSST--QPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG-NMRQQ-QQSVQGERNCLFPEDPGQLLNE-NCIKRKGGPEQDSHEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAL--GGGFR 346
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2QZ57 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 412.92 bits (1060), Expect = 5.551e-142
Identity = 246/383 (64.23%), Postives = 274/383 (71.54%), Query Frame = 0
Match: A0A7N2QZ57 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 412.92 bits (1060), Expect = 5.551e-142
Identity = 246/383 (64.23%), Postives = 274/383 (71.54%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWNINNMRPVPQPPQGSAPFF-SP---PQYAPP--------------WQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENS-SNSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKS-CVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPDEETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGFH 363
MNRGVLQS+PVQQ+MA G+PN WNINNMRP QP S+PF SP PQYAP W D+ QE PESWSQL++GGL EE+K G+S Q KL+ W EQL Q A + +IK+ENS SN + GSE+ FQAA + TW Q+MP SSP S CVTS +NMLDFS+ K DGRH PD SSE +S + GGA KKARVQPSS+ QPTFKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG NMRQQ Q SVQGERNCLFP+DPGQLLN+ N +KRK P+Q EE KKDL+SRGLCLVPVSCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGVLQSSPVQQMMA-GNPNCWNINNMRPPTQP---SSPFLPSPIFFPQYAPTSSSSSSSSSSSIPSWHDS-QELPESWSQLLLGGLVGEEDKDGMSQFQAAKKLENWGEQLYSQ-----------AANASVV-----NIKQENSVSNYVYGHGSED-----FQAA-KATWSQVMPASSPNSSCVTSFNNNMLDFSSIKVDGRHPPPDPSSECNSIANGGALKKARVQPSST--QPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG-NMRQQ-QQSVQGERNCLFPEDPGQLLNE-NCIKRKGGPEQDSHEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAL--GGGFR 349
BLAST of XM_017364627.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QHV4 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 412.149 bits (1058), Expect = 9.994e-142
Identity = 239/380 (62.89%), Postives = 277/380 (72.89%), Query Frame = 0
Match: A0A5N6QHV4 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})
HSP 1 Score: 412.149 bits (1058), Expect = 9.994e-142
Identity = 239/380 (62.89%), Postives = 277/380 (72.89%), Query Frame = 0
Query: 1 MNRGVLQSAPVQQVMAAGSPNWWN-INNMRPVPQPPQGSAPFFSP-----PQYAPP-----------WQDNNQEAPESWSQLVMGGLADEEEKSGVSHLQHVLKLDKWEEQLLQQHHQQQQQQQQQAVTIGSISSLHGDIKRENSSNSYHMFGSENNMNAQFQAAIEPTWPQLMPVSSPKSCVTSLGSNMLDFSNSKADGRHLQPDRSSESHSTSIGGAAKKARVQPSSSASQPTFKVRKEKLGDRITALHQMVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGTNMRQQHQHSVQGERNCLFPDDPGQLLNDNNGLKRKTAPDQKPD-EETKKDLKSRGLCLVPVSCTLQVESDNGADYWGPAALGGGGF 362
MNRGVLQS+PVQQ+MA G+PNWWN IN MRP P S+PF PQYAP W D+ ++ PESWSQL++GGL EE+K G+S Q +L+ WEEQLL Q A + ++K+E+ ++SY ++G + + FQAA +PTW ++ S PKSCVTS SNMLDFS++KADGRH PDRSSE +ST+ GGA KKARVQPSS+ QPTFKVRKEKLGDRITALHQ+VSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG NMRQ Q SVQGERNC+FP+DPGQLLND N +KRK A DQ+ EE KKDL+SRGLCLVPVSCTLQV SDNGADYW PA GGGF
Sbjct: 1 MNRGVLQSSPVQQMMA-GNPNWWNNINTMRP---PTHQSSPFLPTHSNCFPQYAPTSSSSSLPIPSNWHDSQEQLPESWSQLLLGGLVSEEDKVGMSQFQ-AKRLENWEEQLLSQ--------APNASVV--------NVKQEHPASSY-VYG--HGAHEDFQAA-KPTWSHVISASPPKSCVTSFSSNMLDFSSNKADGRHPPPDRSSECNSTATGGALKKARVQPSST--QPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSG-NMRQ--QQSVQGERNCIFPEDPGQLLND-NCIKRKGASDQQDSQEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAL--GGGF 347
| Match Name | Stats | Description |
|---|---|---|
| D7TBK3 | E-Value: 2.030e-148, PID: 66.67 | BHLH domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A438IHV2 | E-Value: 2.030e-148, PID: 66.67 | (Transcription factor bHLH68 {ECO:0000313|EMBL:RVW... [more] |
| A0A6P6SR74 | E-Value: 8.774e-145, PID: 63.85 | (transcription factor bHLH68-like {ECO:0000313|Ref... [more] |
| A0A6P6T248 | E-Value: 1.231e-144, PID: 63.59 | (transcription factor bHLH68-like isoform X1 {ECO:... [more] |
| A0A2N9H1B9 | E-Value: 9.293e-144, PID: 63.93 | BHLH domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A2C9UAT7 | E-Value: 1.132e-143, PID: 62.05 | BHLH domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A4S4E4U5 | E-Value: 8.537e-143, PID: 60.30 | BHLH domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A7N2N807 | E-Value: 3.231e-142, PID: 64.47 | BHLH domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A7N2QZ57 | E-Value: 5.551e-142, PID: 64.23 | BHLH domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A5N6QHV4 | E-Value: 9.994e-142, PID: 62.89 | BHLH domain-containing protein {ECO:0000259|PROSIT... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |