XM_017365301.1

Resource Type: 
Polypeptide
Name: 
XM_017365301.1
Identifier: 
XM_017365301.1-protein
Sequence: 
MALSSAKKNMILPLILVCFFCSPLDSYGDDYKIYQPDCLTIPATEFLSSL
KTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLL
TQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVAS
GLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGRE
FPEWVKASDRKKLLQVNGVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNR
TVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRS
ATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQD
TLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTIT
AQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTV
VMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGY
RVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV
Sequence Length: 
537
Sequence Checksum: 
bb0999a7e94a9f26c90a77a9803fe39e
View location in JBrowse: 
DCARv2_Chr8:5817323..5821293+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017365301.1, derives from mRNA, XM_017365301.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4L156 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}) (Fragment))

HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 351/511 (68.69%), Postives = 411/511 (80.43%), Query Frame = 0
 
Query:   30 DYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGRE---FPEWVKASDRKKLLQVNGVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            D    QP+CL +P   F SS+K+TIDVV+QV S+VS+F+  F DFRLSNAISDCLDLL+LS DEL  TLL +QNP N ++N TGNLSADL TWLS AL NQDTC+EGF+GT   V++LVA GL +++SL++ IL NV    +   G    H ++G        RKL+  R+   +P W +  DRK L  VNGV AD+VV  +G GNFT ++DAI A PDYST+R VIY+KKGVY EY+EI KKKWN+M+VGDGMDVT+ISGN +FI GWTTYRSATF VKG+GFIARDMTFENTAGP+ HQAVAFRSDSDLS L+RCA+RGYQDTLYAHS RQFYREC ITGTVDFIFGD   VFQ CQILARKGLPNQKNTITAQGRK+  E TGFSIQF NIS EP+++++   NST TYLGRPWKLYSRTV MQSY+SNAIRPEGWLEWN  FALDTL+YGEYMNYGPGAG+G+RVKWPG+R LN +++ + FTVAQF++GN WLPSTGVKYTAGLVV
Sbjct:   31 DSDFLQPECLKVPTGVFASSVKSTIDVVEQVASLVSKFAPAFGDFRLSNAISDCLDLLDLSADELTRTLLASQNP-NGKNNGTGNLSADLTTWLSGALGNQDTCIEGFEGTNRIVQNLVAGGLNQVTSLIKDILTNVAYGVNNDGGG---HPQQG--------RKLVSKRDAHSYPYWFRHEDRKMLQVVNGVSADVVVAKDGTGNFTNVTDAISAAPDYSTSRFVIYIKKGVYNEYIEIGKKKWNLMMVGDGMDVTVISGNQNFIDGWTTYRSATFAVKGQGFIARDMTFENTAGPQKHQAVAFRSDSDLSALFRCAIRGYQDTLYAHSLRQFYRECQITGTVDFIFGDGKVVFQNCQILARKGLPNQKNTITAQGRKDPTEATGFSIQFCNISGEPDLLASL--NSTSTYLGRPWKLYSRTVFMQSYMSNAIRPEGWLEWNGDFALDTLFYGEYMNYGPGAGIGSRVKWPGFRALNDSAQVSNFTVAQFIVGNLWLPSTGVKYTAGLVV 527
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BB14 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 356/533 (66.79%), Postives = 418/533 (78.42%), Query Frame = 0
 
Query:   14 LILVCFFCS-PLDSYGDDYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGRE----FPEWVKASDRKKLLQVN----GVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            L+L+C   + PL SY  D   +Q +CL +P +EFL S+K+TID+V+QVTS+VS+F+  F DFRLSNAISDCLDLL+LS DEL  TL  +QNP   ++NSTGNLSADLK +LS AL NQDTC EGFDGT G VK+LVA  L +++SLVR IL  V+    +       + RRG    +  +RKL    E    FP W+K  DR+ LLQ +    GVV D+VV  +G GNFT + DAI A P  ST R VIY+KKG+YKEYVEISKKKWN+M++GDG+DVTIISGN +FI GWTTYRSATF VKG+GFIARD+TFENTAGPE HQAVAFRSDSDLSVL+RCA+RGYQDTLYAHS RQFYR+C ITGTVDFIFGD  A+FQ CQILARKGL  QKNTITAQGRKE AETTGF+IQFSNIS EP+++++   NST TYLGRPWK YSRTV+MQSY+SN IRP+GWLEWN   +LDTLYY EY NYGPGAGLG RV WPG+ +LN +S+AN FTV+QFLLGNSWLP TGVKYTAGL V
Sbjct:   10 LVLLCITSTCPLKSYAVDEDFFQSECLQVPTSEFLGSVKSTIDIVRQVTSLVSKFASFFGDFRLSNAISDCLDLLDLSADELTWTLTASQNPK-GKNNSTGNLSADLKNYLSGALINQDTCTEGFDGTNGLVKNLVAGSLNQVTSLVRDILLMVRPVPKKNVFPSEANARRGKPWQFSRERKLTSNEEDNNSFPSWIKRKDRR-LLQASSPTKGVVTDVVVAHDGTGNFTRIKDAIDAAPQLSTKRFVIYIKKGIYKEYVEISKKKWNIMMIGDGIDVTIISGNRNFIDGWTTYRSATFAVKGQGFIARDITFENTAGPEKHQAVAFRSDSDLSVLFRCAVRGYQDTLYAHSMRQFYRDCTITGTVDFIFGDGTAIFQNCQILARKGLSQQKNTITAQGRKEIAETTGFTIQFSNISGEPDLLASL--NSTYTYLGRPWKTYSRTVIMQSYMSNVIRPQGWLEWNGNISLDTLYYAEYQNYGPGAGLGGRVNWPGFHLLNDSSQANNFTVSQFLLGNSWLPPTGVKYTAGLAV 538
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YM53 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 356/520 (68.46%), Postives = 420/520 (80.77%), Query Frame = 0
 
Query:   22 SPLDSYGDDYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGRE-FPEWVKASDRKKLLQVNG---VVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            +P  S G DY     +CL +P +EF+SSLK+TIDVVQQVTSIVS+F+  F DFRLSNAISDCLDLL+LS+DEL  TL  +QNP + +DNSTG+LSADL+TWLSAAL NQDTC+EGF+G+   V +LV+ GL +++SLV  +L  V+   +  + S   +   G  PG    RKL    + FP WVK +D ++LLQVNG   V AD VV  +G GNFT + DAI A PD++T R VIY+KKGVY+EYVEISKKK N+M++GDGMDVT+ISGN S I GWTTYRSATF VKG+GFIARD+TFENTAGP+ HQAVAFRSDSDLSV++RCA+RGYQDTLYAHS RQFYRECHITGTVDFIFGD+ AVFQ CQILARKGLPNQKNTITAQGRK+  E TGFSIQFSNIS EP+V+++   NST TYLGRPWK YSRTV MQSY+ +AIRPEGWLEWN +FALDTL YGEYMNYGPGA L +RVKWPG+  +N T++AN FTVAQF+LGNSWLPSTGVKYTAGL +
Sbjct:   19 APFGSSGPDY--LDAECLEVPVSEFVSSLKSTIDVVQQVTSIVSKFANAFGDFRLSNAISDCLDLLDLSSDELSWTLSASQNP-SGKDNSTGHLSADLRTWLSAALINQDTCMEGFEGSNSIVMNLVSGGLNQVTSLVHDVLTMVRPVPNTNTKS---NSEGGGHPG----RKLKNNSDHFPYWVKPNDHRRLLQVNGSAGVTADAVVAADGTGNFTRIMDAISAAPDHTTRRYVIYIKKGVYREYVEISKKKRNLMMIGDGMDVTVISGNRSVIDGWTTYRSATFAVKGQGFIARDITFENTAGPQKHQAVAFRSDSDLSVVFRCAIRGYQDTLYAHSMRQFYRECHITGTVDFIFGDSTAVFQNCQILARKGLPNQKNTITAQGRKDPTEPTGFSIQFSNISAEPDVLASV--NSTPTYLGRPWKEYSRTVFMQSYMGSAIRPEGWLEWNVSFALDTLVYGEYMNYGPGAALSSRVKWPGFHAINDTAQANNFTVAQFILGNSWLPSTGVKYTAGLAL 526
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7H5H2 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 351/535 (65.61%), Postives = 419/535 (78.32%), Query Frame = 0
 
Query:   11 ILPLILVCFFCS-PLDSYGDDYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGRE----FPEWVKASDRKKLLQVN---GVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            +L L+L+C   + PL SY  D   +Q +CL +P +EFL S+K+TI++V++VTS+VS+F+  F DFRLSNAISDCLDLL+LS DEL  TL  TQNP   ++NSTGNLSADLK +LS AL NQDTC+EGF+GT G VK+LVA  L ++SSLVR IL  V+    +       + +RG    +  +RKL    E    FP W+K  DR+ L   N   GV+ D+VV ++G GNFT + DAI A P  ST R VIY+KKG+YKEYVEISKKKWN+M++GDG+DVTIISGN +FI GWTTYRSATF VKG+GFIARD+TFENT+GPE HQAVAFRSDSDLSVL+RCA+RGYQDTLYAHS RQFYR+C ITGTVDFIFGD  A+FQ CQILARKGL  QKNTITAQGRKE AETTGF+IQF NIS EP+++++   NST TYLGRPWK YSRTV+MQSY+SN IRP+GWLEWN   +LDTLYY EY NYGPGAGLG RV WPG+ +LN +S+A+ FTVAQFLLGNSWLP TGVKYTAGL V
Sbjct:   10 VLILVLLCLTTTCPLISYAVDDNFFQSECLQVPTSEFLGSVKSTINIVREVTSLVSKFASFFGDFRLSNAISDCLDLLDLSADELTWTLTATQNPK-GKNNSTGNLSADLKNYLSGALINQDTCIEGFEGTNGLVKNLVAGNLNQVSSLVRNILLMVRPVSRKNVFPSEANAKRGKPWQFSRERKLTSNEEDHNLFPSWIKRKDRRLLQASNSTKGVITDVVVALDGTGNFTRIKDAIDAAPQLSTKRFVIYIKKGIYKEYVEISKKKWNIMMIGDGIDVTIISGNRNFIDGWTTYRSATFAVKGQGFIARDITFENTSGPEKHQAVAFRSDSDLSVLFRCAVRGYQDTLYAHSMRQFYRDCTITGTVDFIFGDGTAIFQNCQILARKGLSQQKNTITAQGRKEIAETTGFTIQFCNISGEPDLLTSL--NSTYTYLGRPWKTYSRTVIMQSYMSNVIRPQGWLEWNGNTSLDTLYYAEYQNYGPGAGLGGRVNWPGFHLLNDSSQASNFTVAQFLLGNSWLPPTGVKYTAGLAV 541
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8F5L9 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0
Identity = 347/534 (64.98%), Postives = 423/534 (79.21%), Query Frame = 0
 
Query:   11 ILPLILVCFFCSPLDSYGDDYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGRE----FPEWVKASDRKKLLQV---NGVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            ++ L+++C  C  ++   +D+  +Q +CL +P +EF+ S+K+TID ++QVTSIVS+F+  F DFRL NAISDCLDLLELS DEL  TL  +QNP   ++NSTGNLSADL+ +LS AL NQDTC+EGFDGT G VK+LVA  L +++ LVR IL  V+ P  + +   + + RRG+   W  +RKL   ++    +P W+K   R+ LLQ     GVVAD VV ++G GNFT + DAI+A P  ST + VIY+K+GVY EYVEISKKKWN+M++GDG+DVT+ISGN SFI GWTTYRSATF VKG+GFIARDMTFENTAGPE HQAVAFRSDSDLSVL+RCA+RGYQDTLYAHS RQFYR+C ITGTVDFIFGD+ A+FQ CQILARKGLP QKNTITAQGRKE AETTGFSIQFSNIS E +++++   NST TYLGRPWK YSRTV+MQSY+S+ IRP+GWLEWN   +LDTLYY EY NYGPGAG G R+KWPGY +LN +S+AN FTVAQF+LGNSWLP TG+KYTAGL V
Sbjct:   13 LIILVVLCVSCPLVNCGAEDF--FQSECLQVPISEFVGSVKSTIDTIRQVTSIVSKFANFFSDFRLFNAISDCLDLLELSADELTWTLTASQNPK-GKNNSTGNLSADLRNYLSGALINQDTCIEGFDGTNGLVKNLVAGSLNQVTLLVRDILYMVR-PAPKNAPQGQANDRRGNPWQWSRERKLTSNKQDSHSYPSWLKRKYRRWLLQAAPTKGVVADAVVALDGTGNFTRIKDAIEAAPQLSTKKFVIYIKRGVYNEYVEISKKKWNIMMIGDGIDVTVISGNRSFIDGWTTYRSATFAVKGQGFIARDMTFENTAGPEKHQAVAFRSDSDLSVLFRCAVRGYQDTLYAHSMRQFYRDCIITGTVDFIFGDSTAIFQNCQILARKGLPQQKNTITAQGRKETAETTGFSIQFSNISGEQDLLASL--NSTFTYLGRPWKTYSRTVIMQSYMSSVIRPQGWLEWNGNVSLDTLYYAEYENYGPGAGFGARIKWPGYHLLNDSSQANNFTVAQFILGNSWLPPTGIKYTAGLAV 540
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2Y6E1 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0
Identity = 347/534 (64.98%), Postives = 423/534 (79.21%), Query Frame = 0
 
Query:   11 ILPLILVCFFCSPLDSYGDDYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGRE----FPEWVKASDRKKLLQV---NGVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            ++ L+++C  C  ++   +D+  +Q +CL +P +EF+ S+K+TID ++QVTSIVS+F+  F DFRL NAISDCLDLLELS DEL  TL  +QNP   ++NSTGNLSADL+ +LS AL NQDTC+EGFDGT G VK+LVA  L +++ LVR IL  V+ P  + +   + + RRG+   W  +RKL   ++    +P W+K   R+ LLQ     GVVAD VV ++G GNFT + DAI+A P  ST + VIY+K+GVY EYVEISKKKWN+M++GDG+DVT+ISGN SFI GWTTYRSATF VKG+GFIARDMTFENTAGPE HQAVAFRSDSDLSVL+RCA+RGYQDTLYAHS RQFYR+C ITGTVDFIFGD+ A+FQ CQILARKGLP QKNTITAQGRKE AETTGFSIQFSNIS E +++++   NST TYLGRPWK YSRTV+MQSY+S+ IRP+GWLEWN   +LDTLYY EY NYGPGAG G R+KWPGY +LN +S+AN FTVAQF+LGNSWLP TG+KYTAGL V
Sbjct:   13 LIILVVLCVSCPLVNCGAEDF--FQSECLQVPISEFVGSVKSTIDTIRQVTSIVSKFANFFSDFRLFNAISDCLDLLELSADELTWTLTASQNPK-GKNNSTGNLSADLRNYLSGALINQDTCIEGFDGTNGLVKNLVAGSLNQVTLLVRDILYMVR-PAPKNAPQGQANDRRGNPWQWSRERKLTSNKQDSHSYPSWLKRKYRRWLLQAAPTKGVVADAVVALDGTGNFTRIKDAIEAAPQLSTKKFVIYIKRGVYNEYVEISKKKWNIMMIGDGIDVTVISGNRSFIDGWTTYRSATFAVKGQGFIARDMTFENTAGPEKHQAVAFRSDSDLSVLFRCAVRGYQDTLYAHSMRQFYRDCIITGTVDFIFGDSTAIFQNCQILARKGLPQQKNTITAQGRKETAETTGFSIQFSNISGEQDLLASL--NSTFTYLGRPWKTYSRTVIMQSYMSSVIRPQGWLEWNGNVSLDTLYYAEYENYGPGAGFGARIKWPGYHLLNDSSQANNFTVAQFILGNSWLPPTGIKYTAGLAV 540
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H803 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 712.22 bits (1837), Expect = 0.000e+0
Identity = 359/526 (68.25%), Postives = 420/526 (79.85%), Query Frame = 0
 
Query:   12 LPLILVCFFCSPLDSYGDDYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGREFPEWVKASDRKKLLQVNGVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            L L++V  FCS       D+ +   + L +PA+EF+ S+K+TID+++QV SIVSEF   F DFRLSNA+SDCLDL++LS D+L  TL  +QN  N +DNSTGN+ AD+KTWLS AL NQDTC EGFDGT G +K+LVA  L++++SL+  IL+NVK    +  G        G   G    RKL+   +FP WVK+ DR  L   NGVVAD VV  +G GNF T+ DAI A P+YST R VIY+KKGVYKEYVEISKKKWN+ML+GDGMDVT+ISGNH+FI GWTTYRSATF VKG+GFIARD+TFENTAGPE HQAVAFRSDSDLSVL+RCA+RGYQDTLYAHSQRQFYREC ITGTVDFIFGD A VFQ CQI ARKGLPNQKNTITAQGRKE+ E TGFS+QF NISVEP+V+     NST TYLGRPWKLYSRTV+MQSYISNAIRPEGWLEWN  FALDTL+YGEY NYGPG+ LG RVKWPGYRV N+++EA+ FTV+QF++GN+WLPSTGV+YTAGL V
Sbjct:    9 LFLVVVIVFCSFGSGKSSDF-VAPAEYLDVPASEFVGSVKSTIDIIRQVISIVSEFGGVFGDFRLSNAVSDCLDLMDLSVDQLSWTLSASQN-SNGKDNSTGNVGADMKTWLSGALINQDTCKEGFDGTNGILKNLVAGSLDQVTSLIYDILSNVKPIPSQGGGKGSGGGSGGGGGGRSGGRKLVADDKFPHWVKSHDRNLLQAPNGVVADAVVAADGTGNFATIKDAILAAPEYSTKRYVIYIKKGVYKEYVEISKKKWNIMLIGDGMDVTVISGNHNFIDGWTTYRSATFAVKGQGFIARDITFENTAGPEKHQAVAFRSDSDLSVLFRCAIRGYQDTLYAHSQRQFYRECIITGTVDFIFGDGAVVFQNCQIQARKGLPNQKNTITAQGRKESVENTGFSVQFCNISVEPDVL-----NSTQTYLGRPWKLYSRTVIMQSYISNAIRPEGWLEWNGDFALDTLFYGEYSNYGPGSVLGARVKWPGYRVFNSSAEASNFTVSQFIIGNTWLPSTGVRYTAGLQV 527
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AY66 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0
Identity = 352/519 (67.82%), Postives = 414/519 (79.77%), Query Frame = 0
 
Query:   22 SPLDSYGDDYKIYQPDCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGREFPEWVKASDRKKLLQVNG---VVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            +P  S G D+   + +CL +P +EF SSLK TIDVV+QVTSIV++F+  F DFRLSNAISDCLDLL+LS++EL  TL  +QNP N +DNSTGNLSADL+TWLSAAL NQDTC+EGF+G+   VK+LVA  L++++SLV  IL  V+   +  S   +     G   G    RKL   + FP WV  +DRK LLQ NG   V AD VV  +G GNFT + DAI A P+YST R VIY+KKG+Y+EYVEISKKKWN+M++G+GMDVT+ISGN SFI GWTTY SATF VKG+GF+ARD+TFENTAGP+ HQAVAFRSDSDLSVL+RCA+RGYQDTLYAHS RQFYREC ITGTVDFIFGD   VFQ CQILARKGLPNQKNTITAQGRK+ +E TGFSIQFSNIS EP+++++   NST TYLGRPWKLYSRTV MQSY+ +AIRPEGWLEWN  FALDTL+YGEY NYGPG+GL +R KWPGY  +N +S+AN FTVAQF+LGNSWLP TGVKYTAGL V
Sbjct:   19 APFCSSGSDF--LELECLKVPTSEFTSSLKNTIDVVRQVTSIVAKFANAFGDFRLSNAISDCLDLLDLSSEELSWTLSASQNP-NGKDNSTGNLSADLRTWLSAALINQDTCMEGFEGSNSIVKNLVAGSLDQVTSLVHDILTMVRQVPNTNS---KGGRSGGGNGGGHSVRKLKSNKHFPYWVGLNDRK-LLQANGNVGVSADAVVAADGTGNFTRIMDAISAAPEYSTRRYVIYIKKGLYREYVEISKKKWNLMMIGEGMDVTVISGNRSFIDGWTTYHSATFAVKGQGFVARDITFENTAGPQKHQAVAFRSDSDLSVLFRCAIRGYQDTLYAHSMRQFYRECQITGTVDFIFGDGTVVFQNCQILARKGLPNQKNTITAQGRKDPSEPTGFSIQFSNISAEPDLLASV--NSTPTYLGRPWKLYSRTVFMQSYMGSAIRPEGWLEWNGNFALDTLFYGEYTNYGPGSGLSSRAKWPGYHAMNDSSQANNFTVAQFILGNSWLPPTGVKYTAGLGV 528
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830BBJ6 ((Pectinesterase/pectinesterase inhibitor ppe8b {ECO:0000313|EMBL:GFP82144.1}))

HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 350/530 (66.04%), Postives = 418/530 (78.87%), Query Frame = 0
 
Query:   10 MILPLILVCFF-CSPLDSYGDDYKIYQP-DCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRKLIGGREFPEWVKASDRKKLLQVNGVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            M L L+L+C F C   D        + P + L IPA+EF+ S+++TID+V+QV S+VS+F+    DFRLSNA+SDCLDL++LS D+L  T+  +QNP N +DNSTGN+ AD+KTWLS AL+NQDTC EGF+GT G VK+LVA  L++I+SLV  IL+NVK+   +                    RKLIGG   P W+++ DR  L   NG +AD+VV  +G GNFT++ +AI A P++ST R VIY+K+GVYKEYVEISKKKWNVM++GDG++ T+ISGN +FI GWTTYRSATF VKG+GFIARD+TFENTAGPE HQAVAFRSDSDLSVL+RCA RGYQDTLYAHSQRQFYREC I+GTVDFIFGD A VFQ C+ILAR+GLPNQKNTITAQGRKE  E TGFSIQF NISVEPNVV     NST TYLGRPWKLYSRTV+MQSYISNAIRPEGWLEWN  FALDTL+YGEY NYGPGAGLG RVKWPGYRV N++++A+ FTV+QF+ GN WLPSTGV++TAGL V
Sbjct:    1 MFLVLLLICCFGCGKSD--------FDPSESLKIPASEFVGSVRSTIDIVRQVISMVSQFAGALGDFRLSNAVSDCLDLMDLSVDQLSWTISASQNP-NGKDNSTGNIGADMKTWLSGALTNQDTCNEGFEGTNGIVKNLVAGSLDQITSLVYDILSNVKTTPTKGGAKGSGGRS-------GGGRKLIGG---PGWLRSRDRNLLQAANGAMADVVVAADGTGNFTSIEEAIGAAPEHSTKRFVIYIKRGVYKEYVEISKKKWNVMMIGDGINATVISGNRNFIDGWTTYRSATFAVKGQGFIARDITFENTAGPEKHQAVAFRSDSDLSVLFRCAFRGYQDTLYAHSQRQFYRECQISGTVDFIFGDGAVVFQNCEILARQGLPNQKNTITAQGRKEPVENTGFSIQFCNISVEPNVV-----NSTQTYLGRPWKLYSRTVIMQSYISNAIRPEGWLEWNGDFALDTLFYGEYSNYGPGAGLGTRVKWPGYRVFNSSAQASNFTVSQFITGNEWLPSTGVRFTAGLGV 506
[Close]
BLAST of XM_017365301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T3F1 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 339/537 (63.13%), Postives = 415/537 (77.28%), Query Frame = 0
 
Query:   10 MILPLILVCFFCSPLDSYGDDYKIYQP-DCLTIPATEFLSSLKTTIDVVQQVTSIVSEFSRGFLDFRLSNAISDCLDLLELSTDELVSTLLLTQNPHNSQDNSTGNLSADLKTWLSAALSNQDTCVEGFDGTRGFVKSLVASGLEEISSLVRVILANVKSPHDRKSGSRRRHHRRGDMPGWMHKRK--------LIGGREFPEWVKASDRKKLLQVNGVVADLVVDVNGYGNFTTLSDAIKAVPDYSTNRTVIYVKKGVYKEYVEISKKKWNVMLVGDGMDVTIISGNHSFIGGWTTYRSATFGVKGRGFIARDMTFENTAGPENHQAVAFRSDSDLSVLYRCAMRGYQDTLYAHSQRQFYRECHITGTVDFIFGDAAAVFQKCQILARKGLPNQKNTITAQGRKEAAETTGFSIQFSNISVEPNVVSNSTGNSTLTYLGRPWKLYSRTVVMQSYISNAIRPEGWLEWNTTFALDTLYYGEYMNYGPGAGLGNRVKWPGYRVLNTTSEANAFTVAQFLLGNSWLPSTGVKYTAGLVV 537
            ++  L LV   C+   +       + P + L +PA+EF+ ++++TI+++ QV S+VS+F+ GF DFRL+NAISDCLDL++LS D+L  TL ++QNP N +DNSTGN+ AD+KTWLS AL NQDTC EG DGT   VK+L+A  L++++SLV  IL+NVK+               G                  +    +FP+W+++ DR  L   NG +AD+VV  +G GNFT++ DA++A P+YST R VIY+K+GVYKEYVEISKKKWN+M++GDG++VT+ISGN +FI GWTTYRSATF VKG+GFIARD+TFENTAGPE HQAVAFRSDSDLSVLYRC++RGYQDTLYAHSQRQFYREC ITGTVDFIFGD A VFQ CQI ARKGLPNQKNTITAQGRKE  E TGFSIQF NIS EP V      NST TYLGRPWKLYSRTV+MQSYISNA+RPEGWLEWN  FAL+TL+YGEYMNYGPG+GLG RVKWPGYRV N+++EAN FTV+QF++GN+WLPSTGV+YTAGL V
Sbjct:    6 LLKTLFLVVLLCASFTAGKSSSSDFVPSEYLGVPASEFVGTVRSTINIIGQVISMVSQFAGGFGDFRLTNAISDCLDLMDLSMDQLSWTLSVSQNP-NGKDNSTGNVGADMKTWLSGALINQDTCKEGLDGTNSIVKNLIAGSLDQVTSLVYDILSNVKTTPTTPPKGSPSSGPGGGKGSGSGGGGGGRGGRKLIADDHQFPKWLRSHDRNLLQAANGAMADVVVAADGTGNFTSIKDAVQAAPEYSTRRFVIYLKRGVYKEYVEISKKKWNIMMIGDGVNVTVISGNRNFIDGWTTYRSATFAVKGQGFIARDITFENTAGPEKHQAVAFRSDSDLSVLYRCSIRGYQDTLYAHSQRQFYRECIITGTVDFIFGDGAVVFQNCQIQARKGLPNQKNTITAQGRKEPVENTGFSIQFCNISAEPGV-----SNSTQTYLGRPWKLYSRTVIMQSYISNAVRPEGWLEWNGDFALNTLFYGEYMNYGPGSGLGARVKWPGYRVFNSSAEANNFTVSQFIIGNTWLPSTGVRYTAGLGV 536
Match NameStatsDescription
A0A6A4L156E-Value: 0.000e+0, PID: 68.69Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
M1BB14E-Value: 0.000e+0, PID: 66.79Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A5B6YM53E-Value: 0.000e+0, PID: 68.46Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A3Q7H5H2E-Value: 0.000e+0, PID: 65.61Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A1U8F5L9E-Value: 0.000e+0, PID: 64.98Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A2G2Y6E1E-Value: 0.000e+0, PID: 64.98Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A2G9H803E-Value: 0.000e+0, PID: 68.25Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A5J5AY66E-Value: 0.000e+0, PID: 67.82Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A830BBJ6E-Value: 0.000e+0, PID: 66.04(Pectinesterase/pectinesterase inhibitor ppe8b {EC... [more]
A0A6I9T3F1E-Value: 0.000e+0, PID: 63.13Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.