Resource Type:
Polypeptide
Name:
XM_017371886.1
Identifier:
XM_017371886.1-protein
Sequence:
MRMAGFASIPNDPTSSSPLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTA
DATHLGLVLNSSIEEVLHRRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGG
EGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKL
MLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYS
GPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHR
YLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLG
PAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRPS
Sequence Length:
333
Sequence Checksum:
9601787d797deeb5b88df89b5fe2db0d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371886.1, derives from mRNA, XM_017371886.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7E6R5 ((Rhomboid protein Hedne_RBL10 {ECO:0000313|EMBL:AIY60652.1}))
HSP 1 Score: 432.565 bits (1111), Expect = 2.764e-150
Identity = 229/342 (66.96%), Postives = 264/342 (77.19%), Query Frame = 0
Match: A0A0A7E6R5 ((Rhomboid protein Hedne_RBL10 {ECO:0000313|EMBL:AIY60652.1}))
HSP 1 Score: 432.565 bits (1111), Expect = 2.764e-150
Identity = 229/342 (66.96%), Postives = 264/342 (77.19%), Query Frame = 0
Query: 3 MAGFASIPNDPTSSSPLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLNSSIEEVL------------HRRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 332
M GF S+PN P SSS + VGP+P HLITTSA LRLGDV+R+RF A HLGLVL SSI+ + H R +G FLQ YDAWA SS L FF GEGS+NN S+++ SRKD FS RGLT L A+NV+VYLAQ+ATQGKLMLWGAKINSLID+GQLWRLVSSSFLHAN+GHL++NCYSLNSIGPTVEK SGPGRYMA+Y ISA+A+S MSYW CKAPAVGASGAIFGLVGSYAMF+ RHR L+N+ LQH+A +I+LN IGLMSKGIDNWGH GG +GGV SWL+GPAW+Y+ ++D+ RAFVDKAPIFSLIK KRRP
Sbjct: 1 MVGF-SVPNRP-SSSGFPLSTVGPSPFHLITTSAALRLGDVIRQRFIMHAHHLGLVLQSSIKNIFLFGHVPGLKGVWHGRTLQLEGLNFLQWPYDAWATTCSSGLFFFSGEGSRNNSGDRGKSKLDKSRKDPFSGRGLTNALFAINVLVYLAQLATQGKLMLWGAKINSLIDKGQLWRLVSSSFLHANMGHLMVNCYSLNSIGPTVEKISGPGRYMAVYIISAIASSAMSYWLCKAPAVGASGAIFGLVGSYAMFVLRHRNLNNDGIGDLQHIANVIVLNMGIGLMSKGIDNWGHLGGLLGGVATSWLIGPAWKYE--SHDQHRAFVDKAPIFSLIKTKRRP 338
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z2N8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694} (Fragment))
HSP 1 Score: 398.667 bits (1023), Expect = 9.895e-137
Identity = 191/324 (58.95%), Postives = 242/324 (74.69%), Query Frame = 0
Match: A0A5B6Z2N8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694} (Fragment))
HSP 1 Score: 398.667 bits (1023), Expect = 9.895e-137
Identity = 191/324 (58.95%), Postives = 242/324 (74.69%), Query Frame = 0
Query: 18 PLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLN-----------SSIEEVLHRRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKR 330
P +RVGPTP HLITT+A L LG L RRF + H+G + + S +++V H R F FLQ+SYDA++ SS L FFGGE ++NN S + +SR+ + + R T +L+A+NV+VY+AQ+ATQGKL+LWGAK+NSLID+GQLWR +SSFLHANIGHLL+NCYSLNS+GP+VE SGP RY+A+Y SA+A+S MSYW CKAPAVGASGAIFGLVGS+A+F+ RHR L S E LQH+AR+I+LN VIGL+SKGIDNWGH GG IGG SWL+GPAW Y+ L+ND RR FVD+APIFS+++PK+
Sbjct: 28 PFPISRVGPTPSHLITTAAALHLGHFLHRRFISHPLHVGFLHSCFKNISHLGHVSRLKDVWHERALQFKRINFLQQSYDAFSGTCSSCLYFFGGEENRNNSRDTGKSYLGTSRRISLNGRRWTNILLAINVLVYIAQIATQGKLLLWGAKVNSLIDKGQLWRFATSSFLHANIGHLLVNCYSLNSVGPSVENISGPRRYLAVYMTSAIASSAMSYWLCKAPAVGASGAIFGLVGSFAVFVLRHRDLVKSSREDLQHIARVIVLNMVIGLLSKGIDNWGHLGGLIGGAATSWLIGPAWRYESLSNDGRRVFVDRAPIFSIVRPKK 351
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z2X8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694} (Fragment))
HSP 1 Score: 392.889 bits (1008), Expect = 2.594e-134
Identity = 189/324 (58.33%), Postives = 240/324 (74.07%), Query Frame = 0
Match: A0A5B6Z2X8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694} (Fragment))
HSP 1 Score: 392.889 bits (1008), Expect = 2.594e-134
Identity = 189/324 (58.33%), Postives = 240/324 (74.07%), Query Frame = 0
Query: 18 PLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLN-----------SSIEEVLHRRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKR 330
P +RVGPTP HLITT+A L LG L RRF + H+G + + S +++V H R F FLQ+SYDA++ SS L FFGGE ++NN + +SR+ + + R T +L+A+NV+VY+AQ+ATQGKL+LWGAK+NSLID+GQLWR +SSFLHANIGHLL+NCYSLNS+GP+VE SGP RY+A+Y SA+A+S MSYW CKAPAVGASGAIFGLVGS+A+F+ RHR L S E LQH+AR+I+LN VIGL+SKGIDNWGH GG IGG SWL+GPAW Y+ L+ND RR FVD+APIFS+++ K+
Sbjct: 34 PFPISRVGPTPSHLITTAAALHLGHFLHRRFISHPLHVGFLHSCFKNISHLGHVSRLKDVWHERALQFKRINFLQQSYDAFSGTCSSCLYFFGGEENRNNSRDTGKLYLGTSRQISLNGRRWTNILLAINVLVYIAQIATQGKLLLWGAKVNSLIDKGQLWRFATSSFLHANIGHLLVNCYSLNSVGPSVENISGPRRYLAVYMTSAIASSAMSYWLCKAPAVGASGAIFGLVGSFAVFVLRHRDLVKSSREDLQHIARVIVLNMVIGLLSKGIDNWGHLGGLIGGAATSWLIGPAWRYESLSNDGRRVFVDRAPIFSIVRTKK 357
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B5V8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 389.037 bits (998), Expect = 3.028e-133
Identity = 189/326 (57.98%), Postives = 235/326 (72.09%), Query Frame = 0
Match: A0A5J5B5V8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 389.037 bits (998), Expect = 3.028e-133
Identity = 189/326 (57.98%), Postives = 235/326 (72.09%), Query Frame = 0
Query: 18 PLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLNS-----------SIEEVLHRRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 332
P + VGPTP HLITT+A LRLGD RRF + HLG + + +++V H R FLQRSYD ++A SS L FFG E S++N S + +SR+ +F+ R T +L+A+NV+VY+AQ+ATQGKL+LWGAKINSLID+GQLWR +SSFLHANIGHL++NCYSLNS+GP+VE SGP RY+A+Y SA+A+S MSYW CKAPAVGASGAIFGLVGS+A+F+ RHR L LQH+AR+I+LN VIGL+SKGIDNWGH GG IGG +W +GPAW Y+ L+ND RR FVDKAPIFS+I K P
Sbjct: 13 PFPISGVGPTPSHLITTAAALRLGDFFHRRFISHPLHLGFLHSCFKNISHLGHVPRLKDVCHERALQLKRNNFLQRSYDVFSATCSSCLYFFGEEESRDNSRNIGKSSLGTSRQISFNGRQWTDILLAINVLVYIAQVATQGKLLLWGAKINSLIDKGQLWRFATSSFLHANIGHLMVNCYSLNSVGPSVENISGPRRYLAVYITSAIASSAMSYWLCKAPAVGASGAIFGLVGSFAVFVLRHRDLVKSGRGDLQHIARVIVLNMVIGLLSKGIDNWGHLGGLIGGAATAWFIGPAWRYESLSNDGRRVFVDKAPIFSIIDTKGTP 338
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RDW1 ((RHOMBOID-like protein {ECO:0000313|EMBL:PSS26746.1}))
HSP 1 Score: 373.629 bits (958), Expect = 3.287e-127
Identity = 189/325 (58.15%), Postives = 237/325 (72.92%), Query Frame = 0
Match: A0A2R6RDW1 ((RHOMBOID-like protein {ECO:0000313|EMBL:PSS26746.1}))
HSP 1 Score: 373.629 bits (958), Expect = 3.287e-127
Identity = 189/325 (58.15%), Postives = 237/325 (72.92%), Query Frame = 0
Query: 13 PTSSSPLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTADAT-----HLGLVLNSSIEEVLHRRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 332
P+SSS +RVGPTP HLITT+A LRLG L RF ++ +LG V ++++ H F FL S DA +A SS FF GEGS+NN S + +SR+ + + RG T +L+AVNV+V++AQ+ATQGKL++WGAKINSLID GQLWRL +S+FLHANI HL++NCYSLNS+GPTVE SGP RY+A+YF SA+A+S SYWFCKAPAVGASGAIFGLVGS+A+F+ RHR L E L+H+A +I+LN VIGL+SKGIDNWGH GG +GG SWLLGPAW Y+ +ND R+ F D+APIF+LIK KR P
Sbjct: 15 PSSSS---ISRVGPTPAHLITTAASLRLGHFLHHRFLLQSSFKNIAYLGHV--PRLKDLWHETFIRFKRANFLHWSEDAASAACSSCTWFFSGEGSRNNPGHIGRSDLGTSRRISHNGRGWTNILLAVNVLVFIAQVATQGKLLVWGAKINSLIDEGQLWRLATSAFLHANITHLMVNCYSLNSVGPTVEAISGPRRYLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSFAVFVLRHRGLVRGGKEDLRHIAHVIVLNMVIGLLSKGIDNWGHLGGLVGGAATSWLLGPAWRYESTSNDGRKVFADRAPIFALIKTKRTP 334
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7E6G1 ((Rhomboid protein Ilepu_RBL10 {ECO:0000313|EMBL:AIY60664.1}))
HSP 1 Score: 368.622 bits (945), Expect = 3.946e-125
Identity = 187/331 (56.50%), Postives = 234/331 (70.69%), Query Frame = 0
Match: A0A0A7E6G1 ((Rhomboid protein Ilepu_RBL10 {ECO:0000313|EMBL:AIY60664.1}))
HSP 1 Score: 368.622 bits (945), Expect = 3.946e-125
Identity = 187/331 (56.50%), Postives = 234/331 (70.69%), Query Frame = 0
Query: 15 SSSPLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLNS------------SIEEVLHRRIHHFDGYIFLQRS-YDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 332
SS P + VGPT H IT++A LRLG L RRF ++ +LG++ +S +I++V H R F G FLQ S YDA A SS L FF GE S+N+ + ++SR+ + R T +L+A+NV+ Y+AQ ATQGKL WGAKINSLID+GQLWRL +SSFLHAN+GHL++NCYSLNS+GPTVE GP RY+A+Y ISAV S MSYWF KAPAVGASGAIFGLVGS+A+F+ RHR + +S LQH+AR+++LN IGL+S+GIDNWGH GG IGG ASW LGPAW Y+ L++D RR F D+APIFSLI KR P
Sbjct: 8 SSFPFPISAVGPTTTHFITSAAALRLGHFLHRRFISNRLYLGILSHSFFKNISPLRHVPAIKDVWHERALKFGGCNFLQWSLYDASFATCSSCLCFFSGEESRNDSTNIGKTHSDASRRVSSDGRQWTNILLAINVLAYIAQFATQGKLFYWGAKINSLIDKGQLWRLATSSFLHANLGHLMVNCYSLNSVGPTVENIGGPRRYLAVYIISAVTGSAMSYWFNKAPAVGASGAIFGLVGSFAVFVLRHRGMVKDSKGDLQHIARVLILNMGIGLISRGIDNWGHLGGLIGGAAASWFLGPAWRYEYLSSDGRRVFADRAPIFSLISRKRAP 338
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6ADJ2 ((RHOMBOID-like protein 10, chloroplastic {ECO:0000313|RefSeq:XP_022762883.1}))
HSP 1 Score: 353.214 bits (905), Expect = 5.953e-119
Identity = 181/337 (53.71%), Postives = 238/337 (70.62%), Query Frame = 0
Match: A0A6P6ADJ2 ((RHOMBOID-like protein 10, chloroplastic {ECO:0000313|RefSeq:XP_022762883.1}))
HSP 1 Score: 353.214 bits (905), Expect = 5.953e-119
Identity = 181/337 (53.71%), Postives = 238/337 (70.62%), Query Frame = 0
Query: 12 DPTSSSPLRFNRVGPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLNSSIEEVLH------------RRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSK----NNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 332
DP SS R VGPTP+H++ T+ LRLG +LR + LG +L SS +++ H +F Q S DA+ + SS L FF GE + N R+S+M +S +++F+RR T +LIA+NV++YLAQ+ATQGKL+LWGAKINSLID+GQ+WRL +SS LHANIGHL++NCYSLNSIGPTVE SGP R++A+Y SA++++ SYWFCKAPAVGASGAIFGLVGS A+F+ RHR + ++ + LQH+A++I +N VIGL+SKGIDNWGH GGF+GG SWLLGPAW+Y+ + +D RR F D+APIF LI KR+P
Sbjct: 17 DPLPSSSFR---VGPTPIHVLATATSLRLGHLLRHQL-----RLGFLLRSSFKKLSHLCNVPRLKDVWSETTSNFTEIDIFQFSNDAFTSSCSSYLCFFNGEEKRKELGNEGSDNRSSKMETSWRNSFNRRKWTNILIAINVLIYLAQLATQGKLLLWGAKINSLIDKGQIWRLATSSLLHANIGHLMVNCYSLNSIGPTVEHISGPRRFLAVYTASAISSAATSYWFCKAPAVGASGAIFGLVGSVAVFVMRHRGMIRDAKDDLQHIAQVIFINMVIGLISKGIDNWGHLGGFLGGAAMSWLLGPAWKYESMASDGRRIFSDRAPIFYLIDRKRKP 345
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7T014 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 348.591 bits (893), Expect = 2.216e-117
Identity = 182/330 (55.15%), Postives = 232/330 (70.30%), Query Frame = 0
Match: D7T014 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 348.591 bits (893), Expect = 2.216e-117
Identity = 182/330 (55.15%), Postives = 232/330 (70.30%), Query Frame = 0
Query: 17 SPLRF--NRVGPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLNSSIEEVLHR------------RIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 332
P RF ++VGPTP HLITT+A LRLG + R++ HLG L SS + + H + F G F D+++A SS L FFGGE ++ S + R+++ R T +LIA+NV+V++ Q ATQGKL+LWGAKINSLID+GQ WRL +SSFLHANIGHL++NC+SLNS+GPTVE SGP RY+A+YF SA+A+S MSYW CK PAVGASGAIFGLVGS A+F+ RHR L +S E LQH+AR+I+LN VIG +SKGIDNWGH GG +GG+ SWLLGPAW+Y+ L+ND RR F D+APIF L+ +R+P
Sbjct: 8 QPSRFPLSKVGPTPAHLITTAASLRLGHFIHRQYI----HLGFFLRSSFKRLAHLAHVPGLKNIWFGKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQWTNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFSLNSVGPTVENLSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMRHRGLVGDSKESLQHIARVIVLNMVIGCLSKGIDNWGHLGGLLGGLVTSWLLGPAWKYESLSNDGRRVFADRAPIFHLVNRRRKP 330
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8B121 ((RHOMBOID-like protein 10, chloroplastic {ECO:0000313|RefSeq:XP_010272793.1, ECO:0000313|RefSeq:XP_010272794.1}))
HSP 1 Score: 346.28 bits (887), Expect = 1.912e-116
Identity = 175/331 (52.87%), Postives = 229/331 (69.18%), Query Frame = 0
Match: A0A1U8B121 ((RHOMBOID-like protein 10, chloroplastic {ECO:0000313|RefSeq:XP_010272793.1, ECO:0000313|RefSeq:XP_010272794.1}))
HSP 1 Score: 346.28 bits (887), Expect = 1.912e-116
Identity = 175/331 (52.87%), Postives = 229/331 (69.18%), Query Frame = 0
Query: 17 SPLRF--NRVGPTPLHLITTSAGLRLGDVLRRRFTAD-ATHLGLVLNSSIEEVLHRRIHH--------------FDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKR 330
SP RF +R GPTP+HL+TT+A LRLGD+L + + L ++L SS + H H F G+ FL+ D+ + ++ S L FF + SK + S + + ++ + R T VL+A+N++VY+ Q+ATQGKL+LWGAKINSLID+GQLWRL +SSFLH N+GHL++NCYSLNS+GP +E SGP R++A+YF SA+A+S MSYWFCKAPAVGASGAIFGLVGS+AMF+ RHR L + LQ +A +I LN +IG++SKGIDNWGH GGF+GGV SWLLGPAW+YK +ND + F D APIF LI KR
Sbjct: 6 SPFRFPISRGGPTPVHLLTTAAALRLGDILHLQTRHHLESRLHVLLRSSFKGFSH--FGHVYGLKNAWLEGPLLFKGFCFLESPNDSLSTRFKSYLCFFSAKDSKTEFGDEGKSYLETPKRRPPNGRLWTNVLLALNILVYVVQIATQGKLLLWGAKINSLIDKGQLWRLATSSFLHGNVGHLMVNCYSLNSVGPMMENISGPRRFLAVYFTSAIASSAMSYWFCKAPAVGASGAIFGLVGSFAMFVLRHRNLYGGGNQELQQIANVIALNMMIGILSKGIDNWGHLGGFLGGVATSWLLGPAWKYKSRSNDGKLVFSDSAPIFYLIDRKR 334
BLAST of XM_017371886.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BNA1 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 345.51 bits (885), Expect = 5.185e-116
Identity = 175/338 (51.78%), Postives = 237/338 (70.12%), Query Frame = 0
Match: A0A6N2BNA1 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 345.51 bits (885), Expect = 5.185e-116
Identity = 175/338 (51.78%), Postives = 237/338 (70.12%), Query Frame = 0
Query: 1 MRMAGFASIPNDPTSSSPLRFNRV----GPTPLHLITTSAGLRLGDVLRRRFTADATHLGLVLNSSI-EEVLHRRIHHFDGYIFLQRSYDAWAAKWSSTLLFFGGEGSKNNYLRGRNSQMNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRPS 333
M MAG+ S+P++P +F++ GPT H+IT +A LRLGD L RR + H+ ++ I ++ H+ H G+ LQ S D ++A+ +LLFF + S+ + + +NS SSR S R T + +A+N+++Y+AQ+AT+GKL+ WGAKINSLID+GQLWRL++SSFLH NI HL++NCYSLNS+GP VEK SGP RY+A+Y SA+A+S MSYW KAPAVGASGAIFGLVGS+A+FI RHR + + L+++A +I+LN IGLM+KGIDNWGH GG +GG SWLLGPAWE + ++++ RR F D APIFSLI KR S
Sbjct: 12 MEMAGWPSLPSNP------KFHQTVSIWGPTTTHIITNAAALRLGDALHRRLQSSIKHIFCHVHGPILKDACHKWTLHVTGFNILQWSQDVFSAE-DISLLFFSADESRRKFRKIQNSYSKSSRSFFSSERKWTNIFLALNILIYIAQVATEGKLLFWGAKINSLIDKGQLWRLITSSFLHKNIVHLMVNCYSLNSVGPGVEKVSGPKRYVALYLTSAIASSAMSYWLSKAPAVGASGAIFGLVGSFAVFILRHRGMVKGTEGDLRYIANVIVLNLAIGLMTKGIDNWGHLGGLMGGAATSWLLGPAWEIQSISSEGRRVFADTAPIFSLIPTKRDKS 342
| Match Name | Stats | Description |
|---|---|---|
| A0A0A7E6R5 | E-Value: 2.764e-150, PID: 66.96 | (Rhomboid protein Hedne_RBL10 {ECO:0000313|EMBL:AI... [more] |
| A0A5B6Z2N8 | E-Value: 9.895e-137, PID: 58.95 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A5B6Z2X8 | E-Value: 2.594e-134, PID: 58.33 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A5J5B5V8 | E-Value: 3.028e-133, PID: 57.98 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A2R6RDW1 | E-Value: 3.287e-127, PID: 58.15 | (RHOMBOID-like protein {ECO:0000313|EMBL:PSS26746.... [more] |
| A0A0A7E6G1 | E-Value: 3.946e-125, PID: 56.50 | (Rhomboid protein Ilepu_RBL10 {ECO:0000313|EMBL:AI... [more] |
| A0A6P6ADJ2 | E-Value: 5.953e-119, PID: 53.71 | (RHOMBOID-like protein 10, chloroplastic {ECO:0000... [more] |
| D7T014 | E-Value: 2.216e-117, PID: 55.15 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A1U8B121 | E-Value: 1.912e-116, PID: 52.87 | (RHOMBOID-like protein 10, chloroplastic {ECO:0000... [more] |
| A0A6N2BNA1 | E-Value: 5.185e-116, PID: 51.78 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |