MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRG
QLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAV
AASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVA
RIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRR
AFVDKAPIFSLIKPKRRPS
| Relationships |
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| The polypeptide, XM_017371887.1, derives from mRNA, XM_017371887.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A0A7E6R5 ((Rhomboid protein Hedne_RBL10 {ECO:0000313|EMBL:AIY60652.1}))
HSP 1 Score: 331.643 bits (849), Expect = 1.572e-112
Identity = 166/218 (76.15%), Postives = 191/218 (87.61%), Query Frame = 0
Query: 1 MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 218
++ SRKD FS RGLT L A+NV+VYLAQ+ATQGKLMLWGAKINSLID+GQLWRLVSSSFLHAN+GHL++NCYSLNSIGPTVEK SGPGRYMA+Y ISA+A+S MSYW CKAPAVGASGAIFGLVGSYAMF+ RHR L+N+ LQH+A +I+LN IGLMSKGIDNWGH GG +GGV SWL+GPAW+Y+ ++D+ RAFVDKAPIFSLIK KRRP
Sbjct: 123 LDKSRKDPFSGRGLTNALFAINVLVYLAQLATQGKLMLWGAKINSLIDKGQLWRLVSSSFLHANMGHLMVNCYSLNSIGPTVEKISGPGRYMAVYIISAIASSAMSYWLCKAPAVGASGAIFGLVGSYAMFVLRHRNLNNDGIGDLQHIANVIVLNMGIGLMSKGIDNWGHLGGLLGGVATSWLIGPAWKYE--SHDQHRAFVDKAPIFSLIKTKRRP 338
Match: A0A5B6Z2N8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694} (Fragment))
HSP 1 Score: 324.709 bits (831), Expect = 1.891e-109
Identity = 146/216 (67.59%), Postives = 183/216 (84.72%), Query Frame = 0
Query: 1 MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKR 216
+ +SR+ + + R T +L+A+NV+VY+AQ+ATQGKL+LWGAK+NSLID+GQLWR +SSFLHANIGHLL+NCYSLNS+GP+VE SGP RY+A+Y SA+A+S MSYW CKAPAVGASGAIFGLVGS+A+F+ RHR L S E LQH+AR+I+LN VIGL+SKGIDNWGH GG IGG SWL+GPAW Y+ L+ND RR FVD+APIFS+++PK+
Sbjct: 136 LGTSRRISLNGRRWTNILLAINVLVYIAQIATQGKLLLWGAKVNSLIDKGQLWRFATSSFLHANIGHLLVNCYSLNSVGPSVENISGPRRYLAVYMTSAIASSAMSYWLCKAPAVGASGAIFGLVGSFAVFVLRHRDLVKSSREDLQHIARVIVLNMVIGLLSKGIDNWGHLGGLIGGAATSWLIGPAWRYESLSNDGRRVFVDRAPIFSIVRPKK 351
Match: A0A5B6Z2X8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694} (Fragment))
HSP 1 Score: 321.242 bits (822), Expect = 3.973e-108
Identity = 145/216 (67.13%), Postives = 182/216 (84.26%), Query Frame = 0
Query: 1 MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKR 216
+ +SR+ + + R T +L+A+NV+VY+AQ+ATQGKL+LWGAK+NSLID+GQLWR +SSFLHANIGHLL+NCYSLNS+GP+VE SGP RY+A+Y SA+A+S MSYW CKAPAVGASGAIFGLVGS+A+F+ RHR L S E LQH+AR+I+LN VIGL+SKGIDNWGH GG IGG SWL+GPAW Y+ L+ND RR FVD+APIFS+++ K+
Sbjct: 142 LGTSRQISLNGRRWTNILLAINVLVYIAQIATQGKLLLWGAKVNSLIDKGQLWRFATSSFLHANIGHLLVNCYSLNSVGPSVENISGPRRYLAVYMTSAIASSAMSYWLCKAPAVGASGAIFGLVGSFAVFVLRHRDLVKSSREDLQHIARVIVLNMVIGLLSKGIDNWGHLGGLIGGAATSWLIGPAWRYESLSNDGRRVFVDRAPIFSIVRTKK 357
Match: A0A5J5B5V8 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 317.775 bits (813), Expect = 5.410e-107
Identity = 145/218 (66.51%), Postives = 179/218 (82.11%), Query Frame = 0
Query: 1 MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 218
+ +SR+ +F+ R T +L+A+NV+VY+AQ+ATQGKL+LWGAKINSLID+GQLWR +SSFLHANIGHL++NCYSLNS+GP+VE SGP RY+A+Y SA+A+S MSYW CKAPAVGASGAIFGLVGS+A+F+ RHR L LQH+AR+I+LN VIGL+SKGIDNWGH GG IGG +W +GPAW Y+ L+ND RR FVDKAPIFS+I K P
Sbjct: 121 LGTSRQISFNGRQWTDILLAINVLVYIAQVATQGKLLLWGAKINSLIDKGQLWRFATSSFLHANIGHLMVNCYSLNSVGPSVENISGPRRYLAVYITSAIASSAMSYWLCKAPAVGASGAIFGLVGSFAVFVLRHRDLVKSGRGDLQHIARVIVLNMVIGLLSKGIDNWGHLGGLIGGAATAWFIGPAWRYESLSNDGRRVFVDKAPIFSIIDTKGTP 338
Match: A0A2R6RDW1 ((RHOMBOID-like protein {ECO:0000313|EMBL:PSS26746.1}))
HSP 1 Score: 317.005 bits (811), Expect = 1.088e-106
Identity = 144/218 (66.06%), Postives = 180/218 (82.57%), Query Frame = 0
Query: 1 MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 218
+ +SR+ + + RG T +L+AVNV+V++AQ+ATQGKL++WGAKINSLID GQLWRL +S+FLHANI HL++NCYSLNS+GPTVE SGP RY+A+YF SA+A+S SYWFCKAPAVGASGAIFGLVGS+A+F+ RHR L E L+H+A +I+LN VIGL+SKGIDNWGH GG +GG SWLLGPAW Y+ +ND R+ F D+APIF+LIK KR P
Sbjct: 117 LGTSRRISHNGRGWTNILLAVNVLVFIAQVATQGKLLVWGAKINSLIDEGQLWRLATSAFLHANITHLMVNCYSLNSVGPTVEAISGPRRYLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSFAVFVLRHRGLVRGGKEDLRHIAHVIVLNMVIGLLSKGIDNWGHLGGLVGGAATSWLLGPAWRYESTSNDGRKVFADRAPIFALIKTKRTP 334
Match: A0A7N2RCU7 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 311.612 bits (797), Expect = 1.988e-104
Identity = 140/214 (65.42%), Postives = 179/214 (83.64%), Query Frame = 0
Query: 4 SRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRR 217
S +++F+ R T +L+AVNV++++AQ ATQG+L+LWGAKINSLID+GQ WRLV+SSFLHANIGHL++NCYSLNS+GP+ E SGP R++A+YF SA+++S MSYWFCKAPAVGASGAIFGL+G+ A+F RHR L E LQH+A++I+LN VIGL SKGIDNWGH GGF+GG ASWLLGP+W+Y+ +++D RR F D+APIF LIK KR
Sbjct: 128 SSRNSFNGRRWTNILLAVNVLIFIAQTATQGQLILWGAKINSLIDKGQFWRLVTSSFLHANIGHLMVNCYSLNSLGPSAENISGPRRFLAVYFASAISSSVMSYWFCKAPAVGASGAIFGLIGAVAVFATRHRQLVGRGKEDLQHIAQVIVLNMVIGLFSKGIDNWGHLGGFLGGAAASWLLGPSWKYESMSSDGRRIFADRAPIFYLIKKKRE 341
Match: A0A834SHG6 ((RHOMBOID-like protein 10, chloroplastic isoform X1 {ECO:0000313|EMBL:KAF7803641.1}))
HSP 1 Score: 311.227 bits (796), Expect = 2.033e-104
Identity = 140/215 (65.12%), Postives = 175/215 (81.40%), Query Frame = 0
Query: 4 SRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 218
S ++ SRR T +L+A N+++++AQ+ATQGKL+LWGAKINSLID+GQLWRL +SSFLHANIGHL++NCYSLNSIGPTVE +SGP RY+A+Y +SA+A+S MSYWFC+ PAVGASGAIFGLVGS A+F+ RHR L E LQH+A I++LN VIGL+S GIDNWGH GG +GG ASW +GPAW+Y+ T D RR F DKAPI+++ KR P
Sbjct: 121 SNRNPLSRRKWTNILLAANILLFIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLMVNCYSLNSIGPTVESFSGPTRYLAVYSVSALASSAMSYWFCRMPAVGASGAIFGLVGSLAVFVLRHRELVGGGKEDLQHIAHILVLNMVIGLLSDGIDNWGHLGGLMGGAAASWFIGPAWKYESTTRDGRRVFTDKAPIYNIFNIKRLP 335
Match: A0A6A2ZH96 ((Putative RING/U-box superfamily protein {ECO:0000313|EMBL:KAE8690729.1}))
HSP 1 Score: 308.916 bits (790), Expect = 1.105e-103
Identity = 135/218 (61.93%), Postives = 180/218 (82.57%), Query Frame = 0
Query: 1 MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 218
M +SR+++F++R T +L+A+N+++Y+AQ+ATQGKL+LWGAKIN+LID+GQLWRL +SS LHAN+GHL++NCYSLNSIGPTVE SGP R++A+Y SA++++ SYWFCKAPAVGASGAIFGLVGS A+F+ RHR + ++ E LQ +A++I LN VIGLMS+GIDNWGH GG +GG SWL+GPAW+Y+ +T+ RR F DKAP+ L KR+P
Sbjct: 113 METSRRNSFNKRNWTNILLAINILMYVAQLATQGKLLLWGAKINNLIDKGQLWRLATSSLLHANLGHLMVNCYSLNSIGPTVENLSGPRRFLAVYLTSAISSAATSYWFCKAPAVGASGAIFGLVGSVAVFVMRHRGMIRDAKEDLQQIAQVIFLNMVIGLMSRGIDNWGHLGGLVGGAAMSWLVGPAWKYESMTSHGRRIFTDKAPLSYLTDRKRKP 330
Match: A0A5C7HAF0 (Rhomboid domain-containing protein {ECO:0000259|Pfam:PF01694})
HSP 1 Score: 307.76 bits (787), Expect = 1.511e-103
Identity = 140/218 (64.22%), Postives = 173/218 (79.36%), Query Frame = 0
Query: 1 MNSSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 218
+ +SR+++F+ R T +L+A N+++Y+AQ+A+QGKLMLWGAKINSLID+GQ WRL +SS LHANI HL++NCYSLNSIGPTVE GP RY+A+YF SA+A+STMSY FCKAPAVGASGAIFGLVGS A+FI RHR + E LQH+A++I N IG M KGIDNWGH GG +GGV SW LGPAW+Y+ ++ND R F DKAPIF I KR+P
Sbjct: 87 LETSRRNSFNERQWTNILLAANILIYIAQIASQGKLMLWGAKINSLIDKGQFWRLATSSLLHANIAHLMVNCYSLNSIGPTVESICGPRRYLAVYFCSAIASSTMSYQFCKAPAVGASGAIFGLVGSLAVFIMRHRGMVEGGREELQHIAQVIFFNMAIGFMFKGIDNWGHLGGSLGGVAMSWFLGPAWKYESMSNDGSRIFTDKAPIFYFINRKRKP 304
Match: A0A0A7E7Z4 ((Rhomboid protein Lonja_RBL10 {ECO:0000313|EMBL:AIY60710.1}))
HSP 1 Score: 307.76 bits (787), Expect = 5.488e-103
Identity = 141/216 (65.28%), Postives = 176/216 (81.48%), Query Frame = 0
Query: 3 SSRKDAFSRRGLTTVLIAVNVVVYLAQMATQGKLMLWGAKINSLIDRGQLWRLVSSSFLHANIGHLLINCYSLNSIGPTVEKYSGPGRYMAIYFISAVAASTMSYWFCKAPAVGASGAIFGLVGSYAMFIFRHRYLSNESGEGLQHVARIIMLNAVIGLMSKGIDNWGHFGGFIGGVGASWLLGPAWEYKMLTNDKRRAFVDKAPIFSLIKPKRRP 218
+SRKD+ + R LT +LIAVNV+VY+AQ+AT+G+L+ WGAK+NSLID+GQLWRLV+SSFLHANI HL++NC+SLNS+GP VE SGP RY+A+YF SAV S MSYW K+P+VGASGAIFGL GS+A+F+ RH L E LQH+AR+I+LN VIG +S+GIDNWGH GG I GV SW +GPAW+Y+ L+ D RR F+D+API SLIKPKR P
Sbjct: 125 TSRKDSSNGRRLTNILIAVNVLVYIAQIATKGRLISWGAKVNSLIDQGQLWRLVTSSFLHANIAHLMVNCFSLNSVGPAVENVSGPRRYIALYFTSAVGGSAMSYWLSKSPSVGASGAIFGLTGSFAVFMLRHGSLVKGGMEELQHIARVILLNMVIGGLSRGIDNWGHLGGLIAGVATSWFIGPAWKYEALSGDGRRVFIDRAPILSLIKPKRTP 340
| Match Name | Stats | Description |
|---|---|---|
| A0A0A7E6R5 | E-Value: 1.572e-112, PID: 76.15 | (Rhomboid protein Hedne_RBL10 {ECO:0000313|EMBL:AI... [more] |
| A0A5B6Z2N8 | E-Value: 1.891e-109, PID: 67.59 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A5B6Z2X8 | E-Value: 3.973e-108, PID: 67.13 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A5J5B5V8 | E-Value: 5.410e-107, PID: 66.51 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A2R6RDW1 | E-Value: 1.088e-106, PID: 66.06 | (RHOMBOID-like protein {ECO:0000313|EMBL:PSS26746.... [more] |
| A0A7N2RCU7 | E-Value: 1.988e-104, PID: 65.42 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A834SHG6 | E-Value: 2.033e-104, PID: 65.12 | (RHOMBOID-like protein 10, chloroplastic isoform X... [more] |
| A0A6A2ZH96 | E-Value: 1.105e-103, PID: 61.93 | (Putative RING/U-box superfamily protein {ECO:0000... [more] |
| A0A5C7HAF0 | E-Value: 1.511e-103, PID: 64.22 | Rhomboid domain-containing protein {ECO:0000259|Pf... [more] |
| A0A0A7E7Z4 | E-Value: 5.488e-103, PID: 65.28 | (Rhomboid protein Lonja_RBL10 {ECO:0000313|EMBL:AI... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |