Resource Type:
Polypeptide
Name:
XM_017371181.1
Identifier:
XM_017371181.1-protein
Sequence:
MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQE
EEKVEEVSKEEVRIEENYEEDEDPEEIFEEGAEEIQQKPPSFTNQEEVKE
SVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEVEEIEEDS
EGAIVGEEEGEEVEEINDGHEELGEEDLEHGGEGPTDLADAEEQEHHDVF
KERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNK
GFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAW
TKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSF
RRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDED
RVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNT
ELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSI
PPRSLPVREARGVRSNLPPINRGLRRPPAFRDRREVIAKPPRGRTMLAPI
PRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYG
PRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFER
PPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPR
GSASQYGDSYSERIGRSEIGYSSRSSIPSQDSRALYSRRQIMDYGGGSYS
GSDVGDGMYSSSYSDYMSRGGDVPSRSYSSLYPGSGRGLGGSSYMGSSGS
GSYY
Sequence Length:
804
Sequence Checksum:
a196715bb62365ea2387d940c5c99048
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371181.1, derives from mRNA, XM_017371181.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EVI0 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY90382.1}))
HSP 1 Score: 937.176 bits (2421), Expect = 0.000e+0
Identity = 529/841 (62.90%), Postives = 622/841 (73.96%), Query Frame = 0
Match: A0A7J0EVI0 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY90382.1}))
HSP 1 Score: 937.176 bits (2421), Expect = 0.000e+0
Identity = 529/841 (62.90%), Postives = 622/841 (73.96%), Query Frame = 0
Query: 1 MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQEEEKVEEVSKEEVRIEENYEEDEDPEEIFEEGAEEIQQK-PPSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEVEEIEEDSEGAIVGEEEGEEVEEINDGHEEL-GEEDLEHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPP-INRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFER--PPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGG------------------------------GSYSGSDVGDGMYSSSY-SDYMSRGGDVPSRSYSSLYPGSGRGLGGSSYMGSSGSGSYY 804
MPP+ AK+ G G + R R + K + + E E V EE+K+ EE K+E+ EE + E + E E +++ S +++VKE V+EYE+GERLDLEDNEPE + EEYGGVDYDEK+ E + + EEIE + G+ +E+E++ EEL GE+D++H E DL DAEE+EHHDVFKERRKRKEFE+FVGGLDKDA+E DLRKVFS VGE+TEVRLMMN QT KNKGFAFLRFAT+EQAKRAC++LKNPVVNGK+CGVT SQDSDTLFLGNICK W+KE LK KLKHYG++NIEDLTLVED+NN+G+NRGFAFLEFSSRSDAMD+F+RLQKRDVVFGVDRPAKVSFADSFIDPGDEIM QVK VFVDGLP+SWDE+RVR+LLK YG IEKIELARNMPSAKRKDFGF+TFDTHD+AVTCAKNINN ELGEGESKAKVRARLSRP+ RGKGK R DF P GA G + PW R + PRSLP+R RG+ S LPP ++RGL+RP AFRDRR ++ P RGR + +P SR Y+RRPPPVPSYPKS+ ++DYGRR+ELPPR R A +Y R APPERRPSYRD+YP R +GY D+ R+ +R A+RR YVDDGYGQRFER PPPSY E R+YD+ISGSKRPY A+DD+ P YA+ +RQSR RL+YE GS+SQYGD+YS+R+GRS +GY SSR+S+ SQDS LYS RQ M YGG GSY GSD GMYSSSY DYMSRG DV SYS S RGLGGSSYMG+ GSGSYY
Sbjct: 1 MPPRTAKKTPPGPGAK--RVARAKRGASKAQNQPEAVEQSVKVEEIKV-EEVKIEDGKVEEQPVVSQVVELDPEREPEAEPETKLEANGLVSVKKEDDVKELVDEYEKGERLDLEDNEPEFDPEEYGGVDYDEKKIEQEGIEGEEEIEGNVGEEEGGDTAEDEMEDVP---EELEGEDDVDHAIEEHGDLVDAEEEEHHDVFKERRKRKEFEVFVGGLDKDATEDDLRKVFSGVGELTEVRLMMNNQTKKNKGFAFLRFATIEQAKRACAELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWSKEDLKSKLKHYGIENIEDLTLVEDTNNEGLNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMTQVKTVFVDGLPSSWDENRVRELLKIYGGIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKNINNEELGEGESKAKVRARLSRPLQRGKGKHIDR-DFRPGRGAPRGARGPWVRPV-PRSLPMRGVRGMGSRLPPAVDRGLKRPVAFRDRRPFMSAPVRGRPL-----------APPSRFYERRPPPVPSYPKSNFKRDYGRRDELPPRGRAAAEYASR-APPERRPSYRDDYPSRSAGYPDLSRTTSRTAARRPYVDDGYGQRFERPPPPPSYHEEHGREYDTISGSKRPYSAMDDIPPRYADVGVRQSRARLDYELGGSSSQYGDAYSDRLGRSNLGYGSSRTSLSSQDSHGLYSSRQGMAYGGGAFLSYDKMHMQNITFGIDFLNAFWLIFHVGSYGGSD--GGMYSSSYDGDYMSRGSDVGGSSYSLY---SSRGLGGSSYMGTGGSGSYY 816
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z7N8 ((Putative nucleolin {ECO:0000313|EMBL:MPA40049.1}))
HSP 1 Score: 927.546 bits (2396), Expect = 0.000e+0
Identity = 507/700 (72.43%), Postives = 570/700 (81.43%), Query Frame = 0
Match: A0A5B6Z7N8 ((Putative nucleolin {ECO:0000313|EMBL:MPA40049.1}))
HSP 1 Score: 927.546 bits (2396), Expect = 0.000e+0
Identity = 507/700 (72.43%), Postives = 570/700 (81.43%), Query Frame = 0
Query: 91 SFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEV--EEIEEDSEGAIVGEEEGEEVEEINDGHE----------ELGEEDL--EHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPPI-NRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFERPPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDV 773
S +EVKESV+EYE+GERLDLEDNEPE E EEYGGVDYDEKE E +D QE E +EE EG I E+EG+ VEE + GEE EH GE D+ DAEE+EHH+V KERRKRKEFEIFVGGLDKDA++ DLRKVFSEVG+VTEVRLMMNPQT KNKGFAFLRFATVEQAKRAC++L+NPVVNGK+CGVT SQDSDTLFLGNICK WTKEALK+KLKHYGV+N++DLTLVEDSNN+GMNRGFAFLEFSSRSDAMD+F+RLQKRDVVFGVDR AKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR+LLKKYG+IEKIELARNMPSAKRKDFGF+TFDTHD+AV CAK INN ELGEGE+KAKVRARLSRP+ RGKGK + GDF P G +APWGR + PRSLPV ARG+ P +RGL+RP AFRDRR +A PPRGR LAP+P RSYDRR PPVPSYPKSS ++DYGRR++LPPRSR A +YG RVA ERRP YRDEY RGSGY+D+PRS +R A+ R YVDDGYGQRFERPPPSYREGR RDYDSISGSKRPY ALDDV P YA+ +RQSR RL+Y+ GSASQYGD+YS+R+GRS +GY SRSS+ SQD+++LYS RQ MDYGGGS+ DVG G+YSSS+ DYMSRG DV
Sbjct: 93 SAKKDDEVKESVDEYEKGERLDLEDNEPEYEPEEYGGVDYDEKEIEQEDVQEEGDEVVEEPEEGDIGEEDEGDMVEEEMEDIPEELEGEDDDEHAGEEHASEEHAGEEHADMVDAEEKEHHEVVKERRKRKEFEIFVGGLDKDATDDDLRKVFSEVGKVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRACTELRNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVDDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRAAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVACAKCINNEELGEGENKAKVRARLSRPLQRGKGKYVAHGDFRPGRAVGRGVRAPWGRPV-PRSLPVHGARGIGGRFPVTSDRGLKRPVAFRDRRPFMAMPPRGRP-LAPLP----------RSYDRR-PPVPSYPKSSMKRDYGRRDDLPPRSRAAAEYGSRVA-SERRPVYRDEYSSRGSGYSDLPRSTSRTAAARPYVDDGYGQRFERPPPSYREGRGRDYDSISGSKRPYTALDDVPPRYADAGVRQSRARLDYDLGGSASQYGDAYSDRLGRSNLGYGGSRSSLSSQDTQSLYSSRQGMDYGGGSFGSGDVG-GIYSSSFGGDYMSRGADV 777
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EC96 ((Uncharacterized protein {ECO:0000313|EMBL:THG13404.1}))
HSP 1 Score: 909.827 bits (2350), Expect = 0.000e+0
Identity = 535/808 (66.21%), Postives = 612/808 (75.74%), Query Frame = 0
Match: A0A4S4EC96 ((Uncharacterized protein {ECO:0000313|EMBL:THG13404.1}))
HSP 1 Score: 909.827 bits (2350), Expect = 0.000e+0
Identity = 535/808 (66.21%), Postives = 612/808 (75.74%), Query Frame = 0
Query: 1 MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVP---KEEVKIQE-------EEKVEE-----------------VSKEEVRIEENYEEDEDPEEIFEEGAEEIQQKPPSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEE--YGGVDYDEKEPEHDDFQEV-EEIEEDSEGAIVGEEEGEEVE-EINDGHEELGEEDLEHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESK-AKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPP-INRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFERPPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDV 773
MPP+ AK+ A G G + RGGR ++ PK + KE K EVP KEE+KI E E KV E + E + E + DP+ + GA + S +EVKESV+EYE+GERLDL DNEPE E E Y GVDYDEKE E +D QE +E+E ++EG + EEEG+ VE E+ DG EEL ED H E ++ DAEEQEHHDVFKERRKRKEFE+FVGGLDKDA+E DLRKVFSEVGEVTEVRLMMN QT KNKGFAFLRFATVEQAKRA ++LKNPVVNGK+CGVT SQDSDTLFLGNICK WTKEALK+KLKH+GVDNIEDLTLVEDSNN+G+NRGFAFLEFS+RSDAMD+F+RLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR LLKKYG+I KIELARNMPSAKRKDFGF+TF THD+AVTCAK INN ELGEGE K AKVRARLSRP+ RGKGK +R DF P GA G +APWGR + PRSLP+R RG+ S LPP ++RG++RP FRDRR V+ P RGR LAP P SRSY+RR PPVPSYPKSS ++DYGRR+ELPPR R +Y RV P ERRPSY+D+Y RGSGY+D+PR+ +R A+RRAYVD+GYGQRFERPPPSYREGR RDYD +SGSKRPY A+DDV P YA+ +RQSR RL+YE GS SQYGD+YS+R+GRS +GY SSR+S+ SQDS LYS RQ M Y GG S GMYSSSY DY+SRG DV
Sbjct: 1 MPPRTAKKTAAGPGTK--RGGRTTRGTPKAQ-KEAAKVEEVPIDVKEEIKIPEIVEEKPVESKVPEPDTEPEADPEPEPEPEPEPEPEPVADPEPEPEVDPKSEVKLGANGLA----SSKKGDEVKESVDEYEKGERLDLGDNEPESEPEPEEYVGVDYDEKEIEQEDVQEEGDEVEGEAEGDVGEEEEGDMVEDEMEDGPEELEGEDEVHAVEEHANVIDAEEQEHHDVFKERRKRKEFEVFVGGLDKDATEEDLRKVFSEVGEVTEVRLMMNSQTKKNKGFAFLRFATVEQAKRAFTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHFGVDNIEDLTLVEDSNNEGLNRGFAFLEFSARSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRLLLKKYGEIVKIELARNMPSAKRKDFGFVTFGTHDAAVTCAKCINNEELGEGEHKVAKVRARLSRPLQRGKGKHVAR-DFRPGRGAGRGVRAPWGRPV-PRSLPMRGVRGIGSRLPPAVSRGVKRPVTFRDRRPVMTMPVRGRA-LAP---------PPSRSYERR-PPVPSYPKSSLKRDYGRRDELPPRGRAVAEYPSRV-PAERRPSYKDDYSSRGSGYSDLPRTTSRNAARRAYVDEGYGQRFERPPPSYREGRGRDYDPMSGSKRPYSAMDDVPPRYADAGVRQSRARLDYELSGSGSQYGDAYSDRLGRSSLGYGSSRTSLSSQDSHGLYSSRQGMGY-GGGSFSSSDVGGMYSSSYGGDYVSRGSDV 786
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QPL3 ((Heterogeneous nuclear ribonucleoprotein like {ECO:0000313|EMBL:PSS11857.1}))
HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0
Identity = 507/786 (64.50%), Postives = 590/786 (75.06%), Query Frame = 0
Match: A0A2R6QPL3 ((Heterogeneous nuclear ribonucleoprotein like {ECO:0000313|EMBL:PSS11857.1}))
HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0
Identity = 507/786 (64.50%), Postives = 590/786 (75.06%), Query Frame = 0
Query: 1 MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQEEEKVEEVSKEEVRIEENYEEDEDPEEIFEEGAEEIQQKPPSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEVEEIEEDSEGAI--------VGEEEGEEVEEINDGHEELGEEDLEHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPP-INRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFER--PPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDV 773
MPP++AK+ G G + R R ++ K + + E E V EE+K++E E E + + E D +PE Q S ++EVKESV+EYE+GERLDLEDNEPE E EEYGGVDYD +E E +D QE E+ + E+E E+V E + +++ EHG DL DAEE+EHHDVFKERRKRKEFE+FVGGLDKDA+E DLRKVFS VGEVTEVRLMMN QT KNKGFAFLRFAT+EQAKRAC++LKNPVVNGK+CGVT SQDSDTLFLGNICK WTKEALK KLK YG++NIEDLTLVEDSNN+G+NRGFAFLEFSSRSDAMD+F+RLQKRDV+FGVDRPAKVSFADSFIDPGDEIMAQVK VFVDGLPASWDE+RVR+LLK YG IEKIELARNMPSAKRKDFGF+TFDTHD+AVTCAK+INN ELGEGESKAKVRARLSRP+ RGKGK R DF P GA G + PW + PRSLP+ R + S LPP ++RGL+RP AFRDRR V++ P RGR + +P SRSY+RRPPPVPSYPKSS ++DYGRR+ELPPR R A DY R APPERRPSYRD+Y R +GY D+PR+ +R A+RR YVDDGYGQRFER PPPSYREGR R+YD+ISGSKRPY A+DD+ P YA+ +RQSR RL+YE GS+SQYGD+YS+R+GRS +GY SSR+S+ SQDS LYS RQ M G S GMYSSSY DYMSRG DV
Sbjct: 1 MPPRSAKKTPPGPGAK--RVARATRGASKAQNQPEAVEQSVKVEEIKVEEVTIEEVRVVETTVVSQVVEADPEPEPE--------AQGLVSVKKEDEVKESVDEYEKGERLDLEDNEPEFEPEEYGGVDYDVQEIEQEDVQEEGIEGEEEVEGDVGEEEGGDMAEDEMEDVPEEAEVEDDVEHAIEEHG-----DLVDAEEEEHHDVFKERRKRKEFEVFVGGLDKDATEDDLRKVFSGVGEVTEVRLMMNNQTKKNKGFAFLRFATIEQAKRACAELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKSKLKQYGIENIEDLTLVEDSNNEGLNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDENRVRELLKIYGGIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNEELGEGESKAKVRARLSRPLQRGKGKHVVR-DFRPGRGAPRGARGPWVHPV-PRSLPMHGVRRMGSRLPPAVDRGLKRPVAFRDRRSVMSAPVRGRPL-----------APPSRSYERRPPPVPSYPKSSLKRDYGRRDELPPRGRAAADYDSR-APPERRPSYRDDYSSRSAGYPDLPRTTSRTAARRPYVDDGYGQRFERPPPPPSYREGRGREYDTISGSKRPYSAMDDIPPRYADAGVRQSRARLDYELGGSSSQYGDAYSDRLGRSNLGYGSSRTSLSSQDSHGLYSSRQGMT--YGGGSYGGSDGGMYSSSYGGDYMSRGSDV 755
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H3U0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5946494.1}))
HSP 1 Score: 905.59 bits (2339), Expect = 0.000e+0
Identity = 529/813 (65.07%), Postives = 610/813 (75.03%), Query Frame = 0
Match: A0A7J7H3U0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5946494.1}))
HSP 1 Score: 905.59 bits (2339), Expect = 0.000e+0
Identity = 529/813 (65.07%), Postives = 610/813 (75.03%), Query Frame = 0
Query: 1 MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQEEEKVEEVSKEEVRIEENYEEDEDPE-----------------------------EIFEEGAEEIQQKPPSFTNQ---EEVKESVEEYERGERLDLEDNEPEDEAEE--YGGVDYDEKEPEHDDFQEV-EEIEEDSEGAIVGEEEGEEVE-EINDGHEELGEEDLEHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESK-AKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPP-INRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFERPPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDV 773
MPP+ AK+ A G G + RGGR ++ PK + KE K EVP + ++EE K+ E+ +EE E + PE E + E++ + +EVKESV+EYE+GERLDL DNEPE E E Y GVDYDEKE E +D QE +E+E ++EG + EEEG+ VE E+ DG EEL ED H E ++ DAEEQEHHDVFKERRKRKEFE+FVGGLDKDA+E DLRKVFSEVGEVTEVRLMMN QT KNKGFAFLRFATVEQAKRA ++LKNPVVNGK+CGVT SQDSDTLFLGNICK WTKEALK+KLKH+GVDNIEDLTLVEDSNN+G+NRGFAFLEFS+RSDAMD+F+RLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR LLKKYG+I KIELARNMPSAKRKDFGF+TF THD+AVTCAK INN ELGEGE K AKVRARLSRP+ RGKGK +R DF P GA G +APWGR + PRSLP+R RG+ S LPP ++RG++RP FRDRR V+ P RGR LAP P SRSY+RR PPVPSYPKSS ++DYGRR+ELPPR R +Y RV P ERRPSY+D+Y RGSGY+D+PR+ +R A+RRAYVD+GYGQRFERPPPSYREGR RDYD +SGSKRPY A+DDV P YA+ +RQSR RL+YE GS SQYGD+YS+R+GRS +GY SSR+S+ SQDS LYS RQ M Y GG S GMYSSSY DY+SRG DV
Sbjct: 1 MPPRTAKKTAAGPGTK--RGGRTTRGTPKAQ-KEAAKVEEVP---IDVKEEIKIPEI------VEEKPVESKVPEPDTEPEADPEPEPEPEPEPEPVADPEPEPEPEVDPKSEVKLGANGLASSKKGDEVKESVDEYEKGERLDLGDNEPESEPEPEEYVGVDYDEKEIEQEDVQEEGDEVEGEAEGDVGEEEEGDMVEDEMEDGPEELEGEDEVHAVEEHANVIDAEEQEHHDVFKERRKRKEFEVFVGGLDKDATEEDLRKVFSEVGEVTEVRLMMNSQTKKNKGFAFLRFATVEQAKRAFTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHFGVDNIEDLTLVEDSNNEGLNRGFAFLEFSARSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRLLLKKYGEIVKIELARNMPSAKRKDFGFVTFGTHDAAVTCAKCINNEELGEGEHKVAKVRARLSRPLQRGKGKHVAR-DFRPGRGAGRGVRAPWGRPV-PRSLPMRGVRGIGSRLPPAVSRGVKRPVTFRDRRPVMTMPVRGRA-LAP---------PPSRSYERR-PPVPSYPKSSLKRDYGRRDELPPRGRAVAEYPSRV-PAERRPSYKDDYSSRGSGYSDLPRTTSRNAARRAYVDEGYGQRFERPPPSYREGRGRDYDPMSGSKRPYSAMDDVPPRYADAGVRQSRARLDYELSGSGSQYGDAYSDRLGRSSLGYGSSRTSLSSQDSHGLYSSRQGMGY-GGGSFSSSDVGGMYSSSYGGDYVSRGSDV 786
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1WX69 ((Heterogeneous nuclear ribonucleoprotein Q {ECO:0000313|EMBL:KAB1228258.1}))
HSP 1 Score: 902.508 bits (2331), Expect = 0.000e+0
Identity = 509/722 (70.50%), Postives = 574/722 (79.50%), Query Frame = 0
Match: A0A6A1WX69 ((Heterogeneous nuclear ribonucleoprotein Q {ECO:0000313|EMBL:KAB1228258.1}))
HSP 1 Score: 902.508 bits (2331), Expect = 0.000e+0
Identity = 509/722 (70.50%), Postives = 574/722 (79.50%), Query Frame = 0
Query: 89 PPSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEVEEIEEDSEGAIVGEEEGEEVEEINDGHEELGEEDLEHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPPINRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREEL-PPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFER---PPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDVPSRSYSSLYPGSGRGLGGSSYMGSSGSGSYY 804
P T ++EVKESV+EYE+ ERL+LEDN+PE E EEYGGVDYDEKE E +D QEV + EE+ VEE E ED+ EG D AEE+EHH+V KERRKRKEFE+FVGGLDKDA+E DLRKVF VGEVTEVRLMMNPQT KNKGFAFLRFATVEQAKR ++LK+P++NGK+CGVT SQDSDTLFLGNICK WTKEALK+KLKHYGVDN+EDLTLVEDSNN+GMNRGFAFLEFSSRS+AMD+F+RLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR+LLKKYG+IEKIELARNMPSAKR+DFGF+TFDTHD+AVTCAK+INN ELGEGE KAKVRARLSRP+ RGKGK SRGDF G S ++ W R PRSLPVR RG+ + LPP + ++RP RDRR V++ P RGR P+P P RSYDRR PVP+YPKSS ++DYGRR+E PPRSR AVDYG R A PERR SYR+EY RG GY+D+PRS +RP +RRAYVDDGY QRFER PPPSYREGR RDYDS+SGSKRPY ALDDV P YAE +RQSR R++YE ASQYGD+Y +R+GRS IGY S RSS SQDS LYS RQ M YGGGS++GSDVG GMYSSSY SDYMSRG DV SYSS+ SGRG+GGS+YMG+ GSGSYY
Sbjct: 20 PYFITEEDEVKESVDEYEKDERLELEDNDPEYEPEEYGGVDYDEKEIEQEDVQEVGDDEEEELED-------NTVEEEEGDIVEEEMEDVHEELEGEEDDEHAEEEEHHEVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRVVTELKHPMINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSEAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRRDFGFVTFDTHDAAVTCAKSINNAELGEGEHKAKVRARLSRPLQRGKGKHVSRGDFRSGRGVSRVVRSSWSRP-APRSLPVRGVRGIGTRLPPAS--MKRPGGLRDRRPVLSMPTRGR----PLP-------PPVRSYDRR-APVPAYPKSSLKRDYGRRDEFPPPRSRAAVDYGTR-AIPERRLSYREEYSSRGPGYSDLPRSTSRPVARRAYVDDGYSQRFERPAPPPPSYREGRARDYDSMSGSKRPYVALDDVPPRYAESGVRQSRARIDYEYSAGASQYGDAYGDRLGRSNIGYGSGRSSASSQDSHGLYSSRQGMSYGGGSFNGSDVG-GMYSSSYGSDYMSRGSDVGGSSYSSM--YSGRGMGGSNYMGNGGSGSYY 715
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A660KX36 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8038546.1}))
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 536/820 (65.37%), Postives = 621/820 (75.73%), Query Frame = 0
Match: A0A660KX36 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8038546.1}))
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 536/820 (65.37%), Postives = 621/820 (75.73%), Query Frame = 0
Query: 1 MPPKAAKRGAG---GRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQEEEKVEEVSKEEVRIEENYEEDEDPEEIFEEGAEEIQQKPPSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEVEEIEEDSEGAIVGEEEGEEVEE--INDGHEELGEEDL--EHGGEGP--TDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPPINRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREEL-PPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFER----PPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGYS-SRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDVPSRSYSSLYPGSGRGLGGSSYMGSSGSGSYY 804
MPP+ KRG R R RG + ++S P E EE ++E EV +Q E+V+ V K+ V E+ D +PE + I +EEVKESV+EYE+ ERL+LEDN+PE E EEYGGVDYDEKE E +D QEV + E+ VGEEE ++ E + D HEEL E+ +H GE L DAEE+EH +V KERRKRKEFE+FVGGLDKDASE DLRKVFSEVGEVTEVRLMMNPQT KNKGFAFLRF VEQAKRA ++LK+PV+NGK+CGVT SQDSDTLFLGNICK WTKEALK+KLKHYGV N+EDLTLVED NN+GMNRGFAFLEFSSRSDAMD+F+RLQKRD+VFGVDRPAKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR+LLKKYG+IEKIELARNMP+AKR+DFGF+TFDTHD+AVTCAK+INN ELGEG+SKAKVRARLSRP+ RGKGK SRGD+ G ++ WGR PRSLP+ RG+ S +PP++ ++R RDRR V++ P RGR + +P +RSYDRR PVPSYPKSS ++DYGRR++L PPRSR A DYGPR A PERRPSYRD+Y RG Y+D+PR+ +RPA+RRAYVDDGYGQRFER PPPSYREGR RDYDSISGSKRPY ALDDV P YA+ +RQSR RL+YE G ASQYGD+Y +R+GRS +GYS RSS+ SQDS LYS RQ M YGGG GS GMYSSSY DYMSRG DV SYSS+Y S RG+GGSSYMG+ GSGSYY
Sbjct: 1 MPPRTVKRGGALGPRRTARATRGAQKAQSQPPEAATEEVAKVE----EVPVQAVEEVK-VEKKPVVEEKPVPVDIEPE------VKGIANGSGPEKKEEEVKESVDEYEKDERLELEDNDPEYEHEEYGGVDYDEKEIEQEDVQEVGDEGEEEFEENVGEEEEGDMVEEDMEDVHEELEGEEDDEQHAGEEQEHAQLVDAEEEEHQEVVKERRKRKEFEVFVGGLDKDASEDDLRKVFSEVGEVTEVRLMMNPQTKKNKGFAFLRFKNVEQAKRAVTELKHPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVHNVEDLTLVEDGNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDIVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKYGEIEKIELARNMPTAKRRDFGFVTFDTHDAAVTCAKSINNAELGEGDSKAKVRARLSRPLQRGKGKHVSRGDYRSGRGVGRVARSSWGRPA-PRSLPMHGIRGIGSRIPPVS--MKRSGGLRDRRPVVSMPTRGRPL-----------APPARSYDRR-APVPSYPKSSLKRDYGRRDDLPPPRSRAATDYGPR-AVPERRPSYRDDYSSRGPAYSDIPRTTSRPAARRAYVDDGYGQRFERPPPPPPPSYREGRARDYDSISGSKRPYAALDDVPPRYADSGVRQSRARLDYEYSGGASQYGDAYGDRLGRSNLGYSGGRSSVSSQDSHGLYSSRQGMSYGGGGSFGSSDVGGMYSSSYGGDYMSRGSDVGGSSYSSMY--SSRGVGGSSYMGTGGSGSYY 791
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z7Q8 ((Putative nucleolin {ECO:0000313|EMBL:MPA40051.1}))
HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 514/784 (65.56%), Postives = 595/784 (75.89%), Query Frame = 0
Match: A0A5B6Z7Q8 ((Putative nucleolin {ECO:0000313|EMBL:MPA40051.1}))
HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 514/784 (65.56%), Postives = 595/784 (75.89%), Query Frame = 0
Query: 1 MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQEEEKVEEVSKEEVR-IEENYEEDEDPE-EIFEEGAEEIQQKPPSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEVEEIEEDSEGAIVGEEEGEEVEEINDGHEELGEEDLEHGGEGPTDLAD------AEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPPI-NRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFERPPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDV 773
MPP+ K+ A G G + R RV++ PK + + E E V +EV ++ +E+V+ E + +++ +PE E E + K +EVKESV+EYE+GERLDLEDNEPE E EEYGGVDYDEKE E +D QE + E+ EE E + + E + E E + D AEE+EHHDV KER KRKEFE+FVGGLDKDA+E DLRKVFSEVGEVTEVRLMMNPQT KNKGFAFLRFATVEQAKRAC+++KNPVVNGK+CGVT SQDSDTLFLGNICK WTKEALK+KLKHYGV+N++DLTLVEDSNN+GMNRGFAFLEFSSRSDAMD+F+RLQKRDVVFGVDR AKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR+LLKKYG+IEKIELARNMPSAKRKDFGF+TFDTHD+AV CAK INN ELGEGE+KAKVRARLSRP+ RGKGK + GDF P G +APWGR + PRSLPV ARG+ P +RGL+RP AFRDRR +A PPRGR LAP+P RSYDRR PPVPSYPKSS ++DYGRR++LPPRSR A +YG RVA ERRP YRDEY RGSGY+D+PRS +R A+ R YVDDGYGQRFERPPPSYREGR RDYDSISGSKRPY ALDDV P YA+ +RQSR RL+Y+ GSASQYGD+YS+R+GRS +GY SRSS+ SQD+++LYS RQ GS+ DVG G+YSSS+ DYMSRG DV
Sbjct: 1 MPPRTVKKTAAGPGTK--RTARVTRGTPKAQNRPEVAEESVKVKEVSVEVKEEVKVEEVIEEKPLDKAAAAVSEPEPEPKSEATGMVSAK-----KDDEVKESVDEYEKGERLDLEDNEPEYEPEEYGGVDYDEKEIEQEDVQEEGDEVEEEPEEGDAGEEEEGDMVEEEMEDVHEELEGEEDEEHACEEHDHMVDAIAEEKEHHDVVKERLKRKEFEVFVGGLDKDATEDDLRKVFSEVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRACTEMKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVDDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRAAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVACAKCINNEELGEGENKAKVRARLSRPLQRGKGKYVAHGDFRPGRAVGRGVRAPWGRPV-PRSLPVHGARGIGGRFPVTSDRGLKRPVAFRDRRPFMAMPPRGRP-LAPLP----------RSYDRR-PPVPSYPKSSMKRDYGRRDDLPPRSRAAAEYGSRVA-SERRPVYRDEYSSRGSGYSDLPRSTSRTAAARPYVDDGYGQRFERPPPSYREGRGRDYDSISGSKRPYTALDDVPPRYADAGVRQSRARLDYDLGGSASQYGDAYSDRLGRSNLGYGGSRSSLSSQDTQSLYSSRQ------GSFGSGDVG-GIYSSSFGGDYMSRGADV 756
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z7Q4 ((Putative nucleolin {ECO:0000313|EMBL:MPA40045.1}) (Fragment))
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 503/748 (67.25%), Postives = 579/748 (77.41%), Query Frame = 0
Match: A0A5B6Z7Q4 ((Putative nucleolin {ECO:0000313|EMBL:MPA40045.1}) (Fragment))
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 503/748 (67.25%), Postives = 579/748 (77.41%), Query Frame = 0
Query: 1 MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQEEEKVEEVSKEEVRIEENYEEDEDPEEIFEEGAEEIQQKPPSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQEV--EEIEEDSEGAIVGEEEGEEVEEINDGHE----------ELGEEDL--EHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPPI-NRGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFERPPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDS 732
MPP+ K+ G G + R R ++ K + ++E + V EEV I+ +E+V+ E + +N + +PE E +E S ++EVKESVEEYE+GERLDLEDNEPE E EEYGGVDYDEKE E +D QE E +EE EG I E+EG+ VEE + GEE EH GE D+ DAEE+EHH+V KERRKRKEFEIFVGGLDKDA++ DLRKVFSEVG+VTEVRLMMNPQT KNKGFAFLRFATVEQAKRAC++L+NPVVNGK+CGVT SQDSDTLFLGNICK WTKEALK+KLKHYGV+N++DLTLVEDSNN+GMNRGFAFLEFSSRSDAMD+F+RLQKRDVVFGVDR AKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR+LLKKYG+IEKIELARNMPSAKRKDFGF+TFDTHD+AV CAK INN ELGEGE+KAKVRARLSRP+ RGKGK + GDF P G +APWGR + PRSLPV ARG+ P +RGL+RP AFRDRR +A PPRGR LAP+P RSYDRR PPVPSYPKSS ++DYGRR++LPPRSR A +YG RVA ERRP YRDEY RGSGY+D+PRS +R A+ R YVDDGYGQRFERPPPSYREGR RDYDSISGSKRPY ALDDV P YA+ +RQSR RL+Y+ GSASQYGD+YS+R+GRS +GY SRSS+ SQD+
Sbjct: 51 MPPRTVKKTPPGPGTK--RTSRATRGTAKAQNQQEVTQESVKVEEVSIEVKEEVKVEEVVEEKPVDNKADVSEPEP--EPKSE--TNGTVSLKKEDEVKESVEEYEKGERLDLEDNEPEYEPEEYGGVDYDEKEIEQEDVQEEGDEVVEEPEEGDIGEEDEGDMVEEEMEDIPEELEGEDDDEHAGEEHASEEHAGEEHADMVDAEEKEHHEVVKERRKRKEFEIFVGGLDKDATDDDLRKVFSEVGKVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRACTELRNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVDDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRAAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVACAKCINNEELGEGENKAKVRARLSRPLQRGKGKYVAHGDFRPGRAVGRGVRAPWGRPV-PRSLPVHGARGIGGRFPVTSDRGLKRPVAFRDRRPFMAMPPRGRP-LAPLP----------RSYDRR-PPVPSYPKSSMKRDYGRRDDLPPRSRAAAEYGSRVA-SERRPVYRDEYSSRGSGYSDLPRSTSRTAAARPYVDDGYGQRFERPPPSYREGRGRDYDSISGSKRPYTALDDVPPRYADAGVRQSRARLDYDLGGSASQYGDAYSDRLGRSNLGYGGSRSSLSSQDT 778
BLAST of XM_017371181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZTJ1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520421.1}))
HSP 1 Score: 885.945 bits (2288), Expect = 0.000e+0
Identity = 522/797 (65.50%), Postives = 596/797 (74.78%), Query Frame = 0
Match: A0A5J4ZTJ1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520421.1}))
HSP 1 Score: 885.945 bits (2288), Expect = 0.000e+0
Identity = 522/797 (65.50%), Postives = 596/797 (74.78%), Query Frame = 0
Query: 1 MPPKAAKRGAGGRGKRGGRGGRVSKSVPKEEPKEEPKEIEVPKEEVKIQEEEKVEEVSKEEVRIEENYEEDEDPEEIFEEGAEEIQQKP-----PSFTNQEEVKESVEEYERGERLDLEDNEPEDEAEEYGGVDYDEKEPEHDDFQE----------------VEEIEEDSEGAIVGEEEGEEVEEINDGHEELGEEDLEHGGEGPTDLADAEEQEHHDVFKERRKRKEFEIFVGGLDKDASEADLRKVFSEVGEVTEVRLMMNPQTNKNKGFAFLRFATVEQAKRACSDLKNPVVNGKKCGVTQSQDSDTLFLGNICKAWTKEALKDKLKHYGVDNIEDLTLVEDSNNDGMNRGFAFLEFSSRSDAMDSFRRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKKVFVDGLPASWDEDRVRDLLKKYGKIEKIELARNMPSAKRKDFGFITFDTHDSAVTCAKNINNTELGEGESKAKVRARLSRPVPRGKGKRNSRGDFYPAHGASHGFKAPWGRSIPPRSLPVREARGVRSNLPPIN-RGLRRPPAFRDRREVIAKPPRGRTMLAPIPRSPISRSPISRSYDRRPPPVPSYPKSSSRKDYGRREELPPRSRPAVDYGPRVAPPERRPSYRDEYPPRGSGYTDVPRSAARPASRRAYVDDGYGQRFERPPPSYREGRPRDYDSISGSKRPYGALDDVHPHYAEPVLRQSRPRLEYEPRGSASQYGDSYSERIGRSEIGY-SSRSSIPSQDSRALYSRRQIMDYGGGSYSGSDVGDGMYSSSY-SDYMSRGGDV 773
MPP+A KR A G G + R R ++ PK + +P+ E + + E E +E E+ D E+ E + KP S ++EVKESV+E E+GERLDLEDNEPE E EEYGGVDYDEKE E D QE EE EE+ E G+ EE+E++++ E E+D EH E D+ DAEE+EHH+V KERRKRKEFEIFVGGLDKDA+E DLRK FS VG+VTEVRLMMNPQT KNKGFAFLRFATVEQAKRAC++L+NPVVNGK+CGVT SQDSDTLFLGNICK WTKEALKDKLK YGV+NIEDLTLVEDSNN GMNRGFAFLEFSSRSDAMD+F+RLQKRDV FGVDR AKVSFADSFIDPGDEIMAQVK VFVDGLPASWDEDRVR+LLKKYG IEKIELARNMPSAKRKDFGF+TFDTHD+AV CAK+INN ELGEGE+KAKVRARLSRP+ RGKGK +RGDF P HG +APWGR + PRS PV ARG+ LP + GL+RP AFRDRR +A P RGR LAP+P RSYDRR PPVPSYPKSS ++DYGRR++LPPRSR A +YG RV +RR YRDEY RGSGY+D+PRS +R A+ R YVDDGYGQRFERPPPSYREGR RDYDSISGSKRPY ALDDV P YA+ +RQSR RL+Y+ GS SQYGD+YS+R+GRS +GY SRSSI SQD+++LYS RQ M Y GGS+ DVG GMYSSS+ DYMSRG DV
Sbjct: 1 MPPRAVKRPAAGPGTK--RAARATRGTPKAQ--NQPEVAEESVKVEVVSVEVTEEVTVEEVTVQTVIEEKPVDTAEV-AVSEPEPETKPELNGMVSGKKEDEVKESVDECEKGERLDLEDNEPEYEPEEYGGVDYDEKEIEQVDVQEEGDEVVEEPEEGNVGEEEEEEEEEEEEEEGDMVEEEMEDVHEELEGEAEDDEEHAVEENADMVDAEEEEHHEVVKERRKRKEFEIFVGGLDKDATEDDLRKAFSNVGKVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRACTELRNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKDKLKQYGVENIEDLTLVEDSNNGGMNRGFAFLEFSSRSDAMDAFKRLQKRDVAFGVDRAAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKYGGIEKIELARNMPSAKRKDFGFVTFDTHDAAVACAKSINNEELGEGENKAKVRARLSRPLQRGKGKHVARGDFRPGRAVGHGVRAPWGRPV-PRSFPVHGARGMGGRLPAASGHGLKRPVAFRDRRPFMAMPTRGRP-LAPLP----------RSYDRR-PPVPSYPKSSMKRDYGRRDDLPPRSRAAAEYGSRV-DADRRQVYRDEYSSRGSGYSDLPRSTSRTAATRTYVDDGYGQRFERPPPSYREGRGRDYDSISGSKRPYTALDDVPPRYADAGVRQSRARLDYDIGGSVSQYGDAYSDRLGRSNLGYGGSRSSISSQDTQSLYSSRQGMGYDGGSFGSGDVG-GMYSSSFGGDYMSRGADV 777
| Match Name | Stats | Description |
|---|---|---|
| A0A7J0EVI0 | E-Value: 0.000e+0, PID: 62.90 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A5B6Z7N8 | E-Value: 0.000e+0, PID: 72.43 | (Putative nucleolin {ECO:0000313|EMBL:MPA40049.1})[more] |
| A0A4S4EC96 | E-Value: 0.000e+0, PID: 66.21 | (Uncharacterized protein {ECO:0000313|EMBL:THG1340... [more] |
| A0A2R6QPL3 | E-Value: 0.000e+0, PID: 64.50 | (Heterogeneous nuclear ribonucleoprotein like {ECO... [more] |
| A0A7J7H3U0 | E-Value: 0.000e+0, PID: 65.07 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5946... [more] |
| A0A6A1WX69 | E-Value: 0.000e+0, PID: 70.50 | (Heterogeneous nuclear ribonucleoprotein Q {ECO:00... [more] |
| A0A660KX36 | E-Value: 0.000e+0, PID: 65.37 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8038... [more] |
| A0A5B6Z7Q8 | E-Value: 0.000e+0, PID: 65.56 | (Putative nucleolin {ECO:0000313|EMBL:MPA40051.1})[more] |
| A0A5B6Z7Q4 | E-Value: 0.000e+0, PID: 67.25 | (Putative nucleolin {ECO:0000313|EMBL:MPA40045.1})... [more] |
| A0A5J4ZTJ1 | E-Value: 0.000e+0, PID: 65.50 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8520... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |