Resource Type:
Polypeptide
Name:
XM_017371822.1
Identifier:
XM_017371822.1-protein
Sequence:
MDFGRKRGRQDAVWNGATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQF
GEGCHFLHYVPGGFSALGQMGNMGPGARKPAPPTYADGPAPAIKTKLCNQ
INTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDP
SPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAI
RDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMP
GQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKTAI
Sequence Length:
292
Sequence Checksum:
9e37f0a249e9cf7eeddd36d788a17afa
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371822.1, derives from mRNA, XM_017371822.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QKW7 ((Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:PSS10025.1}))
HSP 1 Score: 386.726 bits (992), Expect = 1.894e-133
Identity = 193/298 (64.77%), Postives = 223/298 (74.83%), Query Frame = 0
HSP 2 Score: 42.743 bits (99), Expect = 4.562e-2
Identity = 23/53 (43.40%), Postives = 27/53 (50.94%), Query Frame = 0
Match: A0A2R6QKW7 ((Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:PSS10025.1}))
HSP 1 Score: 386.726 bits (992), Expect = 1.894e-133
Identity = 193/298 (64.77%), Postives = 223/298 (74.83%), Query Frame = 0
Query: 1 MDFGRKRGRQDA--VWNGATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMG------PGARKPAPPTYADGPAPAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKT 290
M+FGRKR V NG K+S+ E +SF TG+GSKSKPCMKFFSTSGC FG+ CHFLHYVPGG+SA+ QM N G P APP + D P P +KTKLCN+ N+ EGCKFGDKC FAH EMELGRPG+ AYE+PR M + M G + GR P P AA ANFGASATAKISIDASLAGAVIGKGGVNSKQICR+TGVK +I++H++DPNQ+N+ELEG FDQI AS MVRELI + A+ P A P A PA+NFKTKVCE+F KGSCTFG+RCHFAHGA ELR +
Sbjct: 8 MEFGRKRSNPGGAFVGNGGFKKSKQERESFATGIGSKSKPCMKFFSTSGCSFGDSCHFLHYVPGGYSAMAQMTNQGGNPSIPPARNALAPPPFTDSPTPTVKTKLCNKFNSAEGCKFGDKCHFAHGEMELGRPGIPAYENPRGMGS-MPGRFSGRGGPPQPSSAATANFGASATAKISIDASLAGAVIGKGGVNSKQICRITGVKLSIKEHESDPNQRNIELEGTFDQINQASSMVRELINNVAAATH---HHPPAKPTMAAPANNFKTKVCEHFAKGSCTFGERCHFAHGANELRNS 301
HSP 2 Score: 42.743 bits (99), Expect = 4.562e-2
Identity = 23/53 (43.40%), Postives = 27/53 (50.94%), Query Frame = 0
Query: 242 PVRTPMAMPG-QAPPASNFKTKVCENFTKGS-CTFGDRCHFAHGAEELRKTAI 292
P R +A P P KTK+C F C FGD+CHFAHG EL + I
Sbjct: 90 PARNALAPPPFTDSPTPTVKTKLCNKFNSAEGCKFGDKCHFAHGEMELGRPGI 142
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A803KLZ1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:AUR62000047-RA:cds}))
HSP 1 Score: 380.563 bits (976), Expect = 4.867e-131
Identity = 195/301 (64.78%), Postives = 234/301 (77.74%), Query Frame = 0
Match: A0A803KLZ1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:AUR62000047-RA:cds}))
HSP 1 Score: 380.563 bits (976), Expect = 4.867e-131
Identity = 195/301 (64.78%), Postives = 234/301 (77.74%), Query Frame = 0
Query: 1 MDFG--RKRGRQDAVWNG--ATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMGPGARKPAP----PTYADGPA-PAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKTAI 292
MDFG RKRGR +A NG K+SR E++SF +GVGSKSKPC KFFSTSGC FGEGCHFLH+VPGGF A+ QM N+G GA P P P+Y+DGPA P+ KTK+CN+ N+PEGCK+GDKC FAH E +LGRP + +YEDPR M M G GG ++P PPGL AAANFG S+TAK+SIDA+LAGAVIGK G+NSKQICR+TGVK +IRDH+TD N++N++LEG FDQIK AS MV ELI + A++ GP G SNFKT++CENFTKGSCTFGDRCHFAHGA+E+RK+AI
Sbjct: 1 MDFGGPRKRGRPEASLNGNGGFKKSRPESESFQSGVGSKSKPCTKFFSTSGCPFGEGCHFLHHVPGGFKAVSQMLNLG-GAPVPPPRNVAPSYSDGPATPSGKTKICNKFNSPEGCKYGDKCHFAHGERQLGRPSIPSYEDPRGM-GYMSGRMGGMMEPPPPGLGAAANFGESSTAKLSIDAALAGAVIGKSGINSKQICRVTGVKLSIRDHETDSNKRNIQLEGTFDQIKQASSMVEELIRNVKAASGGPPVRQATGHGAPGGGSNFKTRLCENFTKGSCTFGDRCHFAHGADEMRKSAI 299
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZQY1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520294.1}))
HSP 1 Score: 374.785 bits (961), Expect = 9.195e-129
Identity = 199/297 (67.00%), Postives = 237/297 (79.80%), Query Frame = 0
HSP 2 Score: 44.2838 bits (103), Expect = 1.372e-2
Identity = 25/55 (45.45%), Postives = 30/55 (54.55%), Query Frame = 0
HSP 3 Score: 40.0466 bits (92), Expect = 3.141e-1
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 0
Match: A0A5J4ZQY1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520294.1}))
HSP 1 Score: 374.785 bits (961), Expect = 9.195e-129
Identity = 199/297 (67.00%), Postives = 237/297 (79.80%), Query Frame = 0
Query: 1 MDFGRKRGRQDA--VWNGATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMGPGARKP------APPTYADGPAPAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRK 289
M+FGRKRG+ DA V NG K+S+ E +SF TG+GSKSKPCMKFFSTSGCQFGEGCHFLHYVPGG++ + QM NMG P APP + DG AP +K+KLCN+ NT EGCKFGDKC FAH EMELG+P + A+EDP+AM P+ G GRV+P PPGLAAAANFGASATAKISIDASLAGA+IGKGG NSKQICR+TG K +I++H++DP+Q+N+ELEG FDQI AS MVRELI+ + A+A GP + P A P A PASNFKTK+C+NF KG+CTFG+RCHFAHG ELR+
Sbjct: 3 MEFGRKRGKSDAAFVGNGGFKKSKQEMESFSTGIGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGYNVVAQMTNMGGNPGTPVGRNARAPPPFTDGAAPTVKSKLCNKFNTAEGCKFGDKCHFAHGEMELGKPIIPAHEDPQAM-GPIAGRLPGRVEPPPPGLAAAANFGASATAKISIDASLAGAIIGKGGANSKQICRLTGAKLSIKEHESDPSQRNIELEGTFDQIGHASAMVRELIVNV-AAATGPAKRPTAKPTLATPASNFKTKMCDNFAKGTCTFGERCHFAHGVGELRQ 297
HSP 2 Score: 44.2838 bits (103), Expect = 1.372e-2
Identity = 25/55 (45.45%), Postives = 30/55 (54.55%), Query Frame = 0
Query: 245 TPMAMPGQAPP------ASNFKTKVCENF-TKGSCTFGDRCHFAHGAEELRKTAI 292
TP+ +APP A K+K+C F T C FGD+CHFAHG EL K I
Sbjct: 83 TPVGRNARAPPPFTDGAAPTVKSKLCNKFNTAEGCKFGDKCHFAHGEMELGKPII 137
HSP 3 Score: 40.0466 bits (92), Expect = 3.141e-1
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 0
Query: 74 GPGARKPAPPTYADGPAPAIKTKLCNQINTPEG-CKFGDKCRFAHSEMELGRP 125
GP R A PT A PA KTK+C+ N +G C FG++C FAH EL +P
Sbjct: 249 GPAKRPTAKPTLAT-PASNFKTKMCD--NFAKGTCTFGERCHFAHGVGELRQP 298
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z5Z2 ((Putative KH domain-containing protein / zinc finger family protein isoform 1 {ECO:0000313|EMBL:MPA38433.1}))
HSP 1 Score: 374.785 bits (961), Expect = 9.946e-129
Identity = 203/303 (67.00%), Postives = 241/303 (79.54%), Query Frame = 0
Match: A0A5B6Z5Z2 ((Putative KH domain-containing protein / zinc finger family protein isoform 1 {ECO:0000313|EMBL:MPA38433.1}))
HSP 1 Score: 374.785 bits (961), Expect = 9.946e-129
Identity = 203/303 (67.00%), Postives = 241/303 (79.54%), Query Frame = 0
Query: 1 MDFG--RKRGRQDAVWNG--ATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQM----GNMGPGARKPAPP-TYADGPAP-AIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPA-SNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKTAI 292
M+FG RKRGR +A NG K+S+ ET+SF TG+GSKSKPC KFFSTSGC FGEGCHFLHYVPGG A+ QM P AR P PP +++DG +P A+KT+LCN+ NT EGCKFGDKC FAH E ELG+P + ++EDPRAM PM G G R++P PGLAAAA+FGASATAKIS+DASLAGA+IGKGGVNSKQICR+TG K +IR+H++DPNQ+N+ELEG FDQIK AS MVRELIM IG+ + P+R AMPG AP A SNFKTK+CENFTKGSCTFG+RCHFAHGA+E+RK +
Sbjct: 1 MEFGAARKRGRPEAALNGNGGFKKSKHETESFSTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVNQMLGSNPTFPPSARNPVPPPSFSDGSSPPAVKTRLCNKYNTAEGCKFGDKCHFAHGEWELGKPTVPSHEDPRAM-GPMAGRLGRRMEPPSPGLAAAASFGASATAKISVDASLAGAIIGKGGVNSKQICRLTGAKLSIREHESDPNQRNIELEGTFDQIKQASAMVRELIMNIGSGSGPPMRN-HAMPGSAPGAGSNFKTKICENFTKGSCTFGERCHFAHGADEMRKPGM 301
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZD29 ((zinc finger CCCH domain-containing protein 14-like {ECO:0000313|RefSeq:XP_015875946.1}))
HSP 1 Score: 374.015 bits (959), Expect = 1.981e-128
Identity = 190/304 (62.50%), Postives = 231/304 (75.99%), Query Frame = 0
Match: A0A6P3ZD29 ((zinc finger CCCH domain-containing protein 14-like {ECO:0000313|RefSeq:XP_015875946.1}))
HSP 1 Score: 374.015 bits (959), Expect = 1.981e-128
Identity = 190/304 (62.50%), Postives = 231/304 (75.99%), Query Frame = 0
Query: 1 MDFG--RKRGRQDAVWNG--ATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMG------PGARKPA-PPTYADGPAP-AIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKTAI 292
MDFG RKRGR +A NG K+S+ E +SF +G+GSKSKPC KFFSTSGC FGEGCHFLHYVPGG A+ QM N+G P AR A PP++ DG +P A+KT+LCN+ N+ EGCKFGDKC FAH E ELG+P +YEDPRAM P+ G GGR++P AAA+FGAS+T K+S+DASLAGA+IGK GVNSKQICR+TG K +IRDH++DPN +N+ELEG+FDQIK A+ MVRELI +G+ A P++ +M G P +NFKTK+CENF KGSCTFG+RCHFAHGAEELRK I
Sbjct: 1 MDFGGGRKRGRNEAALNGNGGLKKSKSELESFSSGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMINLGVNQTLPPAARNSAVPPSFPDGSSPPAVKTRLCNKFNSAEGCKFGDKCHFAHGEWELGKPNAPSYEDPRAM-GPLPGRMGGRIEPPQQSHGAAASFGASSTCKVSVDASLAGAIIGKNGVNSKQICRVTGAKLSIRDHESDPNLRNIELEGSFDQIKQANAMVRELIANVGSGAGNPMKN-HSMGGSG-PGNNFKTKLCENFAKGSCTFGERCHFAHGAEELRKPGI 301
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z2Z1 ((Putative zinc finger CCCH domain-containing protein 14 {ECO:0000313|EMBL:MPA38434.1}) (2.7.7.9 {ECO:0000313|EMBL:MPA38434.1}))
HSP 1 Score: 370.933 bits (951), Expect = 2.446e-127
Identity = 199/297 (67.00%), Postives = 234/297 (78.79%), Query Frame = 0
HSP 2 Score: 43.5134 bits (101), Expect = 2.561e-2
Identity = 25/55 (45.45%), Postives = 30/55 (54.55%), Query Frame = 0
HSP 3 Score: 39.6614 bits (91), Expect = 4.461e-1
Identity = 27/78 (34.62%), Postives = 35/78 (44.87%), Query Frame = 0
Match: A0A5B6Z2Z1 ((Putative zinc finger CCCH domain-containing protein 14 {ECO:0000313|EMBL:MPA38434.1}) (2.7.7.9 {ECO:0000313|EMBL:MPA38434.1}))
HSP 1 Score: 370.933 bits (951), Expect = 2.446e-127
Identity = 199/297 (67.00%), Postives = 234/297 (78.79%), Query Frame = 0
Query: 1 MDFGRKRGRQDA--VWNGATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMGPGARKP------APPTYADGPAPAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRK 289
M+FGRKRG+ D V NG K+S+ E +SF TG+GSKSKPCMKFFSTSGC FGEGCHFLHYVPGG+SA+ QM N+G P APP + DG AP +K+KLCN+ NT EGCKFGDKC FAH EMELG+P + A+EDPRAM PM RV+P PPGLAAAANFGASATAKISID+SLAGA+IGKGG NSKQICR+TGVK +I+DH++DP+Q+N+ELEGNFDQI AS MV ELI+ +GA A GP + P A P A PASN+KTK+C+ F KGSCTFG+RCHFAHG ELR+
Sbjct: 3 MEFGRKRGKPDGAFVGNGGFKKSKQEMESFSTGIGSKSKPCMKFFSTSGCSFGEGCHFLHYVPGGYSAIAQMTNLGGNPGTPVGRNARAPPPFTDGAAPTVKSKLCNKFNTLEGCKFGDKCHFAHGEMELGKPFIPAHEDPRAM-GPMVSRLPRRVEPPPPGLAAAANFGASATAKISIDSSLAGAIIGKGGANSKQICRLTGVKLSIKDHESDPSQRNIELEGNFDQIGQASAMVHELIVNVGA-ATGPAKNPTAKPTLATPASNYKTKMCDKFAKGSCTFGERCHFAHGTSELRQ 297
HSP 2 Score: 43.5134 bits (101), Expect = 2.561e-2
Identity = 25/55 (45.45%), Postives = 30/55 (54.55%), Query Frame = 0
Query: 245 TPMAMPGQAPP------ASNFKTKVCENF-TKGSCTFGDRCHFAHGAEELRKTAI 292
TP+ +APP A K+K+C F T C FGD+CHFAHG EL K I
Sbjct: 83 TPVGRNARAPPPFTDGAAPTVKSKLCNKFNTLEGCKFGDKCHFAHGEMELGKPFI 137
HSP 3 Score: 39.6614 bits (91), Expect = 4.461e-1
Identity = 27/78 (34.62%), Postives = 35/78 (44.87%), Query Frame = 0
Query: 60 VPGGFSALGQMGNM------------GPGARKPAPPTYADGPAPAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRP 125
+ G F +GQ M GP A PT A PA KTK+C++ C FG++C FAH EL +P
Sbjct: 223 LEGNFDQIGQASAMVHELIVNVGAATGPAKNPTAKPTLAT-PASNYKTKMCDKF-AKGSCTFGERCHFAHGTSELRQP 298
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VA91 ((Uncharacterized protein {ECO:0000313|EMBL:CDP17507.1}))
HSP 1 Score: 370.548 bits (950), Expect = 3.680e-127
Identity = 190/304 (62.50%), Postives = 225/304 (74.01%), Query Frame = 0
Match: A0A068VA91 ((Uncharacterized protein {ECO:0000313|EMBL:CDP17507.1}))
HSP 1 Score: 370.548 bits (950), Expect = 3.680e-127
Identity = 190/304 (62.50%), Postives = 225/304 (74.01%), Query Frame = 0
Query: 1 MDFG--RKRGRQDAVWNGA----TKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMGPG----ARKPA-PPTYADGPAP-AIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKTAI 292
M+FG RKRGR D K+S+ ET+SF +G+GSKSKPC KFFSTSGCQFGEGCHFLHYVPGG A+ Q+ P +R P PP++ DG +P A+KT+LCN+ NT EGCKFGDKC FAH ELG+P +EDPRA P+ G +GGR++ +PP AA +FGASATAKIS+DASLAGA+IGKGGVNSK ICR TG K AIRDHD+DPN KN+ELEG FDQIK A+ MVRELI + ++AR P++ G A PASNFKTK+CENF KGSCTFGDRCHFAHG EELR + I
Sbjct: 1 MEFGGARKRGRPDGGAATNGNGGIKKSKQETESFSSGIGSKSKPCTKFFSTSGCQFGEGCHFLHYVPGGIKAVTQILGSNPALPAASRNPVVPPSFPDGSSPPAVKTRLCNKYNTAEGCKFGDKCHFAHGAWELGKPTAPVHEDPRAT-GPLPGRFGGRMESTPPDFGAAGSFGASATAKISVDASLAGAIIGKGGVNSKHICRTTGAKLAIRDHDSDPNSKNIELEGTFDQIKLATQMVRELIANVSSAARPPLKNHGGPKGSA-PASNFKTKLCENFAKGSCTFGDRCHFAHGEEELRSSGI 302
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VQ88 ((zinc finger CCCH domain-containing protein 14-like {ECO:0000313|RefSeq:XP_009767111.1}))
HSP 1 Score: 368.237 bits (944), Expect = 2.452e-126
Identity = 190/297 (63.97%), Postives = 222/297 (74.75%), Query Frame = 0
Match: A0A1U7VQ88 ((zinc finger CCCH domain-containing protein 14-like {ECO:0000313|RefSeq:XP_009767111.1}))
HSP 1 Score: 368.237 bits (944), Expect = 2.452e-126
Identity = 190/297 (63.97%), Postives = 222/297 (74.75%), Query Frame = 0
Query: 1 MDFGRKRGRQDA--VWNGATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMGPG--ARKPAPPTYADGPAPAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRA-PMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKTAI 292
MD RKR R DA NG K+ + E DS +G+GSKSKPC KFFST+GC FGE CHFLHYVPGG++A+ QM M P R A P ++G APA+KTKLCN+ NT EGCKFGDKC FAH E E+G+P + + EDPRAM P+ G +GGR++P+ G AA+FG SATAKIS+DASLAGA+IGKGGV+SKQICR TG K AIRDH+TD N +N+ELEG F+QI AS MVRELI +G S GP RTP G APP SNFKTK+CENF KGSCTFGDRCHFAHGA ELRKT +
Sbjct: 1 MDI-RKRNRNDAGANANGGVKKYKPEMDSLSSGIGSKSKPCTKFFSTAGCPFGENCHFLHYVPGGYNAVAQMMKMAPAPSLRNTAAPPMSNGNAPAVKTKLCNKYNTTEGCKFGDKCNFAHGEWEIGKPIMPSQEDPRAMGGGPVPGRFGGRIEPAVSG--PAASFGTSATAKISVDASLAGAIIGKGGVHSKQICRQTGAKLAIRDHETDKNLRNIELEGTFEQISQASAMVRELINSLG-SVGGPGRTPAIPGGAAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAAELRKTGV 293
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2M514 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL07p023611:mrna}))
HSP 1 Score: 368.237 bits (944), Expect = 3.063e-126
Identity = 187/299 (62.54%), Postives = 226/299 (75.59%), Query Frame = 0
Match: A0A7N2M514 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL07p023611:mrna}))
HSP 1 Score: 368.237 bits (944), Expect = 3.063e-126
Identity = 187/299 (62.54%), Postives = 226/299 (75.59%), Query Frame = 0
Query: 5 RKRGRQDAVWN--GATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMGPGARKPA--------PPTYADGPAPAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPG-QAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRKTAI 292
RKRGR +A +N G K+S+ E DS +GVGSKSKPC KFFST+GC FGE CHFLHYVPGG++A+ QM N+ P PA PP +G PA+KT+LCN+ NT EGCKFGDKC FAH+E ELG+P ++EDPRAM PM G G RV+P P A++FGASATAKIS+DASLAGA+IGKGGVNSKQICR TG K +IRDH++DPN +N+ELEG F+QIK+AS MVR+LI + S GP ++ MPG APP SN+KTK+CENFTKGSCTFG+RCHFAHGA ELRK+ +
Sbjct: 4 RKRGRPEAAFNANGGFKKSKQEMDSL-SGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPAI--PAATRNMSGPPPAIPNGSTPAVKTRLCNKYNTAEGCKFGDKCHFAHNEWELGKPIAPSHEDPRAMGPPMPGRMGARVEPHP--AVPASSFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQIKEASAMVRQLIETVSLS--GPPKSHGMMPGAAAPPGSNYKTKLCENFTKGSCTFGERCHFAHGAAELRKSGV 295
BLAST of XM_017371822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UHN4 ((Uncharacterized protein {ECO:0000313|EMBL:CDP07689.1}))
HSP 1 Score: 367.851 bits (943), Expect = 3.337e-126
Identity = 191/297 (64.31%), Postives = 220/297 (74.07%), Query Frame = 0
HSP 2 Score: 41.5874 bits (96), Expect = 1.138e-1
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 0
HSP 3 Score: 39.2762 bits (90), Expect = 5.968e-1
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 0
Match: A0A068UHN4 ((Uncharacterized protein {ECO:0000313|EMBL:CDP07689.1}))
HSP 1 Score: 367.851 bits (943), Expect = 3.337e-126
Identity = 191/297 (64.31%), Postives = 220/297 (74.07%), Query Frame = 0
Query: 1 MDFG-RKRGRQDAVW--NGATKRSRDETDSFGTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPGGFSALGQMGNMG-----PGARKPAPPTYADGPAPAIKTKLCNQINTPEGCKFGDKCRFAHSEMELGRPGLSAYEDPRAMRAPMGGAYGGRVDPSPPGLAAAANFGASATAKISIDASLAGAVIGKGGVNSKQICRMTGVKFAIRDHDTDPNQKNVELEGNFDQIKDASGMVRELIMRIGASARGPVRTPMAMPGQAPPASNFKTKVCENFTKGSCTFGDRCHFAHGAEELRK 289
M+FG RKR R D + NG K+SRDE +SF TGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPG +SA Q+ N+G PG R ++DGP +KTKLC + NTPEGC+FGDKC FAH +MELG+ Y+DPR+M PMG G +PSPPGL AAA+FG SATAKISIDASLAGA+IGK GVNSK ICR TGVK +I+DH+TD NQ+N+ELEG+FDQIK ASGMVRELI IG T + PPA +K+K+CENF KGSCTFGDRCHFAH A ELRK
Sbjct: 1 MEFGGRKRERPDGAFTGNGGYKKSRDELESFTTGVGSKSKPCMKFFSTSGCQFGEGCHFLHYVPG-YSAHSQLANLGANPAVPGGRNVP---FSDGPTLTVKTKLCTKFNTPEGCRFGDKCHFAHGDMELGKSLAPGYQDPRSM-GPMG-RLSGHFEPSPPGLGAAASFGTSATAKISIDASLAGAIIGKNGVNSKHICRATGVKLSIKDHETDSNQRNIELEGSFDQIKQASGMVRELIANIGGPTSRTSNTSGSFGRGVPPARQYKSKMCENFPKGSCTFGDRCHFAHSASELRK 291
HSP 2 Score: 41.5874 bits (96), Expect = 1.138e-1
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 0
Query: 255 PASNFKTKVCENF-TKGSCTFGDRCHFAHGAEELRKT 290
P KTK+C F T C FGD+CHFAHG EL K+
Sbjct: 93 PTLTVKTKLCTKFNTPEGCRFGDKCHFAHGDMELGKS 129
HSP 3 Score: 39.2762 bits (90), Expect = 5.968e-1
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 0
Query: 89 PAPAIKTKLCNQINTPEG-CKFGDKCRFAHSEMELGRP 125
PA K+K+C N P+G C FGD+C FAHS EL +P
Sbjct: 257 PARQYKSKMCE--NFPKGSCTFGDRCHFAHSASELRKP 292
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6QKW7 | E-Value: 1.894e-133, PID: 64.77 | (Zinc finger CCCH domain-containing protein {ECO:0... [more] |
| A0A803KLZ1 | E-Value: 4.867e-131, PID: 64.78 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A5J4ZQY1 | E-Value: 9.195e-129, PID: 67.00 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8520... [more] |
| A0A5B6Z5Z2 | E-Value: 9.946e-129, PID: 67.00 | (Putative KH domain-containing protein / zinc fing... [more] |
| A0A6P3ZD29 | E-Value: 1.981e-128, PID: 62.50 | (zinc finger CCCH domain-containing protein 14-lik... [more] |
| A0A5B6Z2Z1 | E-Value: 2.446e-127, PID: 67.00 | (Putative zinc finger CCCH domain-containing prote... [more] |
| A0A068VA91 | E-Value: 3.680e-127, PID: 62.50 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1750... [more] |
| A0A1U7VQ88 | E-Value: 2.452e-126, PID: 63.97 | (zinc finger CCCH domain-containing protein 14-lik... [more] |
| A0A7N2M514 | E-Value: 3.063e-126, PID: 62.54 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A068UHN4 | E-Value: 3.337e-126, PID: 64.31 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0768... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |