Resource Type:
Genetic Marker
Name:
MK004504 K1948
Identifier:
MK004504_K1948
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004504 K1948, is adjacent to primer, K1948_X. |
| The genetic_marker, MK004504 K1948, is adjacent to primer, K1948_Y. |
| The genetic_marker, MK004504 K1948, is adjacent to primer, K1948_Common. |
| The genetic_marker, MK004504 K1948, is located in gene, DCAR_019569. |
| The genetic_marker, MK004504 K1948, is located in gene, LOC108223781. |
| The marker_locus, K1948, is an instance of genetic_marker, MK004504 K1948. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG full map | CH5 | 62.591 | K1948 | MapViewer |
| 2016 80592 NG full map | Chr5 | 49.16 | K1948 | MapViewer |
| 2016 70796 NG full map | Chr5 | 4.606 | K1948 | MapViewer |
| 2015 Br1091×HM1 | Chr5 | 49.16 | K1948 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr5 | 49.16 | K1948 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr5 | 50.624 | K1948 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr5 | 51.223 | K1948 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr5 | 51.223 | K1948 | MapViewer |
| 2016 80592 NG bin map | Chr5 | 49.16 | K1948 | MapViewer |
| 2016 70796 NG bin map | Chr5 | 4.606 | K1948 | MapViewer |
| 2015 MB Merged | Chr5 | 51.223 | K1948 | MapViewer |
| 2016 Integ NG bin map | CH5 | 62.314 | K1948 | MapViewer |
Synonyms:
- MK004504
Sequence Coordinates:
DCARv2_Chr5:40135029..40135081-
View location in JBrowse:
Sequence:
CTGATTCTTTCCTCCAGTTTCACCAACTCCAATCGTGRGATCCTGCTTAG
ATGACTTGTTTTGAACATCAT
Sequences:
>MK004504_K1948 ID=MK004504_K1948; Name=MK004504 K1948; organism=Daucus carota; type=genetic_marker
CTGATTCTTTCCTCCAGTTTCACCAACTCCAATCGTGRGATCCTGCTTAG
ATGACTTGTTTTGAACATCAT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CTGATTCTTTCCTCCAGTTTCACCAACTCCAATCGTG
Three Prime Flanking Region:
GATCCTGCTTAGATGACTTGTTTTGAACATCAT
SNP:
A/G