Resource Type:
Genetic Marker
Name:
MK005087 K2531
Identifier:
MK005087_K2531
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005087 K2531, is adjacent to primer, K2531_X. |
| The genetic_marker, MK005087 K2531, is adjacent to primer, K2531_Y. |
| The genetic_marker, MK005087 K2531, is adjacent to primer, K2531_Common. |
| The genetic_marker, MK005087 K2531, is located in gene, DCAR_016263. |
| The genetic_marker, MK005087 K2531, is located in gene, LOC108219979. |
| The marker_locus, K2531, is an instance of genetic_marker, MK005087 K2531. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 70349 | Chromosome_5 | 68.023 | K2531 | MapViewer |
| 2016 70796 NG bin map | Chr5 | 67.973 | K2531 | MapViewer |
| 2016 Integ NG bin map | CH5 | 3.507 | K2531 | MapViewer |
| 2016 Integ NG full map | CH5 | 4.345 | K2531 | MapViewer |
| 2016 70349 NG full map | Chr5 | 68.023 | K2531 | MapViewer |
| 2016 70349 NG bin map | Chr5 | 68.023 | K2531 | MapViewer |
| 2016 70796 NG full map | Chr5 | 67.973 | K2531 | MapViewer |
Synonyms:
- MK005087
Sequence Coordinates:
DCARv2_Chr5:1775835..1775882-
View location in JBrowse:
Sequence:
ATCGATTTCTGTGCCGGAGAGTGGAGAGGAGGAGGGTRATTTTGGGAAGA
TTTTCTTGTCTGATGTAGTGG
Sequences:
>MK005087_K2531 ID=MK005087_K2531; Name=MK005087 K2531; organism=Daucus carota; type=genetic_marker
ATCGATTTCTGTGCCGGAGAGTGGAGAGGAGGAGGGTRATTTTGGGAAGA
TTTTCTTGTCTGATGTAGTGG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ATCGATTTCTGTGCCGGAGAGTGGAGAGGAGGAGGGT
Three Prime Flanking Region:
ATTTTGGGAAGATTTTCTTGTCTGATGTAGTGG
SNP:
A/G