Resource Type:
Genetic Marker
Name:
MK005438 K2882
Identifier:
MK005438_K2882
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005438 K2882, is adjacent to primer, K2882_X. |
| The genetic_marker, MK005438 K2882, is adjacent to primer, K2882_Y. |
| The genetic_marker, MK005438 K2882, is adjacent to primer, K2882_Common. |
| The genetic_marker, MK005438 K2882, is located in gene, DCAR_022925. |
| The genetic_marker, MK005438 K2882, is located in gene, LOC108228002. |
| The marker_locus, K2882, is an instance of genetic_marker, MK005438 K2882. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG bin map | Chr6 | 15.158 | K2882 | MapViewer |
| 2016 70349 NG full map | Chr6 | 15.158 | K2882 | MapViewer |
| 2014 70349 | Chromosome_6 | 15.158 | K2882 | MapViewer |
| 2016 Integ NG bin map | CH6 | 21.195 | K2882 | MapViewer |
| 2016 Integ NG full map | CH6 | 21.939 | K2882 | MapViewer |
| 2016 70796 NG full map | Chr6 | 7.564 | K2882 | MapViewer |
Synonyms:
- MK005438
Sequence Coordinates:
DCARv2_Chr6:3649523..3649571+
View location in JBrowse:
Sequence:
ACAAGCCCTTGTCTTTTGTCCACTCAAAACTCCTATTSGCCAAAACCCTA
ACCCCCAGGAACTCAGTTTCT
Sequences:
>MK005438_K2882 ID=MK005438_K2882; Name=MK005438 K2882; organism=Daucus carota; type=genetic_marker
ACAAGCCCTTGTCTTTTGTCCACTCAAAACTCCTATTSGCCAAAACCCTA
ACCCCCAGGAACTCAGTTTCT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ACAAGCCCTTGTCTTTTGTCCACTCAAAACTCCTATT
Three Prime Flanking Region:
GCCAAAACCCTAACCCCCAGGAACTCAGTTTCT
SNP:
C/G