MK003780 K1224

Resource Type: 
Genetic Marker
Name: 
MK003780 K1224
Identifier: 
MK003780_K1224
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK003780 K1224, is adjacent to primer, K1224_X.
The genetic_marker, MK003780 K1224, is adjacent to primer, K1224_Y.
The genetic_marker, MK003780 K1224, is adjacent to primer, K1224_Common.
The genetic_marker, MK003780 K1224, is located in gene, DCAR_021340.
The genetic_marker, MK003780 K1224, is located in gene, LOC108192942.
The marker_locus, K1224, is an instance of genetic_marker, MK003780 K1224.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG full mapChr648.007K1224MapViewer
2016 Integ NG full mapCH657.522K1224MapViewer
2016 70796 NG full mapChr651.89K1224MapViewer
2014 70349Chromosome_648.007K1224MapViewer
2016 Integ NG bin mapCH653.968K1224MapViewer
Synonyms: 
  • MK003780
Sequence Coordinates: 
DCARv2_Chr6:23896296..23896351-
View location in JBrowse: 
DCARv2_Chr6:23896296..23896351-
Sequence: 
CAAACCTAGGGTTTGCAGAACCTTGCTTTTTACTCACRCTTGTGTTTCTC
CTTTATGGATCATTACAGAAG
Sequences: 
>MK003780_K1224 ID=MK003780_K1224; Name=MK003780 K1224; organism=Daucus carota; type=genetic_marker
CAAACCTAGGGTTTGCAGAACCTTGCTTTTTACTCACRCTTGTGTTTCTC
CTTTATGGATCATTACAGAAG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CAAACCTAGGGTTTGCAGAACCTTGCTTTTTACTCAC
Three Prime Flanking Region: 
CTTGTGTTTCTCCTTTATGGATCATTACAGAAG
SNP: 
A/G