MK002184 ESSR-079 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK002184 ESSR-079

Identifier:

MK002184_ESSR_079

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 5 relationships.
Relationships
The genetic_marker, MK002184 ESSR-079, is adjacent to primer, ESSR-079-F.
The genetic_marker, MK002184 ESSR-079, is adjacent to primer, ESSR-079-R.
The genetic_marker, MK002184 ESSR-079, is located in gene, DCAR_019798.
The genetic_marker, MK002184 ESSR-079, is located in gene, LOC108222891.
The marker_locus, ESSR-079, is an instance of genetic_marker, MK002184 ESSR-079.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 70796 NG bin map	Chr5	0	ESSR-079	MapViewer
2011 SS1061QTL	1061QTL-2	1.02	ESSR-079	MapViewer
2016 Integ NG full map	CH5	67.376	ESSR-079	MapViewer
2016 70796 NG full map	Chr5	0	ESSR-079	MapViewer
2011 SS1061	1061-5	0.31	ESSR-079	MapViewer
2016 Integ NG bin map	CH5	67.385	ESSR-079	MapViewer

Synonyms:

MK002184

Sequence Coordinates:

DCARv2_Chr5:41806659..41806936+

View location in JBrowse:

DCARv2_Chr5:41806659..41806936+

Sequence:

TCCCTTTGCCGTTGAAATACACGAACGTATACAAAGTCACAACACCTAGG
GGAATAGAAAGCGCGATTCGCTGCTGCTGCTGTTTCCGATTGCGAATAGA
AGCAGGGTTGATTTGGGTTGTGAATGGCGTCAAACGTAGCAGTAGCTGTT
GTGCTGGGAAGCCTACTAGCTTTGTGGAGTTGTTCAGTCTTTGCAGCATT
ACCAGATTCAGACACAACATTCGAGGACAATGACAAACATCTCGTCAACC
AACTC

Sequences:

Primary genetic marker Sequence (255bp)

>MK002184_ESSR_079 ID=MK002184_ESSR_079; Name=MK002184 ESSR-079; organism=Daucus carota; type=genetic_marker
TCCCTTTGCCGTTGAAATACACGAACGTATACAAAGTCACAACACCTAGG
GGAATAGAAAGCGCGATTCGCTGCTGCTGCTGTTTCCGATTGCGAATAGA
AGCAGGGTTGATTTGGGTTGTGAATGGCGTCAAACGTAGCAGTAGCTGTT
GTGCTGGGAAGCCTACTAGCTTTGTGGAGTTGTTCAGTCTTTGCAGCATT
ACCAGATTCAGACACAACATTCGAGGACAATGACAAACATCTCGTCAACC
AACTC

This is the primary representative sequence for this feature.

Sequence Length:

255