MK006434 K3878

Resource Type: 
Genetic Marker
Name: 
MK006434 K3878
Identifier: 
MK006434_K3878
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006434 K3878, is adjacent to primer, K3878_X.
The genetic_marker, MK006434 K3878, is adjacent to primer, K3878_Y.
The genetic_marker, MK006434 K3878, is adjacent to primer, K3878_Common.
The genetic_marker, MK006434 K3878, is located in gene, DCAR_018578.
The genetic_marker, MK006434 K3878, is located in gene, LOC108222871.
The marker_locus, K3878, is an instance of genetic_marker, MK006434 K3878.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70796 NG full mapChr517.915K3878MapViewer
2016 Integ NG full mapCH549.707K3878MapViewer
Synonyms: 
  • MK006434
Sequence Coordinates: 
DCARv2_Chr5:31242199..31242261+
View location in JBrowse: 
DCARv2_Chr5:31242199..31242261+
Sequence: 
AAGTGCCCAAAAAAGAAAGCTCTAAAAAGAAAATTAGYTTAGGTGCTATT
ATTGCTATTGCAGCTGGAGGG
Sequences: 
>MK006434_K3878 ID=MK006434_K3878; Name=MK006434 K3878; organism=Daucus carota; type=genetic_marker
AAGTGCCCAAAAAAGAAAGCTCTAAAAAGAAAATTAGYTTAGGTGCTATT
ATTGCTATTGCAGCTGGAGGG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AAGTGCCCAAAAAAGAAAGCTCTAAAAAGAAAATTAG
Three Prime Flanking Region: 
TTAGGTGCTATTATTGCTATTGCAGCTGGAGGG
SNP: 
C/T