BGI Tandem Repeats Annotation

Resource Type: 
Analysis
Name: 
BGI Tandem Repeats Annotation
Description: 

Tandem repeats were detected using Tandem Repeats Finder v4.07b.

The annotation file used for JBrowse can be downloaded from the link below.

Data from this analysis can be viewed in JBrowse here.

File: 
FileType
DCARv2 BGI Tandem Repeats Annotation JBrowse GFF3GFF3
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There is 1 relationship.
Relationships
The analysis, BGI Tandem Repeats Annotation, is a part of analysis, Carrot Genome Assembly DCARv2.
Program, Pipeline, Workflow or Method Name: 
Tandem Repeats Finder
Program Version: 
4.07b
Date Performed: 
Friday, October 18, 2013 - 00:00
Data Source: 
Source Name
: BGI
Organism: 
NameCommon NameComment
Daucus carota subsp. sativus
Carrot
For a general overview of carrot, see the Carrot Facts Page