CarrotOmics Marker Types

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Marker Type Marker Abbreviation Full Marker Name or Target Technology Reference
Fingerprinting ISSR Inter-simple sequence repeat Zietkiewicz et al., 1994
RAPD Random amplified polymorphic DNA Williams et al., 1990
AFLP Amplified Fragment Length Polymorphism Vos et al., 1995
SRAP Sequence-Related Amplified Polymorphism Li and Quiros, 2001
DArT Diversity Arrays Technology Jaccoud et al., 2001, Wenzl et al., 2004
Feature-specific PCR with cleavage CAPS Cleaved amplified polymorphic sequences Konieczny and Ausubel, 1993
Feature-specific PCR EST marker Expressed Sequence Tag Parkinson and Blaxter, 2009
EST-SSR SSR sequence from an EST Ellis and Burke, 2007
Gene Gene sequence  
SCAR Sequence Characterized Amplified Regions Paran and Michelmore, 1993
SSR Microsatellites, Simple Sequence Repeats Tautz, 1989
SAMPL Selective Amplification of Microsatellite Polymorphic Loci Vivek, 1999
STS Sequence-Tagged Site info at NCBI
TD Transposon Display Van den Broeck et al. 1998, Vandenbussche et al. 2013
Feature-specific Other Isozyme Isozyme Schulz et al., 1993
SNP-specific SNP Single nucleotide polymorphism Ahmadian et al., 2000
Hybridization RFLP Restriction Fragment Length Polymorphism Bonierbale et al., 1988
FISH Fluorescent In-Situ Hybridization Iovene et al., 2008
Misc. markers HRM High resolution melting marker Liew et al., 2004
N/A Chromosome end placeholder markers for FISH maps