Carrot Genome Assembly DCARv3 Gaps

Resource Type:

Analysis

Name:

Description:

This analysis represents the JBrowse annotation of gaps in the assembled carrot genome sequence "Carrot Genome Assembly DH1 v3.0".

This JBrowse track shows all gaps in the genome assembly consisting of runs of 100 'N's, which represent gaps of unknown size. There are 554 gaps in the entire genome assembly.

File:


File	Type
DCARv3 Genome Assembly gaps	GFF3

Publication:

Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.

Relationship:

There is 1 relationship.
Relationships
The analysis, Carrot Genome Assembly DCARv3 Gaps, is a part of analysis, Carrot Genome Assembly DH1 v3.0.

Program, Pipeline, Workflow or Method Name:

DCARv3 post-assembly annotation of gaps

Program Version:

n/a

Date Performed:

Wednesday, October 9, 2019 - 11:26

Data Source:

Source Name: : Carrot Genome Assembly DH1 v3.0

Organism:


Name	Common Name	Comment
Daucus carota subsp. sativus	Carrot	For a general overview of carrot, see the Carrot Facts Page

Biomaterial:


Name	Description
SAMN03216637	This biosample is also known by its germplasm accession of DH1, please see this record for more details.

Project:


Name	Description
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot	The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.