Resource Type:
Genetic Map
Name:
2016 70796 NG bin map
Description:
Genetic maps of three populations were used to establish a consensus map suitable for guiding the construction of superscaffolds and pseudomolecules. Each linkage map consisted of a “full” dataset including all the segregating markers mapped in each population and a “bin” data set, consisting of markers representing unique recombination events.
This is the "bin" data set map, the "full" data set map can be found here.
The F4 population 70796, consisting of 150 individuals, resulted from an original cross between B493 (an inbred with orange roots) and QAL (a wild carrot with white branching roots collected in Wisconsin-USA). The 70796 genetic map included 920 co-dominant markers (304 bins) with known sequence information.
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Map Type:
genetic
Organism:
| Name | Common Name | Comment |
|---|---|---|
Carrot | For a general overview of carrot, see the Carrot Facts Page |
Stock:
| Name | Uniquename | Stock Type |
|---|---|---|
70796 | population |
Population Type:
F₄
Population Size:
150
Units:
cM
Number Of Linkage Groups:
6
Number Of Quantitative Trait Loci:
1
Number Of Markers:
302
Type And Number Of Markers:
- SNP: 286
- SSR: 16
File:
| File | Type |
|---|---|
| 16.marker.66-74 | microsoft excel xlsx file |
Software:
JoinMap 4.0
MapViewer Overview: