2016 80592 NG full map

Resource Type: 
Genetic Map
Name: 
2016 80592 NG full map
Description: 

Genetic maps of three populations were used to establish a consensus map suitable for guiding the construction of superscaffolds and pseudomolecules. Each linkage map consisted of a “full” dataset including all the segregating markers mapped in each population and a “bin” data set, consisting of markers representing unique recombination events.

This is the "full" data set map, the "bin" data set map can be found here.

The F2 population Br1091×HM1, consisting of 138 individuals, resulted from an original cross between Brasília, a Brazilian open pollinated variety that led to the discovery of M. javanica resistance, and Homs (a Syrian open pollinated variety, with purple roots). The Br1091×HM1 genetic map included 843 co-dominant markers (367 bins) with known sequence information.

Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Map Type: 
genetic
Organism: 
NameCommon NameComment
Carrot
For a general overview of carrot, see the Carrot Facts Page
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Stock: 
NameUniquenameStock Type
Br1091×HM1
population
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Population Type: 
F₂
Population Size: 
138
Units: 
cM
Number Of Linkage Groups: 
9
Number Of Markers: 
843
Type And Number Of Markers: 
SNP: 843
File: 
FileType
16.marker.66-74microsoft excel xlsx file
Software: 
JoinMap 4.0
MapViewer Overview: 

Click on any linkage group to explore this map further. You will be taken to MapViewer and leave this page.