Complete plastid genome of critically endangered plant Prangos trifida (Apiaceae: Apioideae)

Resource Type:

Publication

Publication Type:

Journal Article

Title:

Complete plastid genome of critically endangered plant Prangos trifida (Apiaceae: Apioideae)

Authors:

Samigullin Tahir H., Logacheva Maria D., Degtjareva Galina V., Terentieva Elena I., and Vallejo-Roman Carmen M.

Series Name:

Conservation Genetics Resources

Volume:

Page Numbers:

847–849

Publication Year:

2018

URL:

https://link.springer.com/article/10.1007/s12686-017-0945-4

DOI:

10.1007/s12686-017-0945-4

References:


Analysis	NCBI accession MG386251; Prangos trifida voucher MW<RUS>:M.D.Logacheva, 16 chloroplast, complete genome.

Citation:

Samigullin Tahir H., Logacheva Maria D., Degtjareva Galina V., Terentieva Elena I., and Vallejo-Roman Carmen M. Complete plastid genome of critically endangered plant Prangos trifida (Apiaceae: Apioideae). Conservation Genetics Resources volume 10, pages 847–849 (2018)

Abstract:

Prangos trifida (Mill.) Herrnst. et Heyn is a rare and critically endangered plant of Crimea. In this study, the complete sequence of the P. trifida chloroplast genome was determined using the NGS method. The complete plastid genome is 153,510 bp in length with a typical architecture containing a large single copy region (LSC: 86,481 bp), a small single copy region (SSC: 17,445 bp), and a pair of inverted repeats (IRa and IRb: 24,792 bp). A total of 113 unique genes were annotated, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The coding capacity of the plastome is 57.81%, and the overall GC content is 37.75%. The phylogeny reconstruction based on the complete genome sequences of 25 Apioideae species strongly supports the placement of P. trifida as a sister to a clade of three species of the Apieae tribe.