Resource Type:
Germplasm Accession
Accession:
PI 295857
Cross Reference:
| GRIN Accession |  |
|---|
Organism:
Name:
Daucus littoralis Israel
Identifier:
PI 295857
Alias:
87-54
Description:
Synonyms:87-54; Received as Daucus broteri Tenore; COLLECTED PRE 02/20/1964 Israel by. DONATED 02/20/1964 Israel by Unknown donor
Geographic Location:
| Latitude | Uncertainty (±) | Longitude | Uncertainty (±) | Altitude (m) | Uncertainty (±) | Description |
|---|---|---|---|---|---|---|
| unavailable | unavailable | unavailable | Israel: Terra rossa alluvial soil, edge of ditch, in flooded field, Beit Alpha. |
Biomaterial:
| Name | Description |
|---|---|
Publication:
- Martínez-Flores et al. Extended studies of interspecific relationships in Daucus (Apiaceae) using DNA sequences from ten nuclear orthologues. Botanical Journal of the Linnean Society. 2019. 191(2):164-87
- Spooner DM, Ruess H, Iorizzo M, Senalik D, Simon P. Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae): Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid.. American journal of botany. 2017 Feb; 104(2):296-312.
- Arbizu CI, Simon PW, Martínez-Flores F, Ruess H, Crespo MB, Spooner DM. Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae). Systematic botany. 2016; 41(2):479-492.
- Arbizu C, Ruess H, Senalik D, Simon PW, Spooner DM. Phylogenomics of the carrot genus (Daucus, Apiaceae).. American journal of botany. 2014 Oct; 101(10):1666-85.
- Spooner D, Rojas P, Bonierbale M, Mueller LA, Srivastav M, Senalik D, Simon P. Molecular phylogeny of Daucus (Apiaceae). Systematic botany. 2013; 38(3):850-857.
- Arbizu C, Reitsma KR, Simon PW, Spooner DM. Morphometrics of Daucus (Apiaceae): a counterpart to a phylogenomic study.. American journal of botany. 2014 Nov; 101(11):2005-16.
- Arbizu CI, Ellison SL, Senalik D, Simon PW, Spooner DM. Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae).. BMC evolutionary biology. 2016 Oct 28; 16(1):234.
Relationship:
| Relationships |
|---|
| The sample, PI 295857.ALB.1992.1, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_03ncai01_SD:DAUCUS.AMES.OBS.2011, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_03ncai01_SD:DAUCUS.AMES.OBS.2010, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_03ncai01_SD:DAUCUS.AMES.OBS.2013, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857:DAUCUS.AMES.COBS.HISTORICAL, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_64ncpo01_SD:NC7.100SEEDWGT.TRANSFER.FROM.NC7IV.TABLE, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_89ncab01_SD:NC7.100SEEDWGT.TRANSFER.FROM.NC7IV.TABLE, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_89ncab02_SD:NC7.100SEEDWGT.TRANSFER.FROM.NC7IV.TABLE, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_65ncai01_SD:NC7.100SEEDWGT.TRANSFER.FROM.NC7IV.TABLE, is sample of accession, Daucus littoralis Israel. |
| The sample, PI_295857_94ncai01_SD:NC7.100SEEDWGT.TRANSFER.FROM.NC7IV.TABLE, is sample of accession, Daucus littoralis Israel. |
Project:
| Name | Description |
|---|---|
TreeBASE study 13876: Molecular phylogeny of Daucus (Apiaceae). There is one tree from this study available in CarrotOmics. Tree Tr60728 corresponds to figure 1 in the publication, however, branch lengths and parsimony bootstrap values were not included in the TreeBASE submission. The tree in figure 2 from the publication was not submitted to TreeBASE and therefore is not present in CarrotOmics. | |
TreeBASE study 15477: A phylogenomic study of Daucus. There are six analyses from this study providing six trees available in CarrotOmics. None of these trees is present in the referenced publication. None of the trees in the referenced publication are in TreeBASE. Note that publication title is different than the TreeBASE study title. | |
TreeBASE Study S17932. Integrated molecular and morphological studies of the Daucus guttatus complex. This study contains one tree, corresponding to figure 1 in the referenced publication "Maximum likelihood phylogenetic reconstruction of the Daucus guttatus complex including species that belong to Clades A and B using 10 nuclear orthologs.". Other trees in the publication (figures 2 and 3) were not submitted to TreeBASE and are not included in CarrotOmics. | |
TreeBASE Study S19872. This study contains 25 trees. One tree (Tr98472) corresponds to figure 2 in the reference publication, the remaining trees are supplementary information. | |
TreeBASE Study S23618. Extended studies of interspecific relationships in Daucus (Apiaceae) using DNA sequences from ten nuclear orthologues. This study contains one tree. | |
Analysis:
| Name | Description |
|---|---|
TreeBASE Tree Tr115096 from study S23618. This tree corresponds to figure 1 in the referenced publication. Strict consensus maximum parsimony tree of 48 trees (tree length 8341) constructed with ten nuclear orthologous gene sequences of allele set B, without Daucus montanus, but with this species drawn in manually based on individual allele results supporting it as an allopolyploid species between D. pusillus and D. glochidiatus. Original tree name "MajRule" | |
TreeBASE Tree Tr60728 from study S13876: Molecular Phylogeny of Daucus. This tree corresponds to figure 1 in the publication, however, branch lengths and parsimony bootstrap values were not included in the TreeBASE submission. | |
TreeBASE Tree Tr71398 from study S15477. Original tree name "Tree1". This tree is not present in the publication | |
TreeBASE Tree Tr71399 from study S15477. Original tree name "Tree2". This tree is not present in the publication | |
TreeBASE Tree Tr71400 from study S15477. Original tree name "Tree3". This tree is not present in the publication | |
TreeBASE Tree Tr71401 from study S15477. Original tree name "Tree4". This tree is not present in the publication | |
TreeBASE Tree Tr71402 from study S15477. Original tree name "Tree5". This tree is not present in the publication | |
TreeBASE Tree Tr71403 from study S15477. Original tree name "Tree6". This tree is not present in the publication | |
TreeBASE Tree Tr89356 from study S17932. This tree corresponds to figure 1 in the referenced publication "Maximum likelihood phylogenetic reconstruction of the daucus guttatus complex including species that belong to clades a and b using 10 nuclear orthologs. | |
TreeBASE Tree Tr98472 from study S19872. This tree corresponds to figure 2 in the referenced publication |
Feature:
| Name | Uniquename | Feature Type |
|---|---|---|
S13876_Daucus_littoralis | S13876_Daucus_littoralis | DNA |
S15477_Daucus_littoralis_295857 | S15477_Daucus_littoralis_295857 | DNA |
S17932_Daucus_littoralis_295857 | S17932_Daucus_littoralis_295857 | DNA |
S19872_Daucus_littoralis_295857 | S19872_Daucus_littoralis_295857 | DNA |
S23618_Daucus_littoralis_295857 | S23618_Daucus_littoralis_295857 | DNA |
Stock Center:
GRIN Accession
Data Year:
1964
Image File:
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