Resource Type:
Genetic Marker
Name:
MK005296 K2740
Identifier:
MK005296_K2740
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005296 K2740, is adjacent to primer, K2740_X. |
| The genetic_marker, MK005296 K2740, is adjacent to primer, K2740_Y. |
| The genetic_marker, MK005296 K2740, is adjacent to primer, K2740_Common. |
| The genetic_marker, MK005296 K2740, is located in gene, DCAR_001909. |
| The genetic_marker, MK005296 K2740, is located in gene, LOC108205339. |
| The marker_locus, K2740, is an instance of genetic_marker, MK005296 K2740. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. HM3 | Chr1 | 46.352 | K2740 | MapViewer |
| 2015 HM3 | Chr1 | 46.352 | K2740 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr1 | 40.008 | K2740 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr1 | 40.008 | K2740 | MapViewer |
| 2015 MB Merged | Chr1 | 40.008 | K2740 | MapViewer |
| 2016 70796 NG full map | Chr1 | 22.756 | K2740 | MapViewer |
| 2016 80592 NG full map | Chr1 | 32.297 | K2740 | MapViewer |
| 2016 Integ NG full map | CH1 | 42.82 | K2740 | MapViewer |
Synonyms:
- MK005296
Sequence Coordinates:
DCARv2_Chr1:22151349..22151397+
View location in JBrowse:
Sequence:
ATCCGGAGAAACGGGTCGGGGCGGAATTTAGACCCGGRCTCATAACGCTT
GATGGGCATGCAGATGATTGG
Sequences:
>MK005296_K2740 ID=MK005296_K2740; Name=MK005296 K2740; organism=Daucus carota; type=genetic_marker
ATCCGGAGAAACGGGTCGGGGCGGAATTTAGACCCGGRCTCATAACGCTT
GATGGGCATGCAGATGATTGG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ATCCGGAGAAACGGGTCGGGGCGGAATTTAGACCCGG
Three Prime Flanking Region:
CTCATAACGCTTGATGGGCATGCAGATGATTGG
SNP:
A/G