Carrot Genome Assembly DCARv3 Sequence Original Naming Scheme

Resource Type:

File

File Type:

FASTA format

Download:


Download File Name	Available at	Size	MD5
DCARv3.definitions.fna.gz	CarrotOmics	111.23MB	fd2ec820ea2f386fa4c1391946b80011

Description:

This file contains the carrot genome assembly sequences with the authors' original naming scheme, and is the version used for the JBrowse instance available here. See the referenced analysis below for more details.

References:

The following records refer to this file:


Biological Sample	SAMN03216637
Genome Assembly	Carrot Genome Assembly DH1 v3.0
Organism	Daucus carota subsp. sativus
Project	Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot

Project:


Name	Description
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot	The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.

Analysis:


Name	Description
Carrot Genome Assembly DH1 v3.0	Pacific Bioscience, Oxford Nanopore, Illumina Paired-End (PE) and Hi-C sequencing data were used to develop an improved genome assembly and annotation of the doubled haploid orange Nantes-type carrot DH1, NCBI BioSample SAMN03216637. The new DH1 v3 assembly spans 440.7 Mb, assembled into nine chromosomes which represent ~93% of the estimated nuclear genome size (473 Mb). This genome is available in the CarrotOmics Blast Search

Organism:


Name	Common Name	Comment
Daucus carota subsp. sativus	Carrot	For a general overview of carrot, see the Carrot Facts Page

Biomaterial:


Name	Description
SAMN03216637	This biosample is also known by its germplasm accession of DH1, please see this record for more details.

License:


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