DCARv3 Repetitive DNA Annotation

Resource Type: 
File
File Type: 
GFF3
Download: 
Download File NameAvailable atSizeMD5
20221006.repeatmasker.gff3.gzCarrotOmics18.36MBec96e9dd05a1b17659ab0911c01c1735
Description: 

De novo identification of carrot repetitive DNA. This is the GFF3 file used for JBrowse. See the linked analysis below for further details.

References: 
The following records refer to this file:
Analysis
Project
Project: 
NameDescription
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot

The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.
Analysis: 
NameDescription
Carrot Genome Assembly DH1 v3.0 Repetitive DNA Annotation

De novo identification of carrot repetitive DNA was carried out with RepeatModeler v.2.0.1. Annotation of the consensus sequences was performed using a curated database of carrot LTR-RTs, Helitrons and MITE, carrot satellite repeats, dicot plant repeats from RepBase (v.23.05) and DANTE. Masking was performed using RepeatMasker.
License: 
NameAttribution 4.0 International (CC BY 4.0)
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