DCARv3 Regulatory Gene Annotation

Resource Type: 
File
File Type: 
GFF3
Download: 
Download File NameAvailable atSizeMD5
29.suptable17.gff3.gzCarrotOmics154.1KB315b70d457d79ecf8d852fbc1548406d
Description: 

PlantTFcat was used to predict the transcription factors and regulatory genes. This is the GFF3 file used for JBrowse. See the linked analysis below for further details.

References: 
The following records refer to this file:
Analysis
Project
Project: 
NameDescription
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot

The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.
Analysis: 
NameDescription
Carrot Genome Assembly DH1 v3.0 Regulatory Gene Annotation

PlantTFcat, a reference plant transcription factor and transcriptional regulator categorization tool, was used to predict the transcription factors and regulatory genes in v3 gene models as well as the DCARv2 genes for comparison purposes. The data from this analysis is presented in supplementary table S17 in the carrot genome publication.
License: 
NameAttribution 4.0 International (CC BY 4.0)
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