Resource Type:
Gene
Organism:
Name:
LOC108215228
Identifier:
LOC108215228
Cross Reference:
| NCBI Gene |  |
|---|
Relationship:
| Relationships |
|---|
| The mRNA, XM_017387633.1, is a part of gene, LOC108215228. |
| The genetic_marker, MK017388 3_3214969, is located in gene, LOC108215228. |
| The genetic_marker, MK003114 K0558, is located in gene, LOC108215228. |
| The mRNA, XM_017387631.1, is a part of gene, LOC108215228. |
| The mRNA, XM_017387630.1, is a part of gene, LOC108215228. |
| The mRNA, XM_017387632.1, is a part of gene, LOC108215228. |
| The mRNA, XM_017387628.1, is a part of gene, LOC108215228. |
| The mRNA, XM_017387629.1, is a part of gene, LOC108215228. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017387629.1 | XM_017387629.1 | mRNA | DCARv2_Chr3:3213346..3231385 |
| XM_017387628.1 | XM_017387628.1 | mRNA | DCARv2_Chr3:3214083..3231385 |
| XM_017387632.1 | XM_017387632.1 | mRNA | DCARv2_Chr3:3214083..3230138 |
| XM_017387630.1 | XM_017387630.1 | mRNA | DCARv2_Chr3:3214083..3230138 |
| XM_017387631.1 | XM_017387631.1 | mRNA | DCARv2_Chr3:3214083..3226315 |
| XM_017387633.1 | XM_017387633.1 | mRNA | DCARv2_Chr3:3214083..3222057 |
Sequence:
GGCCTAATCCCAAACCACCGAAACTTTAAAACGCAGCCTGAAGGGAACGG
AGCGGCATTCACAGACACCTCGAAACCCGTGCTTGAATGCCTGCTGATTT
AAGTTGAATTCGAGCCTTGTTTTCCGGCGAGGGCATCGGAAGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTTAGGGTGTGCATGGTGCG
GTTTGGTGCGGTTCCGAACATTAACCGTTACCAAACCGTTGAATGCGGTT
CGGTTCGGTTAATTATCATTAACCGTAACCACACCAATTAAATCGGTTTT
TCGGTTGCGGTTAACCATTAGTCGGTTGCGGTTTTTTTCGGTTTTTCTAC
TATGATTTGCTACTTTTGTCCATAATGAATTTCTAAACAAAATAGAAAAG
TTTCATGTACATGTACAATGTATACTATGTTCGGTCACTCTTATTTCCAT
ATATGAGGATATAGAAAATATTACATACTTTAATCTAAAATAAAAAACTT
TAATACATAATAAAGACTAAAAAATAAATATTTTGACAAGAAATTAGATG
ATGCTAAGTCAATAAATTACCCAAAATAAACTAATCATGAAATTCAGATA
AAAAGTCTTCAAAAAGTACATAAATAAAAAAAGTTGGGTAATTGAATAAG
TTTCATAATAACATCTAATCAGCAGATTAACACCACAAATATTTCAGCTC
TACTGCAATTATCCTATTCTTCGATCAAGCTCTCCTCCAAGTACTTAGGT
GCCCTTCCCAACTCATCTACAATTTAAACAAAAAATTATAAGCACAATAA
ATCAATAATTATATTAATGTGAAATGTAAATTTTTATTTTTATATTTGAT
ATTCGTGTGTGTTTGTTTATAAAAAGAATTAAAAATCAGANAAGAGGAGT
TGCGTGTAATTAAAGGTACTTTCTTTTCTCCGCTCAACTCAGTTTCTCAC
TAGTGCGTATTGCTTATTTTGCATAATCAACCAATATGAATGACATAGAT
ATTAGCCCTGTTAACTATTTTCTTCAATTGCTAATTACACAATTGCTTAA
TTACGGTATAGTGGGTTGGAACACCATCGATTCGTCAATCAACTCGGTTA
ATTTGTAGGTTTTGTAGCCATACAGGCCTTCGATATCAAGTTATCAACGG
CTAGAAACGCATTACAGTAGTTATTCTGGTAACAGGTAACAGATGCTCCA
CACTCCGAAATTAACAGGAAAACTAATATTGGCATGTACTCCCGGGAACG
GGAACGGGAACGGGCTCTTATCAGAATTTTTCTGTAGAAGTACAAATGAA
AAGCGTAGAATCTTGAGAGTAGATCATGATTAGGGGTGTGCATGGTGCGG
TTTGGTGCGGTTCCGAACATTAACCGTTACCAAACCGTTGAATGCGGTTC
GGTTCGGTTAATCATCATTAACCGTAACCACACCAATTAAAGCGGTTATT
CGGTTGCGATTAACCATTAGTCGGTTGCGGTTTTTTTTTCGGTTTTTCTA
CTATGATTTGTTACTTTTGTCCATAATAAATTTCTAAACAAAATAGAAAA
GTTTCATGTACATGTACAATGTATACTATGTTCGGTCACTCTTATTTCCA
TATATGAGGATATAGAAAATATTACATACTTTAATCTAAAATAAAAAACT
TTAATACATAATAAAGACTAAAAAATAAATATTTTGACAAGAAATTAGAT
GATGCTAAGTCAATAAATTACCCAAAATAAACTAATCATGAAATTCAGAT
AAAAAGTCTTCAAAAAGTACATAAATAAAAAAAGTTGGGTAATTGAATAA
GTTTCATAATAACATCTAATCAGCAGATTAACACCACAAATATTTCAGCT
CTACTGCAATTATCCTATTCTTCGATCAAGCTCTCCTCCAAGTACTTAGG
TGCCCTTCCCAACTCATCTACAATTTAAACAAAAAATTATAAGCACAATA
AATCAATAATTATATTAATGTGAAATGTAAATTTTTATTTTTATATTTGA
TATTCGTGTGTGTTTGTTTATAAAAAGAATTAAAAATCAGAAAAAAATAT
ATTATATAATGAAATTGCATGCAACAACCATTATTTTATATAATTAAAAG
ACTCATTCTATAACATAAATTAATATAAAACTAATAGTAACTAAAAATTT
AAGATACCTTTTTCAATTTCTTCAAGCTGCTTTCTAATCCCATCAAGAGC
AAAAGGTTGTGAAGTCTCCAGATCAATTTGCTTTGAATTCTTTGACCTGA
TCCAATCATGTGTACAAATTAAAGCTTCATCAGTCTTTGGAGTGAGTGAA
CTTCTAAATGGGTCGATCACCCTCCCCCCAGTGCTAAATGCAGACTCTGA
AGCCACTGTAGAAATAGGCATGCCCAACACATTCTTAGCTACCTGAGAGA
GAATTGGAAATTTTACAGAACTCATTTTCCACCACTGCAAAATATTAAAG
TCATCACCTAAATTTCTCTCAATAGCATCTGACATATAAATATCAACTTC
AGATTTGTTAGTCATGCTATCTTCTGACTCCAAGTGCTTTTGAAAATTCG
CTATCAAATCAACATCATCCTCCTCATCTTCCTCGTCATCAATGGACATG
GGTGCAATATTTGAATTTATCACAGAATATTTTTTCGATGTGTTACCACT
TGTCTGGCCCTCCTGAAGTCTAGCATAATCTTTGTAAAATGCATCCAGGG
TGCTCTTCACCTTTTCTTTCATTAGAATCTGCTTCTCTTTTTCATCAGGA
TATATCTGTGAAAAACAATAGTCAATGTACTGCATCTTCCTGCGGGGATC
GAGGAGGACTGCCACATAGAAGAGAAAGTTTATGTTGTCAATATTATCCC
AGTACTTGTCGTATTTTGCTTTCATGCGCTTTGCCATTTCTAAATATCTT
GCATGCTCACTAAAACACATATTTCCAATTTTCACATGCATTTTCACAAG
CTCATCAAAGAACAGGTTTGAGGTAACATACTTGGACCCTGAAATTTTCT
CTGTCACCCTGTAAAATAGCTTCAAAAATTTCAGAAAATTCCGAGCTATC
TCAAAATCATTTTCTGATGGAGGTCCTCCAACTACTTCTTTTCTCTTCTT
CTTCTTCTTAGCTTTGGTCCTTGTGTTTGTTGTGACATCTTCTTCATCTC
CAATAAGAAAGTAATTAAAATAAGATAAGTCATCTTCTTCAAGTCTTTTG
AATGCCTTTTCATACTTTACTGCTGCCTCCAACATCAAGTACGTGGAGTT
CCATCTCGTCTCGACATCAAGAGACACATTTTTATCACATTTTATGCCTT
CCTTTCTAATACATTCCTCAAATTTCTCAGAACGAGATGGAGACGACCTA
ACATATCTTACAGCTTTTCTAACTCGCACAATCGAATCATGTTCTTCTTC
CAGCCCGTCTTTCACAACTAAATTAATTATATGGGCACAACATCTTAAAT
GCATAAAATTGCAATCTAGGATCGCATTCGCCCCCTTATACTTTTTCTTT
AAGAATCTGATTGCACCATCATTAGAAGCTGCATTATCGACCGTCACTGT
GAATATTTTGTCAACACCCCACTTTTCTAAGCATGCATGTACCAACTTTC
CAATTGTTTCCCCCTTATGATTTGCAATTCGACAAAAGTTCAAGATTTTT
TTTACTAGATTCCAATCTTCATCTACCCAATGTGCTGTGAGGCACATATA
GTTTATGTTTTGGACAGAAGTCCAGGTATCAGTAGTTAAGGACACTCTTT
GACCCTTCAATAGTATTTTGAGTGCTTTAGCTTCTTTTACGTAAATACTT
AAACAATCTCTTGCCACTGTCCAACGACTCGGAAGTTTAACTCTTGGATT
TATTTCACACACATATTCAACAAAACCTTCATCATCAACAATACTAAAAG
GTCTATTATCTTTGATACACATCCTAGCAAGTGCCTCTCTACTCCTCTCT
TGACTAAAACTATAAGCCTGTAGTGTACGTTCACATTCATTTCCCGCCTG
ATTCTTAGGTGCAAATGTTGCCTCCAATGTTTTCTGCTTCTTGTTGCTAG
TTTTAGATTTAAAAACAGGAGAAGTCCTACAGTGATTAGTAAGGTGATTA
CCTAAAGCACTCGTCCCATTTCTTCTAACATGACACTTGATTATCTTTTT
ACAGTAAGGACATTTTCCTTCAGTCATGTTCTCTACATAGGTAAAATGAT
CCCAAACAAATGACTTTCTTTTCGAAGTTTCATTTTTAGCATCAGCAGTT
TCGTGTACCTGGGGTGTATCATGTTTTTGGTTGACTTGAGATGTACCATG
CTCCTGTTGTCTCTCTGTTTGAGTCGGAGGAAGTTTTTCTCTAAGAACTC
CAGGTGAAGAAAGTGGATCATTAAACTCCATCTGCAATAAAAAAAATTAG
CAATATAAGTAATCTATGACTATGAGTAAAGAAATAAACTTACAAATGAA
CTTAGATATTTTATAAGAACCTGGTGTTTGAATCTGATTAAGACCAAGAA
AAATAAAGAAGAATTCACCGGAGCATTATATGAATTGAAAGGAGTGAGAA
ATTGAAAAACCAAGAGTCTGTTTTAATATTATTGACTTGCTGTATAGTTA
TTTGTAGAGACTGGAGGAGAGCAAAGCAAAGTTGACGCTTGAGTTTACGT
CTCGGCTAGTGTGCGTACTGCGTAGTCTCTGGAAGAAGCTAGCAGGTTTC
GATAAAAATAAGATACAAAGTATCAATATTACTGAGGTGATTTATTATTA
TTTATTAATATATATATATATATATATATATTTATTTATTTATTTATATA
TTTCGGTTCGGTTAATTTCGGTGCGGTTTTAATATAAAACCGAAAATAAA
ACCGCACCATTATTTTCGGTTATTTTATTTCGGTTTTTTTCGGTTTTATT
TTCGGTTTGGTTTTTTTCGGTATGGTTTTTCGGTTTTTTCGGTTTTTTTT
TTCGGTTTCGGTTTTTTCTGCTCGCCCCTAATCATGATTATTAGCGCCTA
GGCGGTTATTGTGCAGTTGAATTAAATAATCTTAAATATGTATCAGCTAT
CCAATTATAAAAAGAGCCACGTAAGCGGTTTAACTTCATTGAATTCCATT
TATGTATTTATCTCTACAGAGACTTTGTACCTGCCCATTTGGAGTCTAAT
TTACATATCAAAGATCTATAAACAGGAGCAGGCTTTCCTCTGGGGCAGAG
GTAAAGATCCCCATATTTTAAAATGGACCAAATACAAAGTTTAAGTCGTT
GGCTCTCATCTGGTGATCATATCTGTAGTCATTGTTTTTGATTAGCTTTA
GTCACTCAATTACCCTTCTGATATGCAGTATTATAGTACATAAGGCTTTA
TTTTGGTAAGCACAGGACATAGTGTAATATCCGGGGATTTCGCGAATTGT
ATATCGAATATTATATGCAAATGTGCCATTTTATGTGAAATTAGAAAATA
AATAAATATTATATAATATTCCAGTTGGATGAGGTGGTATATGATTTATG
AATTTGAGTCAACGGTCAAGGAACCGAAAAGTGATTATTTATGAGGATTT
AAACGAGAAATGAGTGGGTTATTAATTTCATGGAAAATATATGAGTACAT
GATTTTGTGACCCGTATGTGTTGATACGGTTAAGTGGATAAAGTGAATTT
ATGACCGATAAAGGATATCGGATTTTACGCAAATGACGGAAATAGAAAAG
TGTGAATAAATATATTTTGATACATTAATTAAATGAAAGTATGAGATTTG
ATTGTGGATGTATGACTACGTGCTATATGACTTGTACGGGTTGAAATATG
TGATTGATGTGGCTTTAGATAATTTTAAATATTTTATCATGTGAAAATAT
GAGTATATGAGCTTACATATCTTTGTAAAATATTTGAGATGTGATAAAAT
CATGGAATTTGCTTTATTATCTCTAGAATATTCTTAAAGATATTTTAAGA
ATGATCGTTGAATTTATTTCAGTGATTTACTATTTTAAAATGATTTTATA
ATCATAATTTTGATTATCGAGCATTATCTTGTAAAATTCATATAAAATAA
TCTATGTGCTCAAAAATTATTTTAAAAATATGGGGAGAGAGGTAATTTCA
TATTCTATATTTTAAAAATATAGTTCGAGTTGTTCAGAGCAATTTCATAG
AAGTTTTATAATTTACAAGCTCGTTTTTCAGGAATTTTGCAGTAAAAGGG
TATTGGTTTTAATTGTATGATTACTAAATTGTCCCCGGCTATATCCTCTA
AACCACCAGCCCAGTTCTTTCTTATTCAGTGTCGAGTTCTCTCGAACTCT
CTTCATCTCTCTCGGCTCTTCTCTCTCTCTCTGGTACTCTCTCCCTCCTC
ACTCCCTCTTCCTTTTTCGTGTCCGATTCTCGAATTGAGACCGGATTTTT
GTCTTGAATCACTTCCTAAACTATATAGTTGTGGGTATTGCTTGGTTTAT
TAGAACCCACTTCGGGTTTAGTTCGATTTTTGTGTTCTTGAATTTGATTC
ATGGAAAAATCTTGATAAGATGATAACTTTGTATGCATATTGGATTTTGT
AAATTTTTAAAACAGATTTATGAGTTGGGCTTGATTAATATTGATTTGTT
TTGATGATTGGGTTTAAGATTATGCATACAAGTATGATGGTATGCTTTTA
GAATGGTACTTTGAGAGTGTAAGTAGCGGATTAATGATTTAGAACGTTAT
AAATTTGTAGACTGCTGCTGGGCTGTTTTTGTAGCATAATTTTGGGTTAA
TTGAATCGACTTTTGTGCCTAATATTTCTGTGATAAGGTGTTCCTTGATG
TCTATATCAAGTACGAAAAAGAATTTCGATGTTTCATTATATGAGCTAAA
AGATATAGCCATTTAAGTGACATATGTGCGAAATTTTGTTGTGCTGTTGT
GATGCATCTGTTGGAGTCATTTTCTGGATAAATTATGATATGCATGAGCA
GTAGTTTCTGGTCATATTATATGATAATTGGAGTCTAGTTTACTCTCCAA
AAAGAATCATTGCATTTAGATTAATGAGTTGGGAGTTATGATTATTTTAG
TGAGGTATGTGCAATAAGCAAAACTGCTCCGATTTTTGATTTTATAAATT
ATAGTTAAATTACTTTGACTTTGATTTTTAAGCCAAAACAAACTTTGTAG
CTACTTGGGGAGTTCAGGAAAGTCTCCTCAAAATTTCAAGTGAAAATCAT
ATATTTCTGATTTATTAAAAATGTTTGAATGTCGGTAGCGCAACTTTGTG
AAAATTCTGTTTTAAGGTCACAAAGAGAGTTTTCTTCACAAATTCAAATA
TATGAGTTGAGTTGTGATTTATTAGAGTATAAATGTGTATTACTGGTTAT
TGGTCAGTAGTTGTTAATTTGTTTGATTTAAAATTTGATTGGTTGGTTGT
TGGTATTGTGCAGTTGGATTAAATAATCTTAAATATGTATCAGCTATCGA
ATTATAAAAAAGGCCACGTAAGCGGTTTAACTTCATTGAATTCCATTTAT
GTATTTATCTCCACAGAGACTTTGTACCTGCCCATTTGGATTCTAATTTA
CATATCAAAGATCTATAAACAGGAGCAGGCTTTCCTCTGGGTCAGAGGTA
AAGATCCCCATATTTGAAAATGGACCAAATACAAAGTTTAAGTCGTTGGC
TCTCATCTGGTGATCATATCTGTAATCACTGTTTTTGATTAGCTTTAGTC
ACTCAATTACCCTTCTGATATGCAGTATTATAGTACATAAGGCTTTATTT
TGGTAAGCACAGGACATAGGGGAAAAAAGAGCCCAAAAAACAGTGGTAGA
ATTACCTTAATGTCCCCATAAAACATAGAATAGCGGAAGTACCACCCTCT
ACAATTTCATCTCCATTTTATCACACAACACTGATAAATATTCCATTAAC
CGGCCTCGTAATTAACCCACTTTCCGGCAGGTAATTCCCCAACTCCTCGT
TTCATCTACTCTGTGGTTTAGATTTTTCACTTATGGTTGCGCATTAACTG
TTTGATGCAAGTCCCAAAGAATATATAGTTTTTTTTAATGTGATTATTAA
ATGCTTAAATTGTCTTTAAAAAGATTCGAACCCTCGACATTTCGTTTCAT
AAAAGGAGCGAGAGAGTTACCATTAGACCGAGAGGGCATTGGTTTATTTT
TTGGTGCTTTGTTGTATGGTAACATGCTATTTCCAGAACTTCCTGCAAAT
AGAATCAGTTTTTTTTATTGTAGTCATTGTTTTGTTTACTGACCCATTGC
AGCAAGAATGGCGGCGTTGCGCTTTCAAGCTGCTTCACTAGTGGCTTCAC
CTTGTTATCCGAATGCTGTTGCTTGGTCTGAAGAGAACTTGGTTGCAGTT
GCTTGCGGGCATGTTGTGACTATTTTGGTAATGCTGGACTCACTCGCATT
ACGATTATGAGTTTATAAGGTTATTATGTGGTTGCTTGTTTATGTTTTTT
TGGGTTTCTTTTGATACTCGTCATTTGTTGGTTTTACTTGTATATATTAG
ACTCCAAACATGCCTTTTGGACCTCGAGGCCTTATTACAGTACCACCAAG
CCAACCTTTTCAAATTGGAGTAATAGACAAGGAAGGTATTTGTTCATTAT
GGCAACGTACTCATTAGGACAGAATCTCTACCAATGGAATAACCACTGGT
ATATTAGGAGAGTTGTTGGGATCTCTTGGTTGATGAGTTATGTTTAAGAT
CATGTAACCTGATTTATTGTTTGGTTTGCCTTGATTAGCTTCTTTTTTTT
TTCCGTTTGCTTAGATTTGCTCAGTGGTTGCATGCAACCCATTAGTTTTC
ATAGAGATACCAGTCCTTGTGTTCGGTCTATCTCCTGGTCTCCCACTGGA
TTAGCGCCAAACTCAGGGTAAATTTTATCCAGCTTACCTTGTTTTGGTTT
ACATTTTGTTAGGTGTTGTAATGTGATTATATTTGAAAATGTAAGTTGCG
TGTGTGTTACTTGGTGCAGATGCTTGCTTGCTGTTTGTACCACTGAAGGA
CGAGTGAAGCTTTACCGTTTTCCTTTCTATGACTTCTCCGCCGAGTGGGT
TGAGGTATGTCCTCGTTTAGCTCTGAGTGGAAGCGTAGTAGAGTCTTAAT
ATCTTAATATCTGTAGTTGACCTTTACCAAAAGTAAATAATCTTGAATGA
TTTAATTTGTACTCGAGTCACAAGGACATCGATTTCTTAAAACATTTATA
GATAATATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGAT
AATATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCT
CTCATTACACACACACACACACACACACATATGATTGTACCAGTAATCGT
CTTGTAATGAAGTTTCAGTTTGTCATCATAACATAGATCTTGGATATTTC
TGAGAAGCTGTACAAGTATTTACTGGATGTCAATTTCTGGGAGTCGGATG
TTTACTCGGAGCTTTTTAATGTAAGTCAAGTAATTGAATAGTTCTAGTAG
ACCTGTTCTAGCAGTTTAACATAACCTGATAACTTTTCTTTATGTAACAT
GGACTCTGTACCTTGTTGTGAAGTAAGTTCACGTGTGCATGTATCAAACA
TATGATTTGTAGATAACTAAGCACACTTGAAAAGCACTTGTCAAATGTTT
TTTGAAGTAGAAATGTAAATAGCGCATGAAGCGTTGTATGATTTATTATT
TCTTTACTGTTTTATTGGTTCTGGTTATCCTTCATCTGTTATATTCTCTG
TATCAGAACCCCCAAAAATAAAATATCTTTTTCTGTTTTAGGAGAGAGCA
AGTGAACTCGGGAAAGATCATGATGTTGATACTTCGACCCCTGTGATGAG
AAAAAACCCTAAACGAAAAAGGCGTAATGACATAGCAGTGAGGTACAGTG
CTCGACTATGCCATATTTACTAGTATTGCACAGATTGTTTGATTTAATCA
AGATAATAAACTCTAAACTCATAAGTTTATTCTGTTCTTCTGTGCTTGAT
GGTAGTGATTCTGCAAATGATATTACTGAAGTCTCAAGTTTTCCATGCTC
GCTTGCAATTGAAGGTTCATCTATAGAGGTTGGTGTCTTTTAGTATATGA
AGTTACAATGTTGTAACATGATATCATATATAGTCATTGCACTCTTCATT
GTTGGGTTCATGGTAATTATAACACACACACACACACACACACACACACA
CACACACACATACATACACACATACATACATAGATATAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATAACACT
ATTAACTCAGTTAAACTTCACAGTTAGTAGTCATAGTTGTCTCTAAATCC
TTTTGCTTGTTTTCCAGGCTCTTAAAGCCCCTGATGACAAGCTGAAAAGT
AGGTCTCTTCAAATTGTTTGCATGCCTAAATCTAAAACAAAGAGTAAGAA
AAGAGTGCCAGAAACGCATAACGTCGCCTTAATATCAGCTGATAAATATG
CTTCACGCAGCTCAATGCTAGCTTCAGTTGTTGTTTCCTGGTCACCACTT
TTACAAACATCCGAGTATAGATTATCGTCACCAGATGATTCGTGTGACTG
TTGTTCGATACTTGCAATTGGAGGAAAATCGGGCATGATTTCGTTCTGGA
AAATCAATAAACCACAACACTATTCTATTATAAACAACACATATACCAAT
GATGTACAGCTCGTTGGAATTCTCCATGCACATATGTCTTGGGTCACTAC
AATGAATTGGGCAGTGTCTGTTTCTGATGCTTCTAATCATCAGCTTCTCT
TAGCTACAGGAAGTTCGGATGGGAGGTGAGTAGTTTGATGCTTACACATA
GACTTAATTTTTGTACCCCTTTGTATCTAGAGCTTTGACATAATAGTGCC
TTGTACACCACCTAGTGCTATGAAACACACAAAATTGAAAAAACCGCAAG
AGATTCTTAGCACGGGGTATAAAGGATAGGTGCTCCAATTGTGAAGCGCG
ATTACTCACACGTTTTTTTTCCCAAAATTGAAATAATCTATATTTGTACT
TATATGATATTGAGAATGTTTGTTCTAATGGTAAACAATAAAATAGTACT
TAAAATAGTTTCAAACATAAATTACAGTCTCAAACATGTGGGAATATTAT
ATAGCAGTATTAAACTATCAATCTATAATATTTAGTAAGTCAAAGGCTTC
TAAATTGTTTAGCTCAATTTCATTCTTTTAAATTCTTTCTCTTCTTTGTA
ATGGGTACTTAGTAAAGATAAGTAAGTTATTTTTAACTTGGGGGTATTTC
AGTTTTTGTGTTTCTTAGTGCGATTTTTGGCGAGTAATACTCGAGCCAAG
CATGATTTTATGCCAAGTTTATAATCACACTAATACGCAGCTCGTAAAGC
GTGATTAATCACGCCATTTCTCACGACTTAAACAACACATGTTATCTACT
ACAGTTGTCTGTTCAATTGCAACTTGGATGTGATTACACTGAAAATGGAC
AGAATGAGGTTTTACTTTATACTTATTGTTATTTATTGTGAGTAGATTTT
TAAAATATTTTTTGGCATGTATTTGTTCTACCTTAATTATAACTAAATAA
AAAGTGGCTAAACTCTAAAGTAACTGTTATACAAAATGTTGCTAAAAGTA
GCTTCAGTCAACTTATTTTGAATGATAATTCAATAGGTAACAGAAGATAC
TAAATATTCTCTTGCTATTGATCTGATTATTGATATAGATGTATGCATCT
AAATCAAAACAGTAATAACCCATTGCTTTGTCTATAATGCTAGAGAAGTT
GCCGAACTCCGAAGATCATCTAAAAATTCCAGTTTTAAGGTTACACGTAT
ATGCAAATCTTCTTGTGCTCAAACTTATGGTATTTATAGTTGTATGTAAA
ATTAATGACAAGATATCTCATATCTTCAAACTTTCAAGGTATATTAAATT
TTATTAGACGCTGCAACTTCTACGAATATCAAATAGGCAATACAAGCAAC
ATATACTTATATTTTGCTTTGTGTTGTTTTGGTTTTTTGTTATTGTATTT
GTCTGTTACTAGAGGGGGACAACATGCAGTTGATTTGATCACTTGAATAT
AGAAATATTTGATTCAAAAAAGTTTGCTACTAATATTACTCTTTCATTTA
CAGTGTCAAGATTTGGCACTGTTATAGTGCGGAATTGCTGAAGCCATCCA
AAACTAGTTCTGCCTCCTTCTCCCTATTTCACGAGGTCACCCTTTTGAAC
TCTTAGTTTTTTACTCCAAGCTTTTGAATGAATATATATTTATGTTGATG
TGGATCAGTCTATCTCTATGCAGCTCATATCCGTGGATTCTGTTCCAGTT
TCTACACTTTCTCTTACTGTGCCCATAGCCTCTGCGGAAAAAATTCTTCT
AGCGGTTGGCAAAGGTTCTGGAGCTTTAGAAGTGTGGAAATGTGACATAT
CTACCAGAAAATTTCATAAAGTTGGTTCTGATGATTTACATGGGCATGTT
GTAAGTTTCCTTCTATTCCTATCAAATATGATTATAAGTAAAAATATATG
TAAATATATTATCATGATAAATTTTAAGTTTTCTATTTCCAATTACTTTT
CAGGTAACAGGAATCGCATGGGCATTCGATGGAAACTGTTTGTACAGCTG
CAACCAGGTATTTAGGCTCATTGTGCTCGTATGTGGCTAACGGCCAGCTT
ATGCAATTTGTGATGGTCATGTTTCTCTTATATGTATCCTGTTCACGATT
TTCTCTTCTAACCTTTTTCCTATTCTTGTGTCTTTTCCGTATTTTTGACC
CAAAGCAATTTTGAGGTTTCTAAGATTCTGTTTTCTTAGGTACATGGTAC
CCCCCCATAATGTTTGCACTTATCAATTCGTGGATTTAGTTATAATGTAG
TATGTTTAATAGTAGAACTGTGTCGGACTTGACTCATTAATGCTTTCCAG
TACTGACCATATAGCCCCCCCTCCCCCCACCCAGTTTGATGGCCAAGTAA
CTGGAATATTTTCTTCCTGATGATAAAAGTATGTACTCCTAACTACTAAA
TGTGTTATTTAAGGATGATTCTTTTCACTGCTGGACTCTAAATGGAGATT
CCTTATGCAAAGTAACTTTACCTTCAAATACTCCTGGTGTGGAGAGCTCT
ACTGATGTATGATGTGATCCTCTACAGTTCTTAACACTCCAGATACACAT
ATTATTCAGCATCTAAAGTTTTCCAGGGATCCTTTGCAGGTCCCAAATGC
ATTCGATTCATGTTTTGGTCTAGCATTATCCCCTGGAAATCTGGTAGTTG
CTGTGGTACGTAATGTTGTCCCTGTTTTGTTTCATGTATTGCTATCAGTA
AGCACATTAACAGTATATATTTAACATATTAATATACTACATTTAACATA
TTAATATACTATATTTAACATATTAATATATTTAACATTATTCCCTGGAA
ATCTGGTAGTTGCTGTGGTACGTAATGTTATCCCTGCCTAGTATGTATTG
CAAACAGGAAGTCATGCTAGTTATCAAGATTATAATTAGGAACTGATTTT
TCTGCTGCTATGTATGCTTGTATAGTATTTAGTATATATATAAGCCTTGG
TACATCCCTAGTTTTTACACGAATGTGCACATAACATTAACATTTAAGAA
CATGCAAGATAGTCCTTAAACTATTTAAACCTTAAGTGTTGCTGTTGAGG
TGTGTTCAATTGTGTATTGCGACACCAATAGGGTTCCAAGTTCCAACTGT
TCACAAAATTTAACGCAGTGTACAGTCTAAAACTCCTTGAGTAGGGGTTG
CATCCGCCCACATCTTGCATGTCTCAGCAATAAAGCCTCGACTGTCCAGC
AGACTAGCAGAGATGGAATCCAACTATGTATCGTAATTGTGTTATTTATC
GTAGGTCTGTAACTTAAAAGAATAGCAATGGATTTAGGGACAAATTTTCA
AGAAAGTATATCTTTAATGTGCAAAGTTTGTTTGTTTTTGAGGAACAAGG
AGTTACAGTGTGAAGTTTTTTGCACACGGAGGTGTAAATCATCGACTTAA
GTAGAGACGCCGCGTCTCTACTGCTTGAACTTTTGCTTTTTGAGGGAAAA
CAGTAGAAGTTCTTTGTAAATTTGACTCGCACTATAGGTTGATTATTGCT
ACCATTATCGGTTGGAAATTAACAAGTTTATTGTCGATTACAGGCTCGTC
GTTTTGATGCAGGTCTATTAGATCCAATGTACCAGTTAAGGTAAAGATTT
TCATCTATTCAATATAACTCACAAAAAGTTTACATAGTTTCGACTTGCTC
GCACATTTGCTACTATATTCTGTATATCTGCATATACAATATAGAATACA
TGCATGCATTGTCACTTGGTCAAAAATGATACATTAGGACAACTATTTAA
CGTCATATAAATATGTCACACATAAAAGTAGTCCAAGGAGATATAGCTGA
AATAGATTAGTTGAAGGCGGAAAGGCTTTTCTGGACATGTAGAGCTCAAA
TTTATAATAGTAAAATTGTTGACAGGGCCTCTTTGCAGCTCTCTCTAAAA
GATATTTGTGATCATTGTCAGGTCTCAGAAAGCAGCTGTCGAGTTCTTTT
GGACCGGTGGTCAACAACTTGATAAGTTACTAAAAAAATGTTCAGACTTC
GACGGTGAAGCTTTTTCTGGGTTTTCTACGAGAGAATTGATAAATTGGGA
TTTTAACATAATGTGCTCCCTCAGTCAACATGAACATTTGAACAAGCCTG
TGGTTATTTGGGATGTGGTGGCAGCATTGTTGGCATTCAAGCAATTTGCT
CCTATATATGTAGATCACATACTAGCCAAGTGGCTAAGGTCTTATGTGGG
ATCCAACTTGGAAAATGCTCCTCTTCAAAAAGTCGTCTCTAAATACCTCT
CTAATATTACCACCCGTCGGCTGCACTTTTTGAACATCATCATTAGGCGT
GTAATACTTGCAGATATGAAGGCAGATAAAGTCAATGAAGAAAATCAGAG
CTTTGTAGCTGAACCTGGAAAGGGACAAATGGGTTTGTGGTTGAAGCTTC
TAAAGAGCAGTGAAAAAGAACTCCGGGAAAGGCTCATTTATTGCAGTTTC
TCCATCGTTATTAACTTAGTGTCTCAATCATCAGAAAATGTTAGTAAACT
TGGATACTGGCAGCCTGCTGGATTGGCACAAATGGAGAACTGGGTTAATT
CTCAACAGGCCCATATCAGGAATTCCCTTAAAGTACTTAAATCGGAATTT
AAGAAGATTAAAAAGAGGTACTCAAATATTTTAGATATGCTTCTTAACTG
TTCCTTTACCCTGGTCCCTTGAAGGTATATGTGCAATACCTCGTGGCAAA
CTTTATTAATATGCAGTATGTATTCATTTTGGATTCTCTTAATTTGTTGC
CAATTGGTAATAGGGTTTGTTTGTTCAGGGTATTGCATAATCTTATGTGC
ACTTTCTATGAAAAAATAGTATCGGGGGTCATTGAATTCCATCTTGCGAG
TCATACAGCAAGATTATGGGAAGTGTAGACACTAAGTCACTAACATAGCC
CTAGTAGATTAAATAATGGTGATAGGTCTTTTCTGTGTTGTGCAGACCCT
ACTTGGTCTTGTTTGTGCAAGATCATAAATTTAATTTTGTTCTTCTTGTG
TAAATTAGAATGTTTATGGAAGATATCACATTCTTTTTTAACAGCTTAAT
AATTTGTGAGAATAATTACAGTGTGACACTGACATTTGTGCACTTGTTTG
TGGTAAATGGCAACTTGAATTTTCCTCAATTCATGCTCAAGTGGGTTGTG
AACTGGGATTTGTGCATTTGTTTAAGCGTTTGACTGGGCCTTGCTGCTTA
TATTAAATTATAACAATGATGTAAATGTTTGTGGTTTTGCATGGCTAGTA
ATATGAAATTTTCTTTTGACAGCAAGCTTTGCTCAGTCGGTAAATATACA
GCGAAGGAGCAATGCAGCTACTGTTCAGCACCTGTTCCATTTGAATCTGC
AGAAGCTTCTTTCTGTCAAGGTACAGAATGCGAGAATGGAGTTGTACAGA
AACACAAACTGACACGCTGTGCTGCCTCTATGATCGTTAATGATATCACT
CCAACATGGTTTTGTGTGTGCTGTAACAGACGGTCTTCAAAATTTGCACC
AAGGGCACTATTTTCAATGCTCCAATATCCTAGTGACCTTAGTAAAGACC
CAAAAATTACAACCCTCCGACCATCATCGACACCCATGTGTGTATTTTGT
GGTATACTACTACAGAGATTACAACCGGAATTTCTTCTAGCAGCTTCACC
TGTATAAACTATAAACATGTTAGAACGGTATTTATTTTTGTTGTATATTA
ATACAAGTTAATATATATAGTATATGGTAAGTAGGTTCTGAAGTTCCAGA
GTTGAGCATTCTTTCATTCTTTGCCTTCACCAATGTGTTTGCTGGAAGTC
AACTAATGTAAGGTCATGGTACCCACAGGTTAGTGTTTTTTTTTTTTTGC
TAATATTTCTGAAAACAACCCACATTGCACAACATATATATCATAAATGT
ATGTATAATATATTTATGGTGTTCTGCAGGCATCCAAGGACAAGGTACAG
CCAGAAGAATTAATACTTGTGGTCACACATTATTCAAGTGTCCCGGAGGA
AGATGTAAACATTAAATCTCAAGATATTCATCTTTTTATCATCTGCTCCC
ATGTTAGATGAATAAAATGAAACTGACTTTTTTTGGTTTGATTGAAATAC
GTATTGTTACTGTGTTCGTATATCCGAAGTCTGTACCGTTTGCTTTTAAT
TCGATACATGCTTAAACAGCTACCACACAAGTTTAATTGTTGTGCTTGGA
TGGTGCACGACACCTTTACTAGAATGTTTGTGTGGAAATGTCAAATACCT
GTCACTCACTTAAATTATGAAACTTCATCTCTGCTTTATCAGTCGATTGT
TATGTTGATGTGTACAAATATCAGATTTATATTGTACTGTAATGTCAAAA
GAAAGTATTATAGAAGATGATATAGGTAAAGATTTTACATATGTGAAGGC
TTGCTTTTTAATTTTGGTGATTTGTGTATATAATGACCTGTAATTTGTAC
GGTTGTAAGTTGTAACCGGTGATTTGCAATATTGGCTTGGGACCGATGAT
TTGATGATTTGTACCACCGAAACTCGTGATTTGTATTTTTGACTTTACAG
TTTTCGGTCTGGGTCCTTGCCATATGTATGATGTATCATACTATCAACAG
TTTTTTTTCCTTGCTGGATGACATTAATCTTTAGCGGAAAAATTATCCAT
TCTAGGATTTTTACCATCCATCGATTTTTTTCATGCTGAATTTATGCTGC
TTATAATGGATTGGCGTGTCATTACCGATATAACAATATAAATATATTGT
CTACTTTGCATTTTCTTGACAAATTGTGAATTGTGTGCAGTATGTGTCCA
ATGGATTGGGGACCTATACAGCCATTGCTGCAGGGGATGAAGGTAATGAA
AGAATTGTTGTTACCAAAAAGCTGAACAATTATTGAGCATTTTGTAGTAC
TCAATAGAATAGAATCTGTGTACGTATGAAGCAACAATACTTGTCTAGTA
AAGGGAGAAGCAACATTATTATGATCTAGGGTCACAAGAAGATTGACCCA
CTTGGGATGAATTAAAAACTTGCCACAGTTCTCCATCAA
Sequence Length:
18039
Sequence Checksum:
c44a506ae60560ea5729bf57ad566ced
View location in JBrowse:
Gene:
LOC108215228
Gene Biotype:
protein_coding
Gbkey:
Gene