DCAR_011676 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_011676

Identifier:

DCAR_011676.gene

Locus Tag:

DCAR_011676

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 7 relationships.
Relationships
The mRNA, DCAR_011676, is a part of gene, DCAR_011676.
The genetic_marker, MK017681 3_39034203, is located in gene, DCAR_011676.
The genetic_marker, MK008682 85036.51580, is located in gene, DCAR_011676.
The genetic_marker, MK017680 3_39036058, is located in gene, DCAR_011676.
The genetic_marker, MK009528 3_39036067, is located in gene, DCAR_011676.
The genetic_marker, MK009529 3_39036087, is located in gene, DCAR_011676.
The genetic_marker, MK017674 3_39042083, is located in gene, DCAR_011676.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_011676	DCAR_011676.mRNA	mRNA	DCARv2_Chr3:39032833..39043202

Sequence:

ATGGACATAATTGGAGGAAAAAAAGGGATGGAAAGACAATTAAGGAAGCT
CATGAAAGACTCAAGGTTGGTATTAAGAATTGTCCTGTTTGGATATGAGG
ATTAGTGGAATATTTTTTAATAAGTACTTTACCAACTCGTTCCTCCTGCT
TCCTATGCTAATAAATTTGCAAAAACTAGTAGGATTGTTTAAAATACTCT
ACATACTATGGGATCCCCCGCCCCCTCTTCTTTTAGTTTCCGCATTCTCC
CTTCACTGCTTAGAAAGGAAAGAAACATATGTTAATAAGTTGCAATGGCT
GTAAAAGTAAGCATTTCAAGAATGCATAAACACTTGCAATTGACTTGATC
AGTTTATTTTCTGTTATTATCATTTTCTGCTAAACAGTTTTTGTTCATGC
ATCAATCTTAAGTATGTAGATTTAACATTTTTTCAGGCTGGAAGTGTTGA
TGTTTTGCATTGTTACTATGCTCATGGAGAAAATAATGAAAATTTTCAAA
GGCGCAGCTACTGGTTGCTTGAAGAGTGAGTATCTAAAATATATGTTACT
TCAGATCATTTTCTAAATTATAGTACTCTCTCCATGCACACAGACTTGTG
GACATAAATATACGCAATATAACAATGGAAATTGCCCAGGGGGAAGGGGT
GGCGGGAGGATTGCTCAGACATTGATTCGACTTTTAAATCTGTTATTTTG
TGCATTACTTGCATAGACAATGATATATACAATGATTGATGACTTTGGAG
AACTACAGGTTAAGGTTGCAGAATTATAACATCAAATGCTTTTGAGATTC
ATGTTCTAAGAACACCAATGCATCTTAAACACTGCAGGGTGTACTTTTGA
GTTGATATATATAAGTCTTTGACAAATGAGGCTAAATCCGTATTCTCCTG
TGATGATTTGTGAGACATTTTCTGATTTCATCAGCTCAAGCTTGCACTTG
AGCTTCACAAGTTGAGTCGAGTTTGAGCTGTTTCATTTATTTCAAAATTA
TTACTATGCTATATAGATCAGGCACAAACCAGACTAATTTATGAGTCTAA
ATTCTATAAGCAGGTGCTGGCGGAGTTATGTGATGAAAGTAAAAAAATTA
GAAAGGAGGTAGGTTCATTGAGGTCGAGCTTGAACAACATATAAGTCGGA
GAGTATCTGAACTCGGCTGCCTGCTTCGAAACTCTATGACACACTGAACT
TAGCAGCCTTAAAGGCCAAAACTTTATTTGTTATGATAATTAATAATAAT
TATAGTGGAAAAAGTAAAAAAAAAAACTTTAAAGGCTCGAGTTTGAATTA
ATGTGTGTGGTTAGTAAATATATGAAACACTTTACGTCCTTCAGATATTG
ATGCATGAATTTTTTAGCTACTTGATAACTAAAGCCCTTAGAAGTGCACT
AAGTTTTTGTGCATGCCGTATATTTTCTGAAGCATTTTACAATTTCTGAC
TTTCCTGTATTCTTATTAACTGCCTCAGGGAGCTCTCCAACATAGTTCTT
GTCCACTACCGGGAAGTAAAGGTTAGTATTTATCCTTTCAGTCTCTACTC
TCTAGTCATTTTTCCTTTTACAATTTAATTAAGAACAACCTTCAGTTAAA
TTTAGATGTCACAAAAATGGTTGTCACTGCACTCGACTAGTCAACATCGA
GCAGTCGAGATCTCCTAAATGACTAATTTAGTCAACTTGCTATTTCGAGG
AATTTGGCCGACTTGTCGACGTAGTGACTAGTCGGATTTCCTTGCTGTTT
TGGACCATTGACTGGTGCGTCGAACAAAACACAATATAAATCCTATCGTT
TTTTGTTTGAATTGCTTAATCTCTTAGCGTAGAAACCTTATTGTTGAAAG
GGATGACTAAATCTGTTGTGGCTTGTCAAGCCTCGTCGTCTTTTCAATCT
CTGTTCAATGCCGATTTACCTTGAGTTCTATTTCTTCAGAAAAATGTGAA
AACATATAAATAAACAAAAAATGTCAGTTTGTGTGTATTTTACCTTTAGT
TTTTATGTACTCCTGCAATGTGTTTACATATGCATATATACTCCGTGCGG
GTGCGTGTGTGTGTGGCAGTGCGGGTATGCTTGTATTAACATGTACATTC
ATATTGTTTTATATGCATGTTACTCCAATTTGTAAGTGTCTCAATATTAT
GTTGACCATTGACTAATTACTGTGGTAGTCATGATTTCTCTTCCTTGTTT
ATTTTATCAAGACTAGATTTACTTGCTTCTTAGTATAATACTATATATAT
ACATATTGTACAATGTATAAATTATTATTAATATTTATAATAGTATATAT
ATACATATTGTACAATGTATAAATTATTATTAATATTTATAATAGTATAT
ATATACATATTGTACAATGTATAAATTATTATTAATATTTATAATAGTAT
ATATATACATATTGTACAATGTATAAATTATTATTAATATTTATATATTG
ACTATCTGAAGACTAGAATACGACTTACCGGCTAGTCGACTAGCTGAGCC
ACACCTCCATCTACTCGACTCCACTTACCACCTAGACAATCCCCGTCACA
AATAATCTGAACTCGTTGATTTATTGCATACCTGGGTTAATTTTTGTAAA
GATTCAAGATAACCTATTGGTTTACCTGTATGTCGTTTGGGCAAAAAGTG
TAGTATAACATATATTACTTCATTAAATGATTGATTAGATTCAGCTCAGT
GATATATTATATAAATATCATCTTTCAGTATTATAATATCAAGTGATATT
CTTATTGTAAACACCTTAAATTCGATATGGAATTATTGGTGATACACACA
CACACACACACATATATATATAGAGAGAGTCTTATTGTACTACAGATCTC
CTTATTCTACAAACTAAAAACCCAGCTGCAATATCACTAAAATCTAAACA
CAAAATCACCAAATCTTTCAACAACCCCGTTTCCACCTCCATCTCAAGCT
CCACCTCCACTTCTGGCAACTTCGGTCCGCCGCCCCCTCCGCCTTCTGCA
CGTCCGGCGTCCCTCCAATGCGCCTCCTCCACGTCTGTTGTCCCTCCAGT
CCGCCTCCACCGTCTATACCACCAACGTCTACCCCACCTCCACCATCCCC
TCCACCTTCTCCTCCTTCACCACTCCATGTGCGTCACCTCCTCCACCTTC
GTCGTCTTTATCTCCGCCATCTCCGCTGCTTTACTGCCAATATAAAGGCA
TTGCTCGATTTTGTTTATATATCAGATCTGCCGAACACTCCTGCCGAAAC
TGTTGCTCCATTACCTCCTTCGATGTCCACCGCCTTCATCTCCACCACCG
CCACCACCACAAGAATCGAGTACAAGAACAGATTCACCGATTTTCACCAA
TTCCCGGAAATTTTCACCAATTTTGCAACACTAATCACTAAATTCTAAAG
AGAATATCACTAAATCGTATTGAGAATATCACTAAATTAAACTAAGCTGG
TTTTTAGTATTTATTTAATGGTTGGTTTGTATATGATACTAGCCTATATA
TATAAATATATGTATATATATATATATATAATATGTGTGTATATATATAA
TATTTATATATATATTCATACATACATACTACACACACATATAGAGTGTT
ACTCTTATATATGTGTGTGTGTGTGTGTGTGTCTAGCAGGAAACAGGATT
AAAATGATAAGGTTCAAAGTACAGAGTGACTATATCCAGTATTGATCCAT
TTAGGATGGATCAATCAGTCTACCATCAAACCTTGTTGATAAATATACAA
GCATATTAGATTTTTCATACTTAATAAAGCTGGAACAAGTCGGGTCACAC
AAATGATAATATAGTAACGGGTATTATATCAAAGTGCCCACCATTTTTAT
CAAAAACTACAAGTGACTAACCGATCTCGACAGAGACTCATTTAAGTCAC
TATGATCACTATATATATCACTCCGCTAAATCTTGAAAACATATAAATGA
AAAAGTTAACAAACAAATGACGTGTTTGCTACAACCTTTTTATATTTCTT
TGTGATCTTTGGTTCTAGTTCTTTTTTGTAATCCATGTGACTCACACATC
ATCTGTTGATTTGTGTAAAGGAACCAGTTACTCTAAAACCTCAAGGTCTT
AGAGAATGGCCCTTTTCAGGATCTTATATTCTAACATTCCCCCTCACTCG
AGAGCCCATTTATGGGTCGAAGAGTGGATCACGGACGCTCATCTAACATT
CCCCCTCACTCGAGAGCCCATTTATGGGTCGAAGAGTGGATCACGGACGC
TCATCTAACATTCCCCCTTTATGGGTCGAAGAGTGGATCAGGGACGCTCA
TCTTTGGAGCATTAATTTGCCATTCGTGCCACTATAAATTGTGAGAATAT
TGGGGGTGGCAGGGATCGAACCTGAGTCCTCTGCCAACCTGGCTCTGATA
CCATGTAAAGGAACCAGTTACTCTAAAACCTCAAGGTGTTAGAGGATGGC
CCTTTTCAGGATCTTATATTCTAACAATTTGGATTTTATTAAGTTTTCTA
TTAATTATTTTTCAAGATTTAACATAGTGATATATATAGTGATTCCATTG
GCTAAAATGAGTCCCCCGGGTAGTCACTTGATAGTTTTTGGTGAGAATTG
TGGGCACTTTGATATAAAACTCATATAGTAACTAAAAGTATCTTAAACAT
TTAGGGAAAAAGGTGTAAATTTTAAGTGTGTTGTTTTGTAAGTGTAGAGA
TTTTTTTAAAACTTTTAACTGTCTGCTATATTACTCTAATTGTTGAAGAG
ATACTAAGATCATCAATAAGATATATATTGGATTGGTGGATAACAAACAA
TAAAATTTTATGAATTTGTCTTATATAAACTGAAGGTATTTGAGGCCTAG
TCCCAGGGAGTGGTACCCCAAAGTCTTCTTCAAAACCCATAATCCATGCT
TGTTAACTTTCACTCAGTCTAGCACTAGAAAAGCAAGGCCGCAGATATGT
AAGTGACTCTAAATCACTTTAATGTTACAAGGTCACAGAATGTCTCTCCA
GAGTTTTTAATACATCCCAACTTTGCAAAGTTGTGGGTGTTTTTTTTATA
TTAAAATACTAATGCCAAGCAGAAGGAGATATACGATATCCTAGTCTATA
TAAGAGATATCAGTATACGACTTATGCATGAGACTATCAATACATTACTT
ATGCATGAGACTATATATTAGCTTGCTTATATAGTTTTAAGAAAAAATAT
CCATTTCAGGGGAACAGGACACACTACAATCGTACCAGGGGAACTGAAGG
AGTTATTCCCAACTCTCTAGAAGAAGAAATTTTGCCTGATACTGAAGTTG
ACAGCTCTCTATCTTCCAAGTTTCAGCAATATGGTTATAATGTGCCCTCA
CAAACTACTGACACAACAAGCCTGAACAGCACTCAAACCTCAGAATATGC
AGATGCTGAGTCAGGTTTGTTTTTAGACATGCCATCTTAGTTCCTAAGCC
ATATTCAGTGGTCAAGCTTAGATCATGCTTATATTCAACTTTAACTAGTG
TGTTTTACAATGTTTTTATATTTTTTAGAAATTTTTTCCTATTATACTTG
AATAATCCAAAATGTTAATTTTTTTGCAGCATATAGTTACCGATCAGGTT
CTGGGCTCCAATCCTTTCACAAGTTGCAGCAGTCTGACGCAGAAAAGATG
GATGATGCACTTTCTGTGCCTTATTATTCAGCTCTTTCAAGTAAAGTATT
TGCTACAAATTGTTTTCAACCATTTAAGTCGTAAATAGCTCAACACTGTT
CTATGGGAGATTATAATGTATTGAACTGTTAACAGATGATTACCAAGGAA
GCATTCAAGCCACTTCACACATTCAACCCATACATCCGTCTAGAGAATCT
GCCCTGAATATTGTAACGGGATGGGGAAATGAAAATTCTGCCCAAGATTG
CGGAGATGCTTTTGGCAAAATTGAGGAGTTTGGAAATCATTTACGTGGCC
AAGGAGGGTGGCAGGTATGGAATTACTTGAAAACACTTAAAGTACATTCG
TCATGTAATGTTAAATAGTATCTACTTTATGTTTTCTTTTGGCAGGATTT
TTTTTTTTTTTTTTTTTTTTATATTTGCCTCTAGTACCAAAACTGATCTG
TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGGTTTTTTTTTTTTTTTTT
TTTCTTCATATTTGCCTCTAGTACCAAAACTGATCTGTCTACCCAGACTT
TCCCTCTCCTGGGGGGCGGGTGGCTTGGGGATTGGCCTCCTTTATTCATC
CTAAAAATATACCCATGAAGATATAATTAGCTACTTGTGAGATGTGATTG
CCTTCTGATATGGATCATTTATTTTCTCAATAAAAATTGAAAATCTAAAT
TTCTTGTTAGGAAACATAATCGTTGAATGTGTATCCAACTTTTAGCTTTT
ATAAAAATTCTTGAAATTAAAGTTTCATTTTTGATTATTCATCACATGCT
GACTAGCTTAAGTTTCATGTCAAGAACAGCAAGGTGACGCTCTAATCTTT
GAGAAATTTGTCTTGGGTAATCTCTGTAAAAAGCAATGTTATGTTCTGTT
TTATATTTTTCCAAGAATGATAATTTACAATTTCTTTAAGGGCAATCGAT
ATAAGTAGCTGTAACATGCGTAAATAAGATATCTAATTATGAATAGTCCC
ATGACATTTTGTAAAAGTTTAAATTCTTATTCAAAACTGTATTTAGTCTA
TGGAAATCATAAGTGTATTTTACATCAACAATCAAATTGGGATATGCATG
TAAATTAGGAGTTTTTTTTTCTTAAAATCTGCCAGAGATAACTGCATGTT
TTAATCCAACTTGCAAATAGTCTTTTGAAGGTGAATCTTTGCACCTGCCG
AAGTGGTCCATGGAACAGAATTTGCAACAGTACCCAAATTACAATCAGAA
TGCTATGCTTTATGAAGGGAACATTGACTCTTTTGACTTGTTTAATTACA
CGGAGTCACAACATGGTGAGCAGAATGGACAGTTTGCAGCTGCAGAAGTT
GGAAGCTTCATGAAAACAGAGGTGGAGAACAGTGCGACAGTAGATGCGAA
AGCCAATCATTTAGCCTTGAAGCAGCCATTGGATGGCCTTAAAAATCTTG
ATAGCTTTGGTCGATGGATGAGCAAGGAACTCGGAGATGTTAATGAGGCA
CAAATTCAATCTAGCTCTGGGGCTTACTGGGAGGCAGTTGGAAGTGAAGT
CGCAGTTGTCGATTCTAACATTTCCTCTCAACTGGAGTTCGAAACCTACA
CAATGAGCCCCTCTCTTTCCCAAGACCAGCTATTTAGCATTATTGACTTC
TCACCAAACTGTGCTTATTCTGGGACTGAAGTTAAGGTACATTGAATGCT
AACGTTTGAATCCCCTGCTACAAATTTACTTCAAATTTTTTTTTTGGGGA
TATAGAATTCATTTGTAATGATGGATTTGACATGACTGTCATGGAATTGA
ACCAAATCCAGCCCAAAGTATTTTGATAGTCCAAACTTATCATTTGGACC
GAATCCATCATTTGAAATTATGCGGTTGTATGTTTGTATTTCAGGAGAAC
TATATGAAATTTGTAATTTACATGCACTAAAATAAGAAGATTGTTGATGC
ACTAATACATCTTGTATTTTTTTGGCTTATATGATAACTAGGTGGTAATA
ACTGGAAGGTTCTTAAAGAGTCATCAAGACGTTGTGAACTGTAAGTGGGC
GTGCATGTTCGGGGAAGCTGAAGTTCCAGCAGAGGTTGTAGCAGATGGCG
TTCTTCATTGCCATACACCCCATCACGATTCTGGAAGAGTTCCTTTCTAT
GTAACATGTGCCAATAGGCTGGCTTGCAGTGAAATACGCGAATTTGAATT
TAAGGTTTATAATCTCAGAGATGTGGATGCCGCTGATTTAAGTAGTGATA
GTTCAAGTGAGGCTCTTCTTCATATGCGATTTACAAATCTGCTATCCATA
AGATGTGCTTACCATAATTCAGTTCCGGGTATCATGGATGATAATTTGAA
CTTCAGCAGTAACCTTAACTCATTAATAAAGGATGAGAATGAGTGGCAAC
AAATATTTATGCTTACAAGTACAGACGAATTCTCCTCTGAAACATTAGCC
AACCAATTTCCAGAGAAATTACTCAAGGAGAAGTTGCATGCATGGCTCCG
CGAAAAAGTAGCCGAAGGAGGAAAAGGCCCAAGTGTAGTGGATGAGGGTG
GCCAAGGGGTGCTACACTTTGCAGCTGCTCTTGGTTATGATTGGGCTATA
ACTCCCACCGTAGCTGCAGGTGTCAATATCAATTTCCGAGATGTGAATGG
CTGGACTGCACTCCACTGGGCAGCATATTTTGGCAGGTAAAGATATTGAA
TGCTTGTAAATTGTATTCTAGTATGTAGTCTTCTCTTGGTAGAAATCTCT
GCCATTCAAAACTTGTGGACATAATGTGTTTGCTAGTGCACCATTTTGTT
ATTGCATTTCTGGTAATATTTTATTTCTTATTTTCTGTTAACCCAGGGAG
CATACAGTGCCTTTCCTCATCTCTCAAGGGGCAGCTCCTGGAGCATTAAC
GGATCCTTCACCTAAATATCCGAGAGGCAGAGATCCAGCAGAACTTGCTT
CTGCCAATGGGCACAAGGGAATTGCAGGATATATTGCCGAATGTGCATTA
AGTTCCCATCTTTCATCACTCAACTTAAAGGATGCAAATAACTGTGATGC
TGGAGGTGTTCCGAGTCTAAATGATGTGCAGGCAGTTGCAGAGAGGACCC
CAACCCCAATCAGTGATGGGGACTTTCAACAGGGACTTTCCTTGAAGGAT
TCGCTAGCTGCTGTCTGTCATGCTACTCAAGCCGCTGCTCGCATTCATCA
AGTTTACAGGATACAGTCATTCCAGAAGAAGCAGCTAAAAGAATATGATG
ATAGTCAGTTCGGAATGTCAGACGAGCATGCTCTTTCTCTTCTTGCTGTC
AAGTCAAGCAGAGCGGGTCAGCATGATGAGCCGGTCCATGCCGCTGCAAC
CAGAATACAGAATAAGTTCCGTAGTTACAAAGGCAGAAAGGATTTCTTGA
TATTTCGGCAAAGAGTAGTCAAAATTCAGGTTTAATGCAATCCTTCCTCA
ATAAGTAGTATTTAACACAGTTTTTAAAAAAAATTATATTTAACACGGTC
ACACACACTTGACGCACAATTGTCCTTATCTGCAACCATCTAGTTTTGTA
TTTAAACATAATTTTAATTTCAAAGGCTCATGTAAGAGGACACCAAGTGA
GGAAGAACTATAAAAAGATCATCTGGTCTGTGGGAATCCTGGACAAGGTG
ATTTTACGCTGGAAAAGGAAAGGAAGAGGTTTGAGTAGTTTCAAGACAGA
GACACGTCTTGAGGGCCCCAGCACGCAAGGCACATCTTCTAAAGAAGACG
ATTATGATTTCTTGAAAGAAGGCAGAAAGCAGACAGAGGAGAGGTTGCAA
AAGGCCCTTGCTAGGGTAAAGTCAATGGTTCAGTATCCTGAGGCAAGAGA
TCAGTATCGTAGGTTGCTTAATGTTGTTTCTGAGATGAAGGAAACAAAGG
TATTTGATGTCTTAACCTCAAGCATGCATCATATATATTACATGTCTGTT
TCAATCATAAAATTTACAATGCTGAATTTCATTCTGAGATGCAGGAAGCA
AAGATACTTTTATGCTTTGACTTTGAGTATGCATCATATATATCACATGT
CTGTTTAAATCATAGAATCAATAACTACTTGTACTATGCGCTGATACCCA
ATTGCAAGCTATTTATTTGATGGTTACAACTTAAATATCCCTGATGCTGA
TAAATGAAAAAGGATATCTTTGCTGTGTATAAATTTTGATTCTTCAAGTG
GATTATTTTTATTTCCTATCGATTCAGATTTTACTTAATTACCTAGGATT
GCTTAAAAAGAAGCGTATAGCCGACAATAACCAAGACCTGAAAGTTGATT
TTTTTTTTTATAATAATTAAACTCTAGATATTTTATCTTGACCATGTCAA
AACTTGTTCTTCCAAATTTAAAGCAAGACATTTTAGTGGACAAGGTTTAA
TGGGGCTTGCTCATAAAATCATACTCTATTTTATTAACTTCCATAAAATG
GTGTACCAGTATGTAATATTTCTTGATTTCAATCATGCTGCAGGCAACAG
ATGATATGGCAATGAACAACTCAGATGAAGCAGCAGTAACAGCAGACTAT
TTTGACGATGATCTTCTTGATCTTGAAGCATTACTGGGCGATGACACCTT
CATGTTTGCAGAAGCCTGA

Sequence Length:

10369

Sequence Checksum:

5d7cc5d96498655614bc68ee8a19f332

View location in JBrowse:

DCARv2_Chr3:39032834..39043202-

Cds:

>DCAR_011676cds ATGGACATAATTGGAGGAAAAAAAGGGATGGAAAGACAATTAAGGAAGCT CATGAAAGACTCAAGGGAGCTCTCCAACATAGTTCTTGTCCACTACCGGG AAGTAAAGGGGAACAGGACACACTACAATCGTACCAGGGGAACTGAAGGA GTTATTCCCAACTCTCTAGAAGAAGAAATTTTGCCTGATACTGAAGTTGA CAGCTCTCTATCTTCCAAGTTTCAGCAATATGGTTATAATGTGCCCTCAC AAACTACTGACACAACAAGCCTGAACAGCACTCAAACCTCAGAATATGCA GATGCTGAGTCAGCATATAGTTACCGATCAGGTTCTGGGCTCCAATCCTT TCACAAGTTGCAGCAGTCTGACGCAGAAAAGATGGATGATGCACTTTCTG TGCCTTATTATTCAGCTCTTTCAAATGATTACCAAGGAAGCATTCAAGCC ACTTCACACATTCAACCCATACATCCGTCTAGAGAATCTGCCCTGAATAT TGTAACGGGATGGGGAAATGAAAATTCTGCCCAAGATTGCGGAGATGCTT TTGGCAAAATTGAGGAGTTTGGAAATCATTTACGTGGCCAAGGAGGGTGG CAGTCTTTTGAAGGTGAATCTTTGCACCTGCCGAAGTGGTCCATGGAACA GAATTTGCAACAGTACCCAAATTACAATCAGAATGCTATGCTTTATGAAG GGAACATTGACTCTTTTGACTTGTTTAATTACACGGAGTCACAACATGGT GAGCAGAATGGACAGTTTGCAGCTGCAGAAGTTGGAAGCTTCATGAAAAC AGAGGTGGAGAACAGTGCGACAGTAGATGCGAAAGCCAATCATTTAGCCT TGAAGCAGCCATTGGATGGCCTTAAAAATCTTGATAGCTTTGGTCGATGG ATGAGCAAGGAACTCGGAGATGTTAATGAGGCACAAATTCAATCTAGCTC TGGGGCTTACTGGGAGGCAGTTGGAAGTGAAGTCGCAGTTGTCGATTCTA ACATTTCCTCTCAACTGGAGTTCGAAACCTACACAATGAGCCCCTCTCTT TCCCAAGACCAGCTATTTAGCATTATTGACTTCTCACCAAACTGTGCTTA TTCTGGGACTGAAGTTAAGGTGGTAATAACTGGAAGGTTCTTAAAGAGTC ATCAAGACGTTGTGAACTGTAAGTGGGCGTGCATGTTCGGGGAAGCTGAA GTTCCAGCAGAGGTTGTAGCAGATGGCGTTCTTCATTGCCATACACCCCA TCACGATTCTGGAAGAGTTCCTTTCTATGTAACATGTGCCAATAGGCTGG CTTGCAGTGAAATACGCGAATTTGAATTTAAGGTTTATAATCTCAGAGAT GTGGATGCCGCTGATTTAAGTAGTGATAGTTCAAGTGAGGCTCTTCTTCA TATGCGATTTACAAATCTGCTATCCATAAGATGTGCTTACCATAATTCAG TTCCGGGTATCATGGATGATAATTTGAACTTCAGCAGTAACCTTAACTCA TTAATAAAGGATGAGAATGAGTGGCAACAAATATTTATGCTTACAAGTAC AGACGAATTCTCCTCTGAAACATTAGCCAACCAATTTCCAGAGAAATTAC TCAAGGAGAAGTTGCATGCATGGCTCCGCGAAAAAGTAGCCGAAGGAGGA AAAGGCCCAAGTGTAGTGGATGAGGGTGGCCAAGGGGTGCTACACTTTGC AGCTGCTCTTGGTTATGATTGGGCTATAACTCCCACCGTAGCTGCAGGTG TCAATATCAATTTCCGAGATGTGAATGGCTGGACTGCACTCCACTGGGCA GCATATTTTGGCAGGGAGCATACAGTGCCTTTCCTCATCTCTCAAGGGGC AGCTCCTGGAGCATTAACGGATCCTTCACCTAAATATCCGAGAGGCAGAG ATCCAGCAGAACTTGCTTCTGCCAATGGGCACAAGGGAATTGCAGGATAT ATTGCCGAATGTGCATTAAGTTCCCATCTTTCATCACTCAACTTAAAGGA TGCAAATAACTGTGATGCTGGAGGTGTTCCGAGTCTAAATGATGTGCAGG CAGTTGCAGAGAGGACCCCAACCCCAATCAGTGATGGGGACTTTCAACAG GGACTTTCCTTGAAGGATTCGCTAGCTGCTGTCTGTCATGCTACTCAAGC CGCTGCTCGCATTCATCAAGTTTACAGGATACAGTCATTCCAGAAGAAGC AGCTAAAAGAATATGATGATAGTCAGTTCGGAATGTCAGACGAGCATGCT CTTTCTCTTCTTGCTGTCAAGTCAAGCAGAGCGGGTCAGCATGATGAGCC GGTCCATGCCGCTGCAACCAGAATACAGAATAAGTTCCGTAGTTACAAAG GCAGAAAGGATTTCTTGATATTTCGGCAAAGAGTAGTCAAAATTCAGGCT CATGTAAGAGGACACCAAGTGAGGAAGAACTATAAAAAGATCATCTGGTC TGTGGGAATCCTGGACAAGGTGATTTTACGCTGGAAAAGGAAAGGAAGAG GTTTGAGTAGTTTCAAGACAGAGACACGTCTTGAGGGCCCCAGCACGCAA GGCACATCTTCTAAAGAAGACGATTATGATTTCTTGAAAGAAGGCAGAAA GCAGACAGAGGAGAGGTTGCAAAAGGCCCTTGCTAGGGTAAAGTCAATGG TTCAGTATCCTGAGGCAAGAGATCAGTATCGTAGGTTGCTTAATGTTGTT TCTGAGATGAAGGAAACAAAGGCAACAGATGATATGGCAATGAACAACTC AGATGAAGCAGCAGTAACAGCAGACTATTTTGACGATGATCTTCTTGATC TTGAAGCATTACTGGGCGATGACACCTTCATGTTTGCAGAAGCCTGA

Pep:

>DCAR_011676pep MDIIGGKKGMERQLRKLMKDSRELSNIVLVHYREVKGNRTHYNRTRGTEG VIPNSLEEEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYA DAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYSALSNDYQGSIQA TSHIQPIHPSRESALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGW QSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQHG EQNGQFAAAEVGSFMKTEVENSATVDAKANHLALKQPLDGLKNLDSFGRW MSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSL SQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAE VPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRD VDAADLSSDSSSEALLHMRFTNLLSIRCAYHNSVPGIMDDNLNFSSNLNS LIKDENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGG KGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWA AYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGY IAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQ GLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHA LSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQA HVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQ GTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVV SEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFMFAEA*