Resource Type:
Gene
Organism:
Name:
DCAR_011680
Identifier:
DCAR_011680.gene
Locus Tag:
DCAR_011680
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.. Nucleic acids research. 2018 01 04; 46(D1):D1197-D1201.
Cross Reference:
| PRGdb |  |
|---|
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_011680, is a part of gene, DCAR_011680. |
| The genetic_marker, MK008202 3_39089914, is located in gene, DCAR_011680. |
| The genetic_marker, MK001089 GSSR-090, is located in gene, DCAR_011680. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_011680 | DCAR_011680.mRNA | mRNA | DCARv2_Chr3:39080848..39096597 |
Sequence:
ATGTCCTTTAGAAGTTTGTTCTTAAGAATTTGTTTGTGGCTACTTTATGC
AAGGGCTTGTAGTCTTGTGATCAACGCGCAATGATATAATTTTGTTTGAC
TTAGTATAATGAGAAGTAAAAATGTTATTTATCATGTTCTGCTGTTCTAC
TAATTGTCCCTCAATTTGTTAGTCGTACATTAAAATTGATCTTTATTATG
CAGGGTTCAAAGCGTACTTGGTTGGTGGTTGTGTAAGGGATTTACTACTG
AACAGACAACCAAAAGACTATGATATTATAACAAATGCCCAACTTGAGCA
GGTTGTTTTGAAACTCTTGAGTTGATATGTTTTTACTTCTATATAAAATG
CTAGAATGATAATCAAATGGTTTATTCTCGTACATATACATATTTATATA
TAGACACACACACAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGCCATTG
CTCAAAGAAGAACACTCTTAAAAGAATGAAGAACACCATAGAATCTCATC
TAAAATTTGAATTAAATTCTAATTTTAAGTTAATGAACCTTTCATCTTGA
ATAATAATAACATCTAACATGTTTAACAATATATATGGATAAAAAATAAC
ATGATTTATGTAAAATTCATCGTGTAAAATATATACATTTGATTCCATTA
TGGATTATATTCTGGATTCTGTAATATTTCATATTAATAATTTTGATGAG
CTTGGATGTTAGATTTCATATATTAAGTTTAATTGGTGTTTAACTTATGT
AATTATAAGCTTAATAATTTTTTTTTTTTTGTAAAAATTATGTAGTATGA
TAGTGTTCTTTGTTGTTCTTTTTTTAAGGTGTTCTTTGGCTATATCCATG
CAGGTCAAGGAGCAGTTTCGTCGTACTCAAATTGTTGGACGTCAATTTCC
TATATGTATAGTACACTTAAAAAACACGGTTATTGAGGTCAGTAATGTCA
TATTTACTTCTGGTAGTCTAGCACGTAAATAATCTATCCTTTTCAGTGGT
TTGATTTTGATTTATATCATATACCAATAATTATTATTTACCAGGTATCT
AGTTTTGAAACTAAAGTGCGAGGCACTATTGAGGACAAGAAGAAAAAGTT
TCTGATTGTTCAAAGGCCAATAAAGTGCAAGAAACCAGACCTTTTGCTTT
GGAGGGACTGTATGCGTCGCGATTTTACAGTTAACAGGTTTCTGTTAAAG
TGTTTTTGGTTTGAAGTTTTGCATAGTGCGAGGAGTCATGAATGTGGACG
TTTTATGTTCCTTTGTATTAGCTGTTCTAGGTGTTGAATTTGGTCAGCCC
GTAGTTACTCATGCAATTTTGAATTTTGCAGTTTTAAATTGACTCACCTA
GCTTATTTGAAAAGAAATTATGCTAGAATATTTATTTTTAAAAATGCCTG
CTGTACCTTATTGTGTGGGACATGGAAGCATCTTACGTGTCTTTTTGCCT
TAATTTTTGCTTCAATTTTTGGGGCCCTGACTTGAATACTTTTGTTATTA
TCTCCACAACCTGGTAGCAAATTTTTAGAATATAATTCCTTTTCATTTCT
GGAAGATACCTTATCCTTAGCTCTGTATATCTTATTGTATGCTTTATAGT
GTCTGTTTTTGCATTTTCATGCAATGTTTACTTCATTCCTTCTATGTTTT
ATGCTTTCGTACACATTTAACCTTTTTTTTAACATTGTTGGATCAGCTTA
TTCTTCAACCCTTTTGAAAATAAAATATATGATTATGCAAATGGACTGAG
GGATTTAAGGTCCCTAAAGGTGAGCACATACTTTACAATCTATTTACTGA
CCTTTTCGTTTCCCTCAAGCTTTCTAAGATTGTTATGATGTGATATGTGC
TCAGCTACAAACTTTAGTTCCTGCTCATACATCTTTCACAGAGGATAGTG
GTAAGTTTTTTTTTTTTATGTCACATTGGTTCAGTACCAGGATATTTGAG
ATGTATTTTATGTTTGAACTATGTTTTGTTCCCCTTTTCAGCTAGAATCT
TGCGGGCTGTGAGGATAGCAGCTCGTCTTTGCTTGTCGTTTTCGGAGGAA
ATTGAGACTGCAGTATCTGATCTCTCTTTCTCAGTGCGGAGGATATCCCA
GGTACCTTATGCGAATGTTTGGTATAGCTATTAGCTTGCTTATTGTATCA
CATAATCCTGTTCATGATTGCTGCCACCAAATGATTTCTGTCCACTATTG
TACTACAGCTCCAGCTCACCTTATGTTGCTCTTTGTTTTGTTTACCTATT
TAGTAATTAACTAATGATATACATAATTCTAAATATTTTTCAATTATAAT
GCACCTTTATAACATGATAAACCAATACTTTCAGTCCAGAATAATGATGG
AGTTAAACTATATGTTGTCTTATGGAGCTGCTCAGCCTTCAATCTCTCTA
CTTCAGAGACATGGCCTGCTTAAAATTCTGCTACCATTCCATGTGAGCCA
GTCAACATTGCTAGTTTGCTGCTTTGTTGTACTTGTACAGGTTGCTGATT
GTAGAAGCAGCTTGTTTTAACACATTGTTGATACAGGCAGCATATCTTAC
TCAGCAGGAAAGTAAATATGGTGAAAATTCTACAATGTTGATGGTAAGCC
TATTTCTTTAGATAAATATCCATACACGTTCACTATTGATATGGCCTTAA
ACCTAATTGCTCTAAATCATACATATTCATGTAAAACGGTCCCATATATT
GCACATGTTAACACATATCATGCACTCTGTTTTGTTATATTAAATTTATT
TGCTCTCTCTCGTTTCAGAAATTATTACACAATTTAGATCGCGTGTCATC
TTGTGAACAACCTTCTGATTCTGGTTTGTGGTGAGTAGATATTTTGGTCT
CAATATAAGTTTTTGCTTTATGCCTCTTTATTTTAAAGTTAGTGCACATA
CATTGTGTTGCACATATGTTATGTTAATGTATTGTTATTTGTTTTTTTCT
TACATATTATGTATGTGTGTGTGTGTGTGTGTGTGTAGGGTTGTACTTCC
GGATGAACACCTTAAAAAAAAGAGCATAAAAAAACACTAACATAATACTT
TATTTTTCATAAAAAAATGATTTGTTAAGATTATAAACACAAAGTTAGCA
ACAATTAAGGTTAACATATCGAATTTAACGTTGTATCTCATCCAAATTCT
TAAAATCAAATGTTATAGTCACCTTGGAAAAATGATTTGTTTAAGGGTGT
TTCATTTAGGATTCTATGCAAGATTCCATAACATTTGATTGTAATAATTT
GGATGAGATAGATTTAATATGTTAACCTTAACTGTTGCTAAACTTTGTGA
TTCTAATTTTAAGAAATCATTTTTTTATGAAAAAAAAGTATTACGATAGT
GTTTTTTGGTGCTCCTTTTTGTTCTTTCTCTAAAGGTGTTCTCTCTGTAG
TGCGATTATATATATATATATATATATATATATATATATATATATATATA
TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAG
TTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATAGGGTCGCGC
TCAAGAGAGAACCAATGCTTAAAATAGAACCATGGAACCACTAAAGTTGT
GCCGCAGAACCCCTTTTTTTTACATAGATTTTCAGGATCTAAATCTAAAT
ACATGTTTTTTTGCATCATTGTGTGTGTTCAAAAGTAATTTCAAGATATA
ATACATAAATAAGATACTTTTTTATGTGCAGTTCTGCTTCAGAACCCTAA
CTAATACGAGAAATAAGCTAATGGTTCTAAGGTTCTATGGCTAATGGTTC
TATGTGGAACATGACATATATATATATATATATATATATATATATATATA
TATATATATATATATATATAATGTAATGTAATGTAATGTAAATTTATTAA
TTTTCTTACTTGGCTTTAAATGAATTAGTTCCACTTCTAATTAGTTATTT
ACCAATTTTATTTCCCTGATGACAAAAAACACTAGTAGCAAGATCTTAGT
AATGGGATGCTTAGCTTGCATATTTCACAGCCTTTTATATGGTTCTATTT
TTTTGTGGCGTGGCTGTAGTAATTATACTAATAAAAATGTTATATTAAAT
AACTCAACGTTAGAAGAAAACTGATTATATTAGGAGATTTTTGACACTAG
TATTACCAAAATGTGTGAAAGCTTTCTTTATGCTGTGGAGGATTTTGCTT
GTATTCGACTCCAACAGGTGATGTCTTATTGTCTTAGATATAGTATCATT
GCCATTATTTCATCACTTTGAAACAGAAACATATAAAAGCAACTACATTT
TAACAAACTCAAACACATTAAACCAAAAATTAAGTATCGTTTTTTGGATG
ATTAGAAATATAAAATTCATACTTTAACCATATATTTTTCTATGTTGGAG
CCATAGTTTACGTGGGTAAGCTAAGGTCCTAGCCTTTTCATCATCAAATC
TCAGAAGAAACCAGACATTTGTTTTTCACATTTCTGGAATAGGTCCTGTA
TGTACAGCACTGCATTAATAGCTACAACAGTAGAAAAAGTTTTATCATCA
TTTTCTCTAAGCATTTTTTATTAGTTAGTAGGCTGTATGCTATATGTTTT
ACTGAATATTAAATCATCTACCAATGATTTTCTAGTAAGGAAATATTGAA
TAGAGCATTTACTGAGCTAGTAGTAGTTCTGATTACTGGTCTCATTCTGT
TCTCTTGTAAAATTATGCACCATTGTCCTGTGTGTGTGTGTGTGTGTGTA
GATGTGTATATATGCGTGTGCATATATATGTATGTGTATATATATGTGTG
TGTGTGTTTTAAGAAAGTTAGCAGATAAACAAGTTTACATATATGATTAC
AAACAGGGTCGGACTTTTTGCCTTTCATATAGCATTGGTAGGAAACCCTC
AGCATCCTCTTGTAGTTTTGTGTTTAGCCTCTCTTCTGTATTATGGGAAT
TGGAAGGAAGCAATTCATCATGCAAGACTGCAGATTGACGCCCCTAATTG
TTTCGAACCTGAATTTCTGGAAGCAACAGCCTTTTTGTCAGATCATGAAC
TTGCTGAAAGAGTTGACCAGCTGGCTTTTTTAATACACCAATCTGTGCAT
GTTTTGACTGATGCAGACAGTCTGCATGAAATGATGGAAAACTTTCCGGG
CTGCACATCTTCTGGCTTGGTATGTACATCTGTAGAAATTCACATTTGCA
ATCAAGGATGTTATTTTTTTTATGTGTTTTGCTTTTAGCATCTGTATGGT
TCTTTTTAGTCTCGCCTAACTAAGTTAAAATAGATGACTGAGTTGACTTT
AATGAATCTGATTTTAGTGCTGTACCAGAGCAGAGACCTGGATAGTTACA
GTTACGTGAATTCAGTATCCTGATTTCCCGGTTTTGTTCTGGACTATTTG
GTGACTATCAATGGAATTGCAAAACTTAAAACAAAGAACGAAAAATACAA
ACAAACTACGCCTAGAACTACCAACAGGGTGAATGATATTTGTATATTTA
GTGATCATAATGTTTGCTTAGCGAAACATACATGTGTGTATAGATACTTT
TTACATTTGGATTTTCTAGTGTGTGCCCATGGGCACACATTAACAACCAC
TTTTTAATTAGGTGGTAGATTCCTATGTGCTTCTATCCCATTAATAATGA
TGGCCCCCCTGCATGCACAGAAATCTACACCAATTAAAATCTCCCATCTA
AGTAAAAAGTAGGTTTTAGTGTGTGCCCATGGGCACACACTAGAAAGACC
CTTCTATCAAATATCATGTCTGAGTTTTAGTAAATCTTTTACACTCATAT
AGCGAATCTTGCAATTTTTATAGTTTGTAGGTTAATATGGTTTGTAACTG
GACTTGGCCCTTTCATTTATTGTAGTTTTATACTAGACATATCTTGGATA
AAAGCTTTCCTGAATTCGTGAGTTTGCAAACTCTATGAAGATTGAAACAT
CCATCTCTTCATATAAAAAATGCGGAAGTTCTAAAACATTGTACAACCAT
TTTGAAGTTTGGTACCACAGGAAGAAAACTTGCGGGAAGCGTAATTAATG
CTGCAAATCACGTTTATGACCTCATTCGTCATGCTATACTTGTATAGATA
GGATCACATGAAACAATTGTTCTGCAATCTTAAAAAATGGTAAAAGAATG
TATACAAAATCTGCAGTGCACGTGCAAAACAATTGTTCTCATGGTAAAAC
TGTTCTTCATAGAGCGTTTCCTATATAAGATGTATATAACTTAAATGATT
TGACATTTAGTGTATCATGTATTAATTACAATCAATTTCTATATGTTTAA
TGAAAAATGCAGCTGAATTGAGTAACTTGTATGGCCCACTTTAAGTCTTT
GAACCAGCCCATGAGCAGAGGCAGATTACATGTGGGCATGTGGGGACACA
TACATGACTCTAAATTAAATTAAATTAGTAATTTTTATTACTAATATAAT
AATATATATTTCACTACTTGCCCTCATTAAAAGAGGACAAGTGCCTCTAT
AATATTAGTATTGCATACTATTTTGGGCTATTTTATATTTTATAATCTTT
GAAAGATACAATTTTAGCACTTAATATCATAAAAATATCAATAATATAAA
ATAAATATATACAAAGGGTCGTGCTCAAAAGAGAACCTATCCTTAAAATA
GAACCATGAAACCACCAAGGTTCTGCTGCAAAGCCTTAAATTTTAAATAC
ATGTTTTTTGCATCGTTGTGTGTGTTCAAAAATAATTTTAAAATATAATA
CATAAACAAGACACTTTTTGCATGTGCAGTTCTCCTGCGGAACCCTTATT
AATACTAGAAGGTTCTAAGGGTTCTTAGGCTAAAAGTTGTAAGAGGACCA
TAACCCTATATACCAAACAAGACACACACACACACACACACACACACACA
CATATATATATAGATTTAGATTCTATGGAGTAGACAAAAACATTGGAGTA
TTGGAGTACGAGTTATAATTTTTTAGTTTAATCAAATATAATATCCTTCA
TTGTCCAAATTTTTATGTAATTCATCATTTATAAGTTGTCTTAAATATCA
ATCAATCAATAATATTTTTCAACTTTAACAAGTATTAAGATTCATTTTCT
GCTTATTAGTTATATTGCAGAACATAGTGTTCTCTACGTTTTGATTACAA
TATTTATATTGTAGAACATAATCTGCGGGTTGTTGAATGTTTACAAATAT
TGCAGAACAAAAAAAAATCAAATTTAAATGACTAGATTATATTTTTATTT
TCCAATTCTATATTATAAGGTCATGTTCCAGAGAGAACCACTAGGGAGTG
AACCCTTAGAACCATTACCTTATTTTCGGTATCAGTTAGGGTTTTGCAGC
AGAATATTATATGAAAAAAAGTATTAGTTAGGGTTCTGCAGCAGAACTTT
AAATGAAAAAAATGTCTTATTTATGTATATTTTTTTAAATTACTTTTGAA
CACAAACAACGATGCAAACAAAACATGTATTTAGATTTAGATCCTGAAAA
TTTATGAATAATATAAGGTTCTGCAGTAGAACCTTAATGGTTCTATGGTT
TTATTTTAAGCATTGGTTCTCTCTTGAGCGCGACCCATATATATATATAT
ATATATGGGTGGGTTCTGGTACTAACTTACAAACTTACAAACTTTATGCG
TTCAACACATATATAACTTGAGTTCAACATTTTTTTAAAATATTTTGTTG
AACATCGATTAAAATTGTGTTGGAGAAGTACATAAACTAATGTTTTAATG
TAAGAACTAAGTTAAACGTATCATATAACTAATATTTATGTTTCTAGATC
CTACCCAAACCACAGAGGTATAGTTTAAGCAACTTTATAGATATATTCAA
CACAATGATAATTAGTGTTCTACACCCGATGTTGAACCCCAGTTATAAAT
GTGTTGAGGACGATTTATTTATGCATTATTTTTAAAAATTGTGATATTTT
TTGAAGAATTTTCAACATGGATACTTTCGATAACTAAGGATTAACACGAT
GGGATAATAAAAAAAAGTTTGTAAGTTTGTAAATCAAAAATGTTTTTATT
TGATCCTATCCTTATATATATATAGGGTCCTACTCCAATACAAAGTACTA
AAATTCAAATTAAATACAAACCAATGCGATTAAATAGAATGGTAAGGTTT
TTGGGACCGGGGATGGACCCCGAGATGGGCCTAGACGGGGTCTAAGGGGG
CCTAGTAGGGTCAGGACGGGGCCAAGTTTTGGCTCTTAAGGATGTCTGGA
GCCTGTCTAGGGCCTGTGCTGAGCCTTGGGGAAGACCTAGCGAGCCCGAG
GTGGATTGAGTGGGGGCGAGGGTGGGCCCTAGGTGGGTGATGACATATAG
GGGGTGAGTGATGTCATTTAGGTATAGTTTCTTTTGGTTTGTATTTTAGT
TTTTATTTTAGTGGTTTGTATTTGAGCAATTGCCTATATATATATATATT
TATATATATAGGGATAGGATCAAATAAAAACTTTTTTAAGTTACAAACTT
ACAAACTTTTTTTTTATTCTCCCATCGTGTTAATCCTTAGTTATATAAAG
TATCCATGTTGAAAATTATTCAAAAAACATCACAATTTTTAAAAATAACG
CATAAATAAATCGCGTTTTCAACACATTTATAACTGGGGTTCAACATCGG
GTGTTGAACACTAATTATCATTGTGTTGAATATATCTAAAAAGATGTTTA
AACTATACCTCTGGGGTTTGGGTAGGGTCTAGAAACATAAATATTAGTTA
AATAACATGTTTACCTTAGTTCTTACATTTAAAAATTGGTTTATGTACTT
CTCCACCACTATTTTAATCGATGTTCAACAAAATATGTTAAAAAAATGTT
GAACTCAAGTTATATATGTGTTGAACAAAAAAAGTTTGTAAGTTTGTAAG
TTTGTACCAGAACCCTCCCCTATATATATATTTGTGTGTGCGCTCAACTT
AAAACCAATCCTTAAAATAGAACCTTAGAACCACTAAGGTTCTGTTGTAG
AACTTAAATTTTGAATAGACTTTCAGGATCTAAATCTAAATACTTTTTTT
TTTGCATCGTTGTGTGTGTTCAAGAATAATTTCAAAATATAATACATAAA
CACAATATTTTGCATGTGCAAAATATGTAGAACCTAAATTTTAAATAGAC
TATCAGGATCTAAATCTAAATACATTTTTTTTGCATCGTTGTGTGTGTTT
AAGAACAATTTCAAAATATAATACATAAACACAATATTTTGCATGTGCAA
TTCTATTGCGGAACCCTAATTAATACTAGAAATAATGCAAAATTCTACCC
ATGAACTCACTCTACGTAAATATCATATTAATACTACAGAATAAAGCGAA
TTTTGCTACAAAATTTTATGTTTAACACCTGAACTGTACGTAAATAACAC
ATTAATACTACACAATAAAGTGAATTCTGCCGGAGAACTCTAATTAATAC
TACAAATAAGGCAAGTGCTGTTGCAGAACCCAAAATTTTGAATAAACTCT
TTGAATTTAATTGTTAAAATATCTCATGATTTCAATACAAAATACAAAGT
TCAGCTGAAGAATACAAAACTACAAAATAAGGCTAGTTCTGCTGCAGAAT
CTTAGTTAACTTACCTAAGAGGTATAAGTTCTAAGAGTTCTAGGCTAAAG
GTTCTAAGAGGAACACAACCCTATATATATAAATATTTTTAAAAATAAAT
AAATTCAGAGGCAGTCAGCTTTGCGGAACATAACATATCACGTGCCCACA
GCGGGAAAAATTTCTAAATCTGCCATTACCCATGAGGGAGATTTAAGTTG
CGATATTTCCCCTTCTTTTTACCCTATTAAAATATTCTTGATATTAAGAT
AATTTTAATGAGGGAACTGTTAGTCACAAAGTTGTAATAATATTAGGGAA
CAAGTATAGTAATAGTTGTTTAATAATTTAATAAGTCTTGGATGACAATT
ATGGAACTTCTTGGTCGCTAAATGGCTATATAAACATAGGTTGATATGTT
TAAGATATGGGTTTTGAGAGGTTGATTATTTTAATTATGAGAGCATGGTT
TGTTTGATTAGAGGTCTCAAGCTCGAGACCTGATACACTCATAATAGTCT
CAGAACTTAATGCGGATCCCTAGTTGGCCCTTGCTCTTTGGGGGTCTGTT
GTATCCTTTTTAATGGGTTATAGTGATCTACTCTTGACCCTATGGCAACT
TAATATATGGGGCGCTATAGTTTTAAAATGTGTGTCCCATTTGGTGGCTT
CTCAAACATGAAATACCGCTTTGTCAACCATCTTCTAAATTTGTTTTGTT
AATATAGTTTATTTAACAATCACTTATGCAGTTTGCCACTTGAGGTCCAA
TGTCGTAGAGTTCACATACTTATTTTGTGTAAATAATTTTATTTCAGGTA
TTCGTGCCAAAAAATATGAGGAGCTATATTGAAAATGTTTTTGGTGGGAT
TGATGGACTTGTACACAACTCGAAGGGACGAATGAGCTTTGATATAGATT
ATGAGTTGCTTCAAAAACGTGATGTAAAAGAATCAAGGTTTGTTATTGGG
AAAATTGTAATGGAAACCCTCTGTTGTGCGGGAGACCATGAAGTCACATC
TCAGAGGGATAATGACCCGATCGAGAAGAAAATAGTAGAGAAACAGGAAA
CATCATCTTCTTGTCAGTCACTGACAGCAAGGAACATGATGTCTAATGAA
GACGTGTTCACAGGGGTAAAACAAGAACTGCAACAGAAGAAGGAAGAGAA
ACAACAGAAAACTAAAAAGCAGAAGGTGGTCAAAATTGAGGACAATACAT
ATGTGAAATCAAAAGTAATAGGTGAGGGAAGACATCTGTTATCAGAGAGC
CAGGTGGCCGAAATGCAGAAGGCAGTTGAAAATTGCGAAGAAATAACCCA
TAGTAAATGTAATTTTCGTGAAGCTGATGTAGCTGCCAAACACAATAAGA
AGCGGAAATTGCATGCAAGTAAAAGAAAAGGAGGCTTGCATCTGCTATCT
GCTCTGTTCAAGTGAATGTAATAATCTGTTGTGTATACTTTGTAGGAATA
ACCAAAAAATAGGCAGGTACGTGTAATTCATTTAGTGTTCACAACCAAAA
GATCAAATCTTGGTGATAGAGGGGTTTGATTTTTTTTGGCAGCTTGCTTA
GTTTTTAGATTATTTCGGGTAGGTTAAGTGCCCGTTTGACCGAGTTCATG
ATTTATAACTAACGTGATTTATGATTTAACGTGACTTATGTGATAAGTTG
AGAGTTTAAAGTGTCTGCTTGGATAATTTTGATTTATTAATGACTTTTGA
GTTATTAAAAATATAATAATAAAAATAAAAGTAATTTATAGGTAACTCAT
GTCTTATAAGTAATTTTCATCAAAAAAAGGTTTTAAAAAAATTAATTTAT
TGAAAAAAGTATCTCAACCTAATTTTTGATTTTAAGTCCGTTTTTGTCTT
ATTTCTTACTCTAAGTCAACTTGTAACTTATTAGAGCTCTGCATAATGGT
TTTCTTTTAAACATGACTCTATATAACGAATATCTTTTGGGTAGTCGTTT
GCAAATTTTACTTTTTAGTTAATTTACTTTCAAATCAAGTAACATGAGCG
GAGATCGTCTATCTAATGATAAATTTCACTCTTTAATTTAAAATATAAAA
TATAAAAATAAAAATACAATGAAATTGTAGCTCTCTTGCTTAGACTAAAA
GAATAGACGTTGAAACTTCCACCTAGATGTGACCAAGAAGTGAGGGAATA
AGAGGGTCCAAGGAGCTGTCTAAGTCAACAACTCATGGTACGTGTCTTTG
TATATTGTAGTACCGCTGGTCTACAATTCTAAATTCTTGGGCTCTGCCCT
TGAACACTGCCCAAGTTTCATTATATAAATCCTTTTTCGTCTCGGACAAG
GCTGTTCTTGAAGTGAATACTCTAGATATAATTTCTCGCAACTTAATGCA
TTTTTCACTTTCATCTATCTTGTTAATATCATTATCATGTTTTGTTAATC
GATCATTTTCAGACCATGCAGATACGAGTCTGGCATGCAGTAAGAAAACA
GTTCTTGATCCGTCCGAGCGTCAAGGTTTCATGACAAGCTATTTGTTAGC
TATGGTCTCACTCACTGAATCAGTTTCTATGCAAAGTTATGGAGCTGCTG
AAAATGGCACTGTTTTCGCATTTGCAGATTGCAGGAGAGATCTGTCGAAA
AATGACTGCATTCTTTGTGTTGAACACTGCAAAGTAAAGTTGCATAGCTG
CCTATTTTTTCAGAGTGTGTTTCTTGGTGGTAGGGTTTATAATAACTTTG
ATGGATGCTTCTTAAGGTATGATGGTTATCGGTTTTTCGGGGAGATCTCG
GATGATGAGGTGTTTTGTGCAGGGAATGAGTTTGCGGGGAACAAGAGTTT
GTTGAGAGAAAGTGTTGGTGAATTAGTGAGGAATTTGGGTGTGAAAGGGG
CTAAAAATGAAGGGTTTTCTGTAGGTAACTACAACAAGGGTGATTTTCAG
GTTTATGGATTGGTTCAGTGTTGGAGATTTCTGAATAAAACTGATTGTGA
AAAGTGTTTGGAGGGTTTGGTAGCAAAAGTTGGTTCTTGTCTGCCAAAAA
CTGAGGGAAGTGTTTTGAATTCTGGATGTTATGTCAGGTACTCTACACAC
AAATTCTATCATAATTCAAGGACCACTGCTGCATCAATACAAACCAAAGG
CAAGTACATGTTTTTCTCTATTTTCTTATTTTCAGCCACATTTTAGGTTA
TTCAGAAATCCACAATGAGAAGGTAAAGAGACAATGCCATAGGTAAATGA
ACTTTTAATCATAGTCCTGATTTGTACATACAATATCTATATTATAATAA
CAAGATGAAGATCAATTTAAGTTAGCCAGCAGATTTTATATTAGTTTTTT
ATTGTTGATCTTTGATTCATCTGAGGCATAATTTAAGTTTATGTATCAAT
CACAAAGAACAATGACTTATTAGTAATTTATAACCATTACTTTACACCAG
CTATAAGGGAAACAGGCAGGTGATGGGGACTTTTGGTAGTTGCACTAATT
TGACTATTAGTCCAGACCAGTCCTAAAGTATACGAGGCCTGACCCACTTT
CTATCTATAATGGAGTAATAATTCTATTCCAAATTATTATTTGCCTCATA
TTCACACTGTATACATCTCCAATTACTTTTATCAATTGACTTAAACCAAA
GATATTGAGGAACTCATTTGCTGAATGGTTATGCTAATGCTGATATATTT
TGTTTGTCATATATCAAGAATGTGTATGTAAACATGAACTCCTGTCGATT
TCAGACGTTTTACAACATAATGTTCGATGATTGTTTCAATATACTTTCAC
GGATGCAGAAAGGTGAAAATCCCAAACTTCTGTGCTTAAGGGTGAATAGA
GACCCTTTATTTGCAAAAAAATAAAACAAGTGGTAAATTTTTTTCTATCA
CAGATTATAAATGCGGCAAGAAATGTTATAACACTTATCTATTAGGGACT
AGACCATATAAACACATAATTTGTACATAAATTTGTAAGGGTCACAGTTT
ACTTGAGCTAATAATTAGCAGTAAATGGTTATCCTGATTGTAATATGAGA
TTTACAACAATTAAGAGTTAAAAGAGTCAGTTGTACATTTGCTAAATAAT
TAGTTTTATCTGAACTTTATCATTCCTCTTCTGCAAACAAAACAACCAAA
GTTTAACAGTGGCTTGTTCATGTGGCCACAGGAGGAAGCAAACATTTAAC
ACTTGTTCTGGCTGGAATTTCAGCTGGTATAGCTTCTTTGATGCTTGCAT
CAACCACATATTTCTTTTTAAAGAAGCACATGGAAAAACAAAGAAGAGGT
ACTCGATATACTCACATGAAATCATCAAACAATAGAATTGGCATGACCAT
ATGTTTGGTATCATAACTGGCATTTTACATTTGAATTTGTTCAAGTGTAA
TTCATATGATTGAAGTAGCTTGCTCTGTTGTAGAGAAAGAGCAATATGAT
TATTTGGCCTCTGTCACCGACTCCAAACTCATTTTCTCCTATGAAATGCT
TGAAAAGGCGACTAAATACTTTCATGATTCCAATAAGCTTGGAGAAGGGG
GATCAGGCCATATTTATAAGGTAGATTGTCCTATTTTGGATATTTCATTT
CCGGAGTATTACCCAAGAAAGCAAAATATTGGGAGAGGGTGACAAACGAA
AACGAATAGTAGAATATTCATGATCTGTGTGATTTTCCTAACAGGGAAGA
TTACCAGACGGGAGGACAGTTGCTATAAAGAGGATATTATTCGACACAAA
ACAGTGGGCTGAACACTTATTCAATGAAGTAAATCTGATAAGTGGAATCA
ATCATAAGAATCATGTCAAGCTTTTGGGTTACAGCGTTACCGGACCAGAA
AGCCTTCTTGTTTATGAGTACATGCCCAACCAGAGCCTTCACGATTACTT
CTTTGGTTGTTACTTGATATTTTATCCTTTCCTCTTCTTTACACACACAC
ACGACATATGTACACTCACACGATTACTTGGTTTGAGGGTTCAAGATGCT
AAACAATTCATGTTTCAGGGAAAAAGAATGTGGAAGCATTAAAATGGGAC
GTGAGATACAATATACTATTAGGAACAGCAGAGGGGTTGATGTATCTGCA
TGAAGATTCAAATTTAAGGATCATACATAGAGATATAAAGTTAAGCAACA
TTCTTCTTGATAAAGAATTTACTCCCAAAATTGCGGATTTTGGGCTGGCT
AGATTATTTCCTCATGATAAAACTCACCTCTCCTCTGCCATTGCAGGAAC
ACTGTAAGTAATGAACTTCTTTGCATCCTCAATGCAGAATTGGGCATTTA
TAATATACTAATTTGTGTTGACATATGTTTGTTGCAAATTAAGTCCAAAT
TTGTTTTTTATATGCAGCGGTTACATGGCTCCAGAGTATGTTTTTAGTGG
CAGATTGACGGAGAAGGCAGATGTTTATAGTTTTGGTGTCGTCGTTATTG
AAGTGGTGTGTGGACGTCAAAATTATGCCTTTTCTGAGAGCACAATTCCA
CTCCTGGAAATGGTACATTTGAATATCGCAACCTCATATTTTCTGCCAAC
ATTTTTTCAATTTTCTGAAGTGAGGTCCTAAACTTTTTGCCTTGGTATAT
TCAATTTGATTATATCCCAGCTAATAATTTCTTCGTATGCTGATTTTTGA
AAGGTTTGGAATTCTTACCAAAAAGGCAAACTCTGTGAAGAAATTGATCC
TGTGGTGAAGGCGAGTTTTCAAGAAGATGCAGAAAGGGTGCTGAAGATTG
GTCTGCTTTGTGCTCAGGCATCTGCAGAACTACGTCCGTCTATGTCTAAA
GTTGTTAAAATGCTAATGAATAATCAACAGCTACCTCAGCCAACACAGCC
ACCATTTATCAGTTCTCGTTATGTTGAAAAAATTCCGCTGAAAATATGA
Sequence Length:
15749
Sequence Checksum:
3ed7cfb6e89f2dcf73e17478fe71f535
View location in JBrowse:
Cds:
>DCAR_011680cds ATGTCCTTTAGAAGGTTCAAAGCGTACTTGGTTGGTGGTTGTGTAAGGGA TTTACTACTGAACAGACAACCAAAAGACTATGATATTATAACAAATGCCC AACTTGAGCAGGTCAAGGAGCAGTTTCGTCGTACTCAAATTGTTGGACGT CAATTTCCTATATGTATAGTACACTTAAAAAACACGGTTATTGAGGTATC TAGTTTTGAAACTAAAGTGCGAGGCACTATTGAGGACAAGAAGAAAAAGT TTCTGATTGTTCAAAGGCCAATAAAGTGCAAGAAACCAGACCTTTTGCTT TGGAGGGACTGTATGCGTCGCGATTTTACAGTTAACAGCTTATTCTTCAA CCCTTTTGAAAATAAAATATATGATTATGCAAATGGACTGAGGGATTTAA GGTCCCTAAAGCTACAAACTTTAGTTCCTGCTCATACATCTTTCACAGAG GATAGTGCTAGAATCTTGCGGGCTGTGAGGATAGCAGCTCGTCTTTGCTT GTCGTTTTCGGAGGAAATTGAGACTGCAGTATCTGATCTCTCTTTCTCAG TGCGGAGGATATCCCAGGCAGCATATCTTACTCAGCAGGAAAGTAAATAT GGTGAAAATTCTACAATGTTGATGAAATTATTACACAATTTAGATCGCGT GTCATCTTGTGAACAACCTTCTGATTCTGGTTTGTGGGTCGGACTTTTTG CCTTTCATATAGCATTGGTAGGAAACCCTCAGCATCCTCTTGTAGTTTTG TGTTTAGCCTCTCTTCTGTATTATGGGAATTGGAAGGAAGCAATTCATCA TGCAAGACTGCAGATTGACGCCCCTAATTGTTTCGAACCTGAATTTCTGG AAGCAACAGCCTTTTTGTCAGATCATGAACTTGCTGAAAGAGTTGACCAG CTGGCTTTTTTAATACACCAATCTGTGCATGTTTTGACTGATGCAGACAG TCTGCATGAAATGATGGAAAACTTTCCGGGCTGCACATCTTCTGGCTTGG TATTCGTGCCAAAAAATATGAGGAGCTATATTGAAAATGTTTTTGGTGGG ATTGATGGACTTGTACACAACTCGAAGGGACGAATGAGCTTTGATATAGA TTATGAGTTGCTTCAAAAACGTGATGTAAAAGAATCAAGGTTTGTTATTG GGAAAATTGTAATGGAAACCCTCTGTTGTGCGGGAGACCATGAAGTCACA TCTCAGAGGGATAATGACCCGATCGAGAAGAAAATAGTAGAGAAACAGGA AACATCATCTTCTTGTCAGTCACTGACAGCAAGGAACATGATGTCTAATG AAGACGTGTTCACAGGGGTAAAACAAGAACTGCAACAGAAGAAGGAAGAG AAACAACAGAAAACTAAAAAGCAGAAGGTGGTCAAAATTGAGGACAATAC ATATGTGAAATCAAAAGTAATAGGTGAGGGAAGACATCTGTTATCAGAGA GCCAGGTGGCCGAAATGCAGAAGGCAGTTGAAAATTGCGAAGAAATAACC CATAGTAAATGTAATTTTCGTGAAGCTGATGTAGCTGCCAAACACAATAA GAAGCGGAAATTGCATGCAAACCATGCAGATACGAGTCTGGCATGCAGTA AGAAAACAGTTCTTGATCCGTCCGAGCGTCAAGGTTTCATGACAAGCTAT TTGTTAGCTATGGTCTCACTCACTGAATCAGTTTCTATGCAAAGTTATGG AGCTGCTGAAAATGGCACTGTTTTCGCATTTGCAGATTGCAGGAGAGATC TGTCGAAAAATGACTGCATTCTTTGTGTTGAACACTGCAAAGTAAAGTTG CATAGCTGCCTATTTTTTCAGAGTGTGTTTCTTGGTGGTAGGGTTTATAA TAACTTTGATGGATGCTTCTTAAGGTATGATGGTTATCGGTTTTTCGGGG AGATCTCGGATGATGAGGTGTTTTGTGCAGGGAATGAGTTTGCGGGGAAC AAGAGTTTGTTGAGAGAAAGTGTTGGTGAATTAGTGAGGAATTTGGGTGT GAAAGGGGCTAAAAATGAAGGGTTTTCTGTAGGTAACTACAACAAGGGTG ATTTTCAGGTTTATGGATTGGTTCAGTGTTGGAGATTTCTGAATAAAACT GATTGTGAAAAGTGTTTGGAGGGTTTGGTAGCAAAAGTTGGTTCTTGTCT GCCAAAAACTGAGGGAAGTGTTTTGAATTCTGGATGTTATGTCAGCCACA TTTTAGGTTATTCAGAAATCCACAATGAGAAGGTAAAGAGACAATGCCAT AGTGTAATTCATATGATTGAAGTAGCTTGCTCTGTTGTAGAGAAAGAGCA ATATGATTATTTGGCCTCTGTCACCGACTCCAAACTCATTTTCTCCTATG AAATGCTTGAAAAGGCGACTAAATACTTTCATGATTCCAATAAGCTTGGA GAAGGGGGATCAGGCCATATTTATAAGGGAAGATTACCAGACGGGAGGAC AGTTGCTATAAAGAGGATATTATTCGACACAAAACAGTGGGCTGAACACT TATTCAATGAAGTAAATCTGATAAGTGGAATCAATCATAAGAATCATGTC AAGCTTTTGGGTTACAGCGTTACCGGACCAGAAAGCCTTCTTGTTTATGA GTACATGCCCAACCAGAGCCTTCACGATTACTTCTTTGGGAAAAAGAATG TGGAAGCATTAAAATGGGACGTGAGATACAATATACTATTAGGAACAGCA GAGGGGTTGATGTATCTGCATGAAGATTCAAATTTAAGGATCATACATAG AGATATAAAGTTAAGCAACATTCTTCTTGATAAAGAATTTACTCCCAAAA TTGCGGATTTTGGGCTGGCTAGATTATTTCCTCATGATAAAACTCACCTC TCCTCTGCCATTGCAGGAACACTCGGTTACATGGCTCCAGAGTATGTTTT TAGTGGCAGATTGACGGAGAAGGCAGATGTTTATAGTTTTGGTGTCGTCG TTATTGAAGTGGTGTGTGGACGTCAAAATTATGCCTTTTCTGAGAGCACA ATTCCACTCCTGGAAATGGTTTGGAATTCTTACCAAAAAGGCAAACTCTG TGAAGAAATTGATCCTGTGGTGAAGGCGAGTTTTCAAGAAGATGCAGAAA GGGTGCTGAAGATTGGTCTGCTTTGTGCTCAGGCATCTGCAGAACTACGT CCGTCTATGTCTAAAGTTGTTAAAATGCTAATGAATAATCAACAGCTACC TCAGCCAACACAGCCACCATTTATCAGTTCTCGTTATGTTGAAAAAATTC CGCTGAAAATATGA
Pep:
>DCAR_011680pep MSFRRFKAYLVGGCVRDLLLNRQPKDYDIITNAQLEQVKEQFRRTQIVGR QFPICIVHLKNTVIEVSSFETKVRGTIEDKKKKFLIVQRPIKCKKPDLLL WRDCMRRDFTVNSLFFNPFENKIYDYANGLRDLRSLKLQTLVPAHTSFTE DSARILRAVRIAARLCLSFSEEIETAVSDLSFSVRRISQAAYLTQQESKY GENSTMLMKLLHNLDRVSSCEQPSDSGLWVGLFAFHIALVGNPQHPLVVL CLASLLYYGNWKEAIHHARLQIDAPNCFEPEFLEATAFLSDHELAERVDQ LAFLIHQSVHVLTDADSLHEMMENFPGCTSSGLVFVPKNMRSYIENVFGG IDGLVHNSKGRMSFDIDYELLQKRDVKESRFVIGKIVMETLCCAGDHEVT SQRDNDPIEKKIVEKQETSSSCQSLTARNMMSNEDVFTGVKQELQQKKEE KQQKTKKQKVVKIEDNTYVKSKVIGEGRHLLSESQVAEMQKAVENCEEIT HSKCNFREADVAAKHNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSY LLAMVSLTESVSMQSYGAAENGTVFAFADCRRDLSKNDCILCVEHCKVKL HSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEISDDEVFCAGNEFAGN KSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKT DCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHILGYSEIHNEKVKRQCH SVIHMIEVACSVVEKEQYDYLASVTDSKLIFSYEMLEKATKYFHDSNKLG EGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHV KLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTA EGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHL SSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSEST IPLLEMVWNSYQKGKLCEEIDPVVKASFQEDAERVLKIGLLCAQASAELR PSMSKVVKMLMNNQQLPQPTQPPFISSRYVEKIPLKI*