DCAR_011713 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_011713

Identifier:

DCAR_011713.gene

Locus Tag:

DCAR_011713

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_011713, is a part of gene, DCAR_011713.
The genetic_marker, MK009536 3_39522852, is located in gene, DCAR_011713.
The genetic_marker, MK017690 3_39522902, is located in gene, DCAR_011713.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_011713	DCAR_011713.mRNA	mRNA	DCARv2_Chr3:39521463..39531468

Sequence:

ATGGAGAAAGATTTGGTAGAAGAACTAAAACAGGCTCGTAGACTAGTTGT
GAGCTTAGCGAAAGAGGTTGATTTCAAGAATCAGAAGCTTTGGGAATTGG
AGCGCAAGTTCAATGAGGCTTCTACTGCTTTGGGGAGAATGGTTGCTGAG
AAAGATAAGCTCCATGAATCTTTTGCTGAAGGTTGTATCTATATTCTTCT
ATATTCTAGTAATGTATTAAAATTTTCCATCTGGGTCAATCTGAAAACTT
GTTTTGATTGTGTTCTTGAAAGAAAGATGCCATTTTTTATTTTTTTTCTG
ATATTTTATGGGCTAATTTGGTTATATGAGTTGGGTTTTTGTATTAGAAT
GTAAAGGATTTGTTTTTGAATTTGGGTGTTTTTGGTAGGCTTGATGTATG
TTGAATTTGTTTCGACTATGAAATGACGATTGCTTGTTATGAATTTACGC
AGAAATGAGGAAGATGCAGTTCATTAAACTAAAAAGCGAACAGTTAAAAT
ATGAAAAAAAGTACTGGAGTATATGTCATCTAGCTGATCCTAACAACTTG
TTTATAAGAAAGAAAATTCAATAGGTTGTCGGAATTTCATTATTTGATGT
GTTATATTAAGTGGGTTGTTTCTAGTAGATTGGAAATGATTTGATTTATG
TTTGTTTACTTGTTCTTTGTTTTTGGATCGTTTAACAAACTTGAGAATAA
CATTGTTCACGTTATAAAGAAACACTCTGCAAGCCTGACCCAGCAGCCCG
AATTCAGAAGGCATATGAAACTTACTGTTGAGTGTTGACAGCTTGGATGC
GTACCAACTAAATTGTTTTGATAATCACATTCAGCCATTGATGACCCTCA
ATCCAAATCAATGCCTCTTTGATACCAATTATTTTAGCAATCTCAGGTTG
TACGTACCTGACCCATTTTACAAATAGTATTTGCTTTTAACAGCTAACTG
ACCATCATGTCCTCTGTCCAAGTAATCAATATCGAACGTACCTTCTTGCT
CAAAAATTGCCCCAGCGACGTGTACTTTGATCTGATTTTCTGCTATTGCA
GTCCAATGCTCATATACCTTATCATCTTTAGTATTGGATAACAAAGATTC
CCCTTTTCTTGATTTAGCAAAATTGTATTGATCAAGAGCAACTCTTGCTG
ATTGAACAACGAAAGCGGCAGTAGATTTCTTTTGCTTCCAAAAATACCTC
ATTTGTCCATATACACCAACAAACCATGGCGGCCACCTCCAGCTGCACTG
GACCAGCTATGCTTGATAGCTCCATGAACCATTGGCGAAATTCTGTCTCA
TTTCTTTGGTTGAAAATTGATCTATTCCAACTGGCCCGAGCAGAAGAACA
GCCAAATAAAGCATGAAACTTGGTTTCATCAGCAGCGTAGCAGAGAGAAC
AAATACTACTAACAGGCACATGTTTTTTTTGGAGTTGTACACAGGTTGGT
AATGAATTTGTTGCAGCTAGCCAGAGAAAAATTTCAAACTTTAAGATTTA
TCTTCGAGTTCCATAACATTCTCCAAAAACCAGCTGTATTATTCAAAGAT
TACCTCCCATTTAAATTTTCCAGATGCTTGTAGGGCCATATGCACTTTTA
ACAGAATAACGTGCATCCTTTTCAAATTTCAAAGACCAGTAAACAAGCTC
AGAAGACGCTCTGAGCTGAATAGACATGATCTCTGGTCCCTTTCCTGAAA
CAGATCTTTGATAAGATCAGCATCCCATTCTCTTCTGCCTTCCTTCATAA
GGCAATTCACAGTAGCCTCTATCAACCCTGCATGAGAAGAAATGATGAAA
GAATTATTTATGTCAGGTAACCAAGGGTCATTCAGTACATTGACTAACAT
ACCTGCTCCAAGACTTTTCACACAAGGCTTGGATTATTTCCCAATTTCGC
AGTGATAAAATGGTCCTTGAATATTTTCTCTACAAGTGAATCCTCCTTTA
CTAACAGCCTTCAACCTTGTTACGAACTATGTACTTCGTGTTTGACATGA
TCGTATTTAGTTTTGCAGAAATGAGGAAGATGCAGTTCATTGAGCTAAAA
AGTGGACAGTTAAAATATGAAAAAATTATATATGTCATCTGGATGATTCT
AAAACTTCTTTATAAGAAATTATTTTTCATTAAATTGTCAAAATCTCATG
ATCTGATGTGTTATAATACGTCGGTTCTTTCTAGTATATTGTAAAAGATT
TATGACTGTTTACATGTACTATATTTTGGGTCTTTTCAGTAGGCTTGAAG
TATGATTGAATTTTTTTTTTTTAGTCTTGTCCAGGAACAAAAATTGCTTG
TTTTGTGCATTTTTTCGCATATATTGATATTGTACAAGAACTATATTCTG
AGTTTTTGAACATGATTGTTGGTTTTGCAGAGATGAGGAAGATGCAGTTC
ATTGAGCAAAAAAGTGAACAGCTGAAATATGAATCAGAGTGTAAAATAAA
GAAGATTCAATCAAATGGGGTAGAAAATGAAAAGCTGATACAAGATTTGT
TCTATAAACAGAAAGAACTTGAGCAGCAAAAATCAGAATTGGATAAGCGA
GAAGCGGAATTTGAAGTCGAGCGTAAAAAATTTCTGGCCGAAAAGGAAAA
GGTAAGGCTATTATCTTGTATACATGGACATTCCAAAATGTGTCTGTCCG
TGTAATGTACATTATATATAATGGCAGTTAGATTAGTTAAGAAATTTAGG
TCTGGAAGAGATGGTTTCTACTTTCTACCAATATACCATTTTGGAGATAG
AAGTGTTCTTGTGCTATTCTCAACTTTACTCTTAAAAAGTTATCCTGTTT
TTATTGGGATTTTTGAATATTAATGTCAAGAGAATATGGTGCGGTCAAAA
TTGTTCCTTTATTTTGTGCATATGATTTTCATTGTTCTCATGTAATGTGT
TCTCGTGTCTGTTTTGTGTTGATTGTAACTTATAAATTTATTTATTTTCT
TGTCAAATATGATACTTTTACATGCCATGCCGAGAGAGATAAATTTGGTT
TTGTTTTCCTCGGTGAAAATCTGTTAGTATTTACTCAGTTCCTTCAAAAC
ACCCTGAAATATTTCCAAGAATAGTCGTACCTGACCCCTCACCTCTGAAT
AATTTACTAGCAATCTGATTGCTTTTAGCGGCTAAAGCTTTCAGTTTTAC
ATTCTCTATCAAACATTGATATATTAAGCCTTTTCTACCAAAACTATTTC
TTAGGTCTTGAGGAAAAAAGTTGCTTCCGGTATCTATATTCTTATTAAGC
TTACAGTCTAATAACATCTAAATAATCTTGTAACATGTCTCATTTGTATT
ATCGGATGCAGCTGAAATCTCAAGTTCCTCTTGAGGGTGACTATAACATG
ACATTCCAGATAGAGGATCTAATGTCAGAGTTGGCCGAAAAGACTGAGGA
ATTGAATGATATGGAAGTTCTAAACCAAACTCTTATTATGAAAGAGCACA
TGAGCAATGATCAGTTACAGGAGGCGCGCAAAGAATTATTAAATGTGAGA
CTAATGGATTCTGATTTTCTTAAATATGTTTCATTTTTTGGGTTTTAGTG
ATTCTATAAAACATATAATTATTTAGCTATAGTAAATCATATCAAGTTTT
CTATTCAAAGCTAACATCCTAAGTGTATGTGCAGGTTTTACCAGATCTTA
CAGATAGTTCTGTAGTTGGAGTCAAGAGGATGGGAGAGGTTAATCAAAAA
CCCTTTCAAGACGCGTGCTTGCAGAAATTCTCAATTGAAGAAGCAGAGAT
GAGAGCTATGGAGCTAAGCTCATTATGGCAGATCAAGGTCAATAATTCAA
ACTGGCATCCTTTTAAGCAAGTCTTTAAAGATGAGAAGTTGCAGGTACGG
AAATTTCCACTTTTTTCAACTCATTGTTGTACATCATGATCCGTCTTTTA
AGTGTTGAAGATTTCCAATTGCAGGAGCCCTATATGATAATTTCTCTTTT
CATGTCTTTCTTTTGGCAATTAATTTAGCGGTTCCAACTTGAAAAAGTCA
TACGTAGTTCCTTATATATCCCCGTGTGTCCGCAAATCAAATGTCTGATT
GAATTAGTTGATAAGGACCTGGTTCATCCTTTCTAGTTCTGTCAAAAATC
AAGTTTAGGGATTAGACTAATGGAAATTGCAAGTGACAGGGTGGAAGAGT
GATGGATGATCTATGTTTACGAATAGCATTACGTCTGTAAGATGTAGGAA
GTATTTAGCTTTGTCAGACTCTTACACTATATTATTTATAATTTTTAGTA
GCAAAAACAAAGTGTAATACGCGAGCAGAAAACATCACACATATTTGTCT
CCAGAGTAACTGATCTTTCAATTCCAAAAAGTTTATATTAGATCCGGGAA
CTTGTGTCGCTAACTACCACCGTTATCATCAAAATATGTGCTTTTCTATC
TATGTCACTTTTATTAGACAATAGCTTAACAGCTAGTTTTGCCAAACACT
TTGATTCGAAATAGCTAAAACTCACTGCTTGTAACAGCTCCATTTTGTAG
CCACAACTCACAGCTATAGCTAGTTACGTAATATCTGGCACTCAAATCTT
GATTTATCACTCATATCTGTTGGTTTGTTTATTTTTTTACAAATAAGGGT
TTATGGATCCTTTTGCATTTGACTCTAATTTAGGAAAACTTAACCCTCAT
TTTAAGCATCATGTTAGTAGCGAAACAAGAAGTTGCTTATCTACTATTGT
ACTAAGGTCCTATATCATTGTGCCATGGTTTATTTACTATTTCCTCCAAA
CTGCAGGAAATGATTGATGAAAATGATCAAGAATTACAAGAATTGAGAAA
TCAATGGGGGGACGCAGCTTATGAATCTGTAGTGAAGGCATTGTTGGAGC
TGAACGAATATAATCCAAGTGGGAGGTACGTAGTTTCAGAGCTTTGGAAC
TACAAGGAATGTAGGAAAGCTACTCTAAAAGAGGTGATTGTTTGCTTAGT
CCAGCAATTGAAGTCTCTCAAGTCGCTTAAGAGGAGAAGATGATCGGTGA
TGGTATACATCACAGGGCGGGCTCTAGTATGTCAAAGTAATTGACATACA
GTAGCCGCCATAACCGAGCCTCGAGAGCACAGCTGGAATGTTGTCTAAGT
TGTAAACTAGATAATGGTGGTTGTAATCTAGATTGTAGTAGCTGTATATT
AGTGTTAACATGGTTGCTGATATGTTGGATTTTCGCTTATTAAGCTGTCT
TAGGATGTGAAACCCTGCTGTTATATTCTTTTATGAGAACTTTTTTCTTA
TACATTGACAATTTCTTGACTAGAATGTTTGATTTTACCCATTTAATAAT
GTACATGATAATTGCTAATTTCCATAACCCATTTTATATATTTACCCTAT
CGTTTTACATACATCCGTGAATGTAATATGTGAAATATAATAATTCTAAA
TGTCATGATTTCATGGAGATTACAGTGATGAAGCGGGTCCGGGTTCTTTT
TGACCCGACTAAAGCCAAGCTCCACGAGGAAGTAATAAAGAATCAAAGGT
ACAAAAAGTATAACCCATAATTTCATTTCACATAATCTTGTACTTGTATT
AACACATTTAATTTGTTGATTTGATCTGAACCCTTCATTTGTTTGTATAG
ATTGCATGAGACAAAACCCATGAACTAAAATTTGAATTTGGTGCAGAGAA
ATTTGGGTTTTTTTTTACATTGTGAAGATTACTCTGTATTAGCTCTATAT
TATACACTATTGCTTTAAGCATTTGGGATTTGCTGGTGAGTTTTCGCACA
TCGTTAGGCGGGAGTTGTATGATATGATTACACAACACGTTAAATTAAGT
TTGTGCATGACTTAAAATTGGATGTTAGTTCTGGTTTTTATACTGTTGTT
TGTATTGTGACGTGATTTTAGAGTTCTTGGAAAATGAAGCATGAGTTCTT
GATATAAACTTCTGATATGTTAGGTTGTTTCATTTTAATGCAGATGTAAA
TTGTCGTGTCATGGGTAAGATATATTTATGCTTCTGAAAAAGAAGTTCTT
TGTGTTGTTTTTTGGTGTCTCTTCAGGTATATATGCAGATGGCAACTTGC
GAACATTACGAGGAGTGTTGTAAAGCGCGAGCCCTCGTTGTCCAGTTTGC
AAGGGAGATTGATTACAAAAATGAGAAATTGTTTGAAATGGAGCGCAGGA
TGGACGAGAGAGAAAAGGAGTTTCAAGCATATAAGGAAGGTACAATTACT
AGAGAAGGATAATATACTTTGACATTGAAAAGCAGTATTATCATATTTGC
TTTGATTTTATTTTTCATTACAGGATTTGGGGTTTCATTAAGTTGGCAGT
AAGCTAGAAATAATTTGATAAAAAATTATCAGGATAGAATAGACGTTGTA
GTACCTCGGAGGTTAAAACACAAATAGAATTATTTCAGTTTTAAGAAATT
CTGGATATAGAATATCTTTTGTAGCAACACTGTGCACTCCACGGATTAGT
TCATATATAGTGTATGTATGTGCTTAAGTATAAATTAACAACAGATTCAT
CGCATATCTAGTATCCCATGATAGTGAATATATTTTTTTTTTTTTTTTTT
GAAGAATGATAGTGAATATATTAAATGTTCATTGAGGTTATCCAATTGGA
AAACATAGTTTGCTTTATAATACTGTTACTGTGCTTGCCTCGTGATTTAT
TCAAATGTTTTGTCTATCCATTAAACAAGAAAATGAGAGGCTGAAGGATA
AAATGGAGTTACTGAAGAAAGAGGTTGAAAAGCTAGTAAAGGTTCTTGAG
GAAACTCAATACAAATCTCTCCTAGAGCAAAAAAAATTATTGGCAAAGAA
TGAAAAGTTGAAGTATGAATTTGAGTCTCAAAAGAAATTGTGTGGGAGAC
TAGATGCAGATTTGAAAGAGCAAGGATATGACCTGATGGTACAAAAAAGT
TCGTTGATTAACAGAGAAAAATTGATTTTTGAAAGGGAATGTCAACTAAA
CAAGCGAATTAAGATGTTGCAAGAGACAGAGGACAGACAGGTGCTGAAGG
ACACGAGTATAATGAGAAAGGAACAGAAGGTATGTGTTGTTTTCAACTGA
GAAATATCAATATATCCCTAGAAAAAGTGACCTGTTTATCAATTTATATG
TAATGCTCCCTAAATTCCCAACTAGATGATCAATGCTCACCTTTTAACAA
AAGGCTATTCAAACAATTTTATTTGTAAAATTAATATAATTTCCTTTAAG
ATTTGTTTTATTTGATATGATCATTGTAACTTTTAACTCATAAGGTTATA
TATCTGTACTATTTGTAGTTAGCTTTTAGGTTTTTTTTACATACTTTGAA
TGTGCTAATTCAATCTTTAAACTTGATTTTTCAATTAAATTTTGGAAGGC
AACAGTGGTCACCGATTTTATAATTGAGTAAGAAAATTTAATGTTTGACT
ATTATGTCTGAGTTCTCTGCAATTTAAACTTATCATGTTAATGCAAACTG
CTACATGTTAAATTGGTGGCCAGTTTTAGTACTAGAATGGCGAGCTGGAT
GGTACATTTTGTGTCTAATGCTTTATTTTACAATGTGAATCACCGGTGAT
TGCTAAGACTGTCAGAACTCCAGTGGTAATTACATCACTGACATCAAGTT
TTACACTGCCATTGTGTCATTCCACAACTGCATCGACCGGAAATATTTAA
TATTTTTAGTGGTTGCCTGAGGGTTGTAGTGATTTTGTGAGCCAATGTAG
TTGGAGATGATTAGCATGACAAGGTGTTTGGATTGATGCAGGCCCCGATG
GTTGCTCATTATGTAGTGGACCAGCAGCCTTTGCAGTTGATAAAGGTATT
CACATTATTCCTTAGCAATAATAACTGTTGGGCTTTCGTTGGAAATGTTT
ATTTTGGGAACTGGGAACTTCTCCAAGGTACCAATTTTCTTAAATGTTTA
CAAAATTAACTGTACGCTTGAAGGTAGATGACATATTTACTATCTTGTCA
AGAAATTTCTCAAAATAGAATTTACAGTGCTACAGTAATGTTGCAGAGAG
CCTTTTTTATAAGAATTTGAATAATTTGTCTACTTGATAAAAATTAGCTT
GGCCAATACAAATGCTGTACCAAAAATTCTTTTAGCAGAGGAAGATAAAA
TTCATCCTCGCACAGGGAAATTAAAAAACCTTCAGTCAAGAAAATAATTG
CTTTTTCTAGATCCACAAAAGACAATCTCCTCTTTGTTTATCCATGAAAA
CAAATGCGTAAAGTGTTAATTATCATATCAACCAAAGAATCTCAAGTAGA
GCTATGTAATGCATCCGCAAACAATCTTTGTAGAAACGAAAAAACTTTGA
GGTTCAACTTTAACAATTTCCTTGTTCCTGTACATATTATAGTATTAGTG
ATATGGTGTTGTCAGAGTCTTGATTTCTTTCTGAATACCAGGAACAATTA
ATTGGTCACATATTTCATAATATTTTACTGCTTAGTTACAAAGCTTTGAG
TAGAACCATTTCAGCTTTCCATTCCATCAATTCTTGTTGTGGCCAAAAAT
ATCAAGTTAGGTGATTGCCTTCCACAGTGATACCCATGAAAATGGATTTC
GTTGCTGTCAGGGACTAACTGAAACCTTATAAGGCTTTGTTTGCTTTATT
GAATTAAATTCCTGGATGATATAAATATTTGATCTAGATTCATTATGTAT
ATATCTCTAATATTAATTCATTATCATATGGGATGATAATACCTAGGAAG
TGGGTGAAATTACTAGTGCCCCTTAAATGAATCAGAAAGTGTCTAAAAAA
TAGTATGCATGTAGGATTATTTTAGAGAATTATGACAAAATAAGTGAAAA
TGTGGAATAACTCAGGGATTTATAATCCTTGCAAACAAGCATAGCATAGA
ACTTCAGTTGAGTCTGAATGTTTAAACCTAAGGTCTGAATTTTTAATTTT
GAAACTGCATATAGTGAAAAATAAAAGAGTACAGTGGATAGGGTAAGAGC
TGGAAACTAAAAAAAACTTAAGGACAGAATGAAAATATTAAAAACTTAAG
CTTACTGCTCATACTGTTTAAATCTTACATAGTTATATAATTTCCGGGTG
CAAGTTGCATTTTGTAAATATAGAAAGCCATAAATTTATTGGACGCAGTG
CAACTTTTGGATTTCTGGTTGTTTAAATTAAATACTAGCCAGGGAAGATA
AATGTCATCTTAAGGGTATTGTACAGAAGAGTCTGGTTAAAGAGCGTTTG
TATTTACTGTATATTGTCATTATTAATCTACTCATATATCTCTGTATTTT
TATTTTTGCTATAATCTACTCATTTGTTCATTGCATCTCTTTTTCATTTC
ACCTCTGCGTTCAGTTTTCTATCTGTATTCTTCACCACAACTTTTCAAAT
CAAGGGGATTCAAACAATATGATTGATCTGCAGGTAGAAGATCCTAGCTG
TAACAGAAGTGATGATACATATGCACCTGGTAAAGATGCAGAGGAGAAAC
TTAGAAAAGAACTGGAATACTTTGAAAGCCTTAATAAAACTTTGATGATC
AAGGAGTCCATGAGTAACCGTGAGCTGCAAGATGCCCGCAATGAAGTGAT
AGAGGTATGTTTGCTTCTCTTCTCTTCTCTTTTTACTTCCTTCCTTGGCA
CTGCTAGTGCACTTCCCAGTTGCAGCATTTTTTATTAGCTAAATTCTGTC
TTTTGACATGTCATTGATCCTGGTCTATCTCTACAAGGGTTTGGAAGGTA
TGCTAAATCCTCGTTCAGTATTTTGTATCAAAAGAATGGGGGAGGTTAAT
CGAAAAGTTTTCCAAGAAATATGCCAGCAGAGCTGCACTGCTGAAGATTG
GGAAGAGCAGTCTGCAACACTATGTTCACTTTGGGAACGTCGTGTTCGGG
ATGCACATTGGCATCCTTTCAAAAGAGTAACCATTGATGGGAAACTGCAG
GTACATGTGTATGTAAACCATTAACATCATTATATTGTTTGTGTCATCCT
CGTTATGTTATTCTTTAACTTGTTGATTATATAGACTTCTTCCAGGTGGA
ATTAA

Sequence Length:

10005

Sequence Checksum:

5ead7a13c1c898fc65b309ac2b5a6b1a

View location in JBrowse:

DCARv2_Chr3:39521464..39531468+

Cds:

>DCAR_011713cds ATGGAGAAAGATTTGGTAGAAGAACTAAAACAGGCTCGTAGACTAGTTGT GAGCTTAGCGAAAGAGGTTGATTTCAAGAATCAGAAGCTTTGGGAATTGG AGCGCAAGTTCAATGAGGCTTCTACTGCTTTGGGGAGAATGGTTGCTGAG AAAGATAAGCTCCATGAATCTTTTGCTGAAGAGATGAGGAAGATGCAGTT CATTGAGCAAAAAAGTGAACAGCTGAAATATGAATCAGAGTGTAAAATAA AGAAGATTCAATCAAATGGGGTAGAAAATGAAAAGCTGATACAAGATTTG TTCTATAAACAGAAAGAACTTGAGCAGCAAAAATCAGAATTGGATAAGCG AGAAGCGGAATTTGAAGTCGAGCGTAAAAAATTTCTGGCCGAAAAGGAAA AGCTGAAATCTCAAGTTCCTCTTGAGGGTGACTATAACATGACATTCCAG ATAGAGGATCTAATGTCAGAGTTGGCCGAAAAGACTGAGGAATTGAATGA TATGGAAGTTCTAAACCAAACTCTTATTATGAAAGAGCACATGAGCAATG ATCAGTTACAGGAGGCGCGCAAAGAATTATTAAATGTTTTACCAGATCTT ACAGATAGTTCTGTAGTTGGAGTCAAGAGGATGGGAGAGGTTAATCAAAA ACCCTTTCAAGACGCGTGCTTGCAGAAATTCTCAATTGAAGAAGCAGAGA TGAGAGCTATGGAGCTAAGCTCATTATGGCAGATCAAGGTCAATAATTCA AACTGGCATCCTTTTAAGCAAGTCTTTAAAGATGAGAAGTTGCAGGTATA TATGCAGATGGCAACTTGCGAACATTACGAGGAGTGTTGTAAAGCGCGAG CCCTCGTTGTCCAGTTTGCAAGGGAGATTGATTACAAAAATGAGAAATTG TTTGAAATGGAGCGCAGGATGGACGAGAGAGAAAAGGAGTTTCAAGCATA TAAGGAAGAAAATGAGAGGCTGAAGGATAAAATGGAGTTACTGAAGAAAG AGGTTGAAAAGCTAGTAAAGGTTCTTGAGGAAACTCAATACAAATCTCTC CTAGAGCAAAAAAAATTATTGGCAAAGAATGAAAAGTTGAAGTATGAATT TGAGTCTCAAAAGAAATTGTGTGGGAGACTAGATGCAGATTTGAAAGAGC AAGGATATGACCTGATGGTACAAAAAAGTTCGTTGATTAACAGAGAAAAA TTGATTTTTGAAAGGGAATGTCAACTAAACAAGCGAATTAAGATGTTGCA AGAGACAGAGGACAGACAGGTGCTGAAGGACACGAGTATAATGAGAAAGG AACAGAAGGTAGAAGATCCTAGCTGTAACAGAAGTGATGATACATATGCA CCTGGTAAAGATGCAGAGGAGAAACTTAGAAAAGAACTGGAATACTTTGA AAGCCTTAATAAAACTTTGATGATCAAGGAGTCCATGAGTAACCGTGAGC TGCAAGATGCCCGCAATGAAGTGATAGAGGGTTTGGAAGGTATGCTAAAT CCTCGTTCAGTATTTTGTATCAAAAGAATGGGGGAGGTTAATCGAAAAGT TTTCCAAGAAATATGCCAGCAGAGCTGCACTGCTGAAGATTGGGAAGAGC AGTCTGCAACACTATGTTCACTTTGGGAACGTCGTGTTCGGGATGCACAT TGGCATCCTTTCAAAAGAGTAACCATTGATGGGAAACTGCAGACTTCTTC CAGGTGGAATTAA

Pep:

>DCAR_011713pep MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAE KDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDL FYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQ IEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDL TDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNS NWHPFKQVFKDEKLQVYMQMATCEHYEECCKARALVVQFAREIDYKNEKL FEMERRMDEREKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSL LEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSLINREK LIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYA PGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLN PRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAH WHPFKRVTIDGKLQTSSRWN*