Resource Type:
Gene
Organism:
Name:
DCAR_011960
Identifier:
DCAR_011960.gene
Locus Tag:
DCAR_011960
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_011960, is a part of gene, DCAR_011960. |
| The genetic_marker, MK003783 K1227, is located in gene, DCAR_011960. |
| The genetic_marker, MK017720 3_42432171, is located in gene, DCAR_011960. |
| The genetic_marker, MK017724 3_42434679, is located in gene, DCAR_011960. |
| The genetic_marker, MK017722 3_42435452, is located in gene, DCAR_011960. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_011960 | DCAR_011960.mRNA | mRNA | DCARv2_Chr3:42424886..42435503 |
Sequence:
CGACATCCTATCATAAATTCGTAGACAATTCTCACTCAATTCTTAATCCA
TTTTTAATTAATTAAATCCTAGCTCCTTTTTTTTCCAACTTAATAATATA
TATAATAGAAGTATAGAAGTATATATATAATAGAAGTATGTTTTAAATAT
CAAATTATCCATTAACCCCCTCTTAACATCCCTCTACCGCCTGAATCCTT
GACCCAAACAAAAGTCAAAGCACGAATCCACACGAGTTAACCCAACCCCA
AAACATCCTTTCCCTAGATACCCCTCCACCTCAACCCCACTTCAACCCAA
TCACCCCCAAAACCAAGGGCAAACTCGTCATTTCAGCTCAAAAGCCAACA
CATCTCCGATCATAACACTGGGCGCCTCGTCGCACCTCCAACTCGAATTC
ACACAACACAGATCTCTCGATTCTTCAATATCCTCGATTTCGCAACATTA
CATACACACACAATCAGGTATCAATCTATACGTATATGAGCGTGTATGTA
TATGTCTCGTATTCAATTCGTTTGATTGAGTTGAAGTATTGATTAATTAA
TTGATTGATTATTATTCGATTGATTCGATTCGATTTGTTCGTGTTTCTAG
GGTTTTAGTTAGTTACGTTATGTGCCTTTGTGTGTTGCGTCGTAGCTGAA
GCTGAATTGTGCTCTGTGATGATGTTGATTTGATTTCTAGGGTTTTGTTT
TTGATTTAATCGATTTTGATTGTAAATTTGTGAGTTAGCTGAAATCGAGG
TTGTAAGTGTGTAATTGGAGTTGAAATTGGCGGGGTGAGGAGGTTTATGT
CTATGGATTGCTTGTTTGATTCGGTGATGGATGGGTGAATGTGGAGGAGC
TCGAGGAGGTGTTGATTTGTAGTGTGGCTGTTCGGTGTGGGATACAGATG
TTTTTTCAAGCTGAATTGAAGTAGAGATGGGCGTGGATATAAAAAGGAAA
GGATGTTGATAGATTTGATTGTTATTATGAGTTGTATATTTTTAATGTGT
AGCTGTTTCCGTCGTATATATGAAATATTATTTGCTGTTTGTATAAAAGT
CTGTTCTGCTGAAGTTGAATTGAATTAACGGGCTTAGTCTTCTTTACACT
ATAGAATGATGTGGGAGTATAGACTGTGGAGCTCTGAATGAAGCTCCATA
TTGGGTAATAGATTTGTAGAGATAGTTTTTTGTTCTTGTTAAAATTATCA
CGATGACTGTTAGAAAATTTGTTGTCTTTGCTTAGGATGTTAACATCGAG
CTGGGTGTTCATCGATCAAAAAACTGAATTAGAATATCCGGGATCATGGT
AGTTAAGCGCAGGTAGAGATAGCAGTAATTAATTATATTCAGATTTGGAT
ATTGGCAATCTTGTTAAAATACTTCATATTAAGAGGATTCGTTAGCCTGG
TTAGGAGAACTCTAAGCAAAGTTATTGTTAATTCATTGGGCTTAGTATTA
TGAACTCTGTAGAAGGATCTAATACAAGTTTTCTTCCATTTATAGCAGGT
TTACATGGTTGAATTTGTAAAATTATTAGATGTATGGTTTTCTGTTTTAT
GATAATTAAGCGTTACCCTGGAGAATTTAATTTAAGGATTAGCATGTGTA
TTTTACATAGAATTCTTCATCTTGGACATCTTGCTTGACTTTTGTAATTT
TGTATACATCTGTGACGTCATCTGTGCTAATATATACAGAAAGTTGTTGA
ATTTTTATGAATCATATACTGCAGGTTGTTCGTACTGATCTTGCTAGTTT
TTATAGTATGGTACATAAGGTTTAACACAAAGTTAGAATTTTCTGTCTTC
ATTTTTATTCAAGTGAGGAACGAGTAAGCTTACTAGGGTGGGGTAAATAA
CCCACAGCGAAAGGCTAACTGAAAATTAAAACACTAAGGTTTGTGCCCGC
ATCTAGTACAAATAAATATCAGGCTTCCAGAATTGTCTAGAAGAGTAGAA
GTTATGACTTCCTGAGCCTGTTGCTCTTCTAGAGCCATATCTTGCTTCAG
GAAAGATTTTGGCCCCATTCTTAAATTTATTATGTATGCAGGTGCGATTA
GAGGTTGTTGTTGACAAGGATATACAGTAAACTTCCATGTCCTGCAGCAG
TACTATTGTGCGATGCACAACTGCTTTCATCTGGTCTGCAGCACAGTGAA
CGACTGGAAATTGATGCAATGGCAACATCTAATAAATTCGATTTGTCATC
TGCTAGCCCGGATAGGCCTTTGTATGCCTCTGGCCAACGCGGATCCTATA
TGGCAGCTTCCTTTGGTAGATCAAGTAGCTTTCGTGAGAATGTGGAGAAT
CCTATTTTATCATCTCTTCCAAGTATGTCAAGAAGCACCTCTTCTGTAAC
TCAAGGAGATGTTATGAGCTTCTTACAATGTTTGCGGTTTGATCCAAAAT
CAATAATCGTGGATCATAAATTAAATCGACAAGGGGAGTTCAAGCGGTTT
GCTGGTCTTGCAATTGGTCTTCAACCAGATGAATCCCCGTCTAGTTCTAC
AAAAAGCAAGGTACCTTCCTTGTCGCCTGAGGAAGTTAAACGGTTTAGGA
TTGGTTTGCGAGAAAGCACGATTAAGGCCAGGTAAATGTTTACAATTATT
TATTTTACATGAGTGATGGAGTACAGTTTACAAAGCTGCAACGCTATATA
TGTCAGGGAGCGTGTGAAGATCTTCAATGAAGGGTTATTGGTAGTGAACA
AATGTTTTCCAAGCATACCGTCAAGGAAACGATCTCGACCTGATGGAATA
TCTGGCGAGCGACCCAGTGCCTTATTTGCAAGTGATCGTTCAGCTGTGGG
GCCCGGTGTGGGTAAACTGGGTACACAAAACCATACCCTGGCCGGTGGTT
TTGAACTTGAACAACAAAAGGCAGAAGAAAGGTCCAAGAATGTAATTCCA
AATAAACGAACCAGAACATCCATGGTGGATCCAAGGGTTTGTTTATTGAA
CTTTCTGTTTTTTTTTCTTTTGCTGCTTTACTGGTTGGAATCGATTAATC
TTTCACCATGTAAATTTATTATTGCAATGACGTCAATAGTCCTTTGGCTG
CCTCAATGCTATTATATCCTTCTATCTTGATTGATTGAGGTGCTTACTAT
TTTTACAATGTACGTCTCTTGTGATTTGATAAGGCCTAAATTTTGGTTTC
AGTTAATATTCAAACTTTTAATATTAGGAATATTCTTTTTTAGGCCATTT
TTTGTGGCAGTGAGGGTGCTCTTTTTTCTTTTTTGCTAATTAATAATGTT
TTTTGTATACAATTTACTTAGGCAGTTTTTCATGGTCCATGGTTGTGCTT
TTGTTCTTGTGTATCTGTTTGATGTAAGGGCTCATTCGCTTGGTAAAGCT
GTCCAAACAAGGCTTGTTCTTTGCATTAAAAAATATTATGCATTGCAGGA
GAGAAATTAGTGCATAAAATATCTCCTTCACTAGCTTTTAAAAAAGTAGT
AAACTCTATTTTCTTTCTGATTTGTGCTTGCATGCGAACATCACATGAGC
CATCCTTCCATATCTTGTTAAGAATACTTTCTGTGTAGTTGGTTTTTTCC
CCCTTGGTCGCAGTAAATTTGTAATGATTCCATTTAACCGGCCTGACTCT
TACTCTCTGATTGATATAGATGGATGTTCGGCCAAGTACTCCTGCAAGGA
CAGCTGGTACCGCTGATAGGGATAAAGAGGGCTCAAGATTTCCAACTAAT
AGTGTAGCTCAAGGTGAAGATCAAACGCTAGCTATTGGTGTTGATGGTTG
GGAGAAGTCTAAAATGAAGAAAAAACGTTCTGTTATTAAGGCAGATATTG
CTCCAGGCTCACCAGCCACAAAAGCTATTGATGGGTACAGGGAACCAAAA
CAAGGAGTTCATCCAAGACTTCTTTCTGATGGTCGCCCAAGAACAAGTGA
TTCCTATGCTTACAGGTACCACTGCTAGCAGCTGCAAAAATATAAAATCT
ATGGACTAAGATCTATACTTAAAAAGTTTGAAACATTTGCAGATAGAATG
TGTTCGAAACCTTTATATCAGTTGAACTGTTATCATACATTTATAAGATA
TTGTAGTTGGAGTGCTAATAGTATCTGGTGGAGGTGTGTCTTTGTTTTCA
GGTCTGAATTTTCCATTTTTTGTTGCCGGATATCCAAACCCATTATATTT
GTCTACTAAATTCTAATTTTCTTTTTTTTTTTTAAAATATTATCATTTTT
AGCCTCAACAAGCGTGCTTTTTAACAAGACTGTGCTTTTTAACAAGACTG
GTTACCGGGCTTCCTTTAAGTATTGTTGTTGTCGTTATTTGTCATATAAC
TAAAGTGTGTCAGTAGTATATATGATGCAAAGAGTGGTAGATATATTTGA
TTGCCATAACTTTGAAATTTAAAAGGACGGTAGAGTACACGACAGAATTG
TGCCTGGTTTTTTTTTTATTTAGTAGTTCTTTATAGGCCTGACGACTGAC
GCATATAAACACTTTTGAGGTAGAATGATTCATCGATGATAGTATGCTCT
ACATATATACTATTCTCTGGTTGAATGTATTGATAACTACCTTGAAAGGA
CGTGAATTCACTGTGTCACCTATTAATGATTGTAGAGTTATAGGATCATT
TAGAGTGTAGGCAGAAGTTGGCGAAAAAATGCAGATGCTGTATACAATGT
GTTATTTATTACAAAGGAAGGCTACCTATTTGTAGTGGGAGGCAAACTCT
TATACGGACATAACAAATTATGCACTTACTACTCTACACTCCCGTAAAGG
CATATAAGAAATGATACACCTACTTAATACTTTCTTAATTTGGTGCATAG
ATGTGTATATGTAACTTGCTAATTGCTGTATGCGTTACTTTTCTATCTTG
GCCCTTAACGATTCAGTTACTCGATCTTCTAATTGTACAAATCAAGTACT
AATGTTTTTGATTTATAACATAAGTTATCACAATGTAATATTAATTATTT
CCTTATTGGATTTTTGAGGATCCTTATATGGGGATCATCCCCCCAAACTG
TATGTGATAATTTATTTGTGCAAGGATCCTGATCTATTATGTACATCCTG
ATGCAGGCCAGGAGGTGCTAATGGAATTGTTGTTGTAAAGGCTGATGGAA
CCTCACAGGCACAGCAGACTAGCACGGGCATGCGATCCACTGTCCCCAGG
TCTGACCAGGATAGTAGTCTTCCCCTCCAGGATAGAAGAGATCATATTAT
CAATTCAGACAAAGAAAGAGTTAATGCCAGAGTTATAAACAAGTATGGAA
ATATGTGATGCTTGCATCAATATACTTTTCTGTCGGAATAATATATACCT
TAAGCTATTGGAATGGCCATTAGCTTAGCTGTTTATTCTTGTAATTAATA
GTAAAAATGTAATTTCTCATTTATTTGACATTTATGCACTTCTTCACCCC
CTTATTTAGGGCTAATACACGGGACGAATTCAGTTCGGGCAGTCCTACAT
CAAGTGCAAAACTAAATGCAGCTACTCGTGCTCCACGGTCAAGTTCAGGT
ATTGTTCCGAAGCTGTCTCCAGTAGTTCAGAGGGCAAATGCTGCTAAAGA
TTGGGAGCTTTCTCATTGTACAAGCAAGAATTCGGGTCCAGTTGGGGCTA
GTAATCGTAAAAGAACCCCTTCAACACAGTCATCATCACCTCCAGTTGCT
CAATGGGCAAGTCATAGGCCCCAAAAGATGTCTCGCACAGCAAGAAGGAC
AAATCTTGTCCCCATTATTCCAAGTAATGATGAAACCACTTCTTTAGATA
CCATATCTGATGCTGCAGGCAGTGAAAATGGATTAGGCTTTCCAAGGCGC
GTTTCTGGCAATTCTCCTCAGCAGGCTAAACTAAAAGGGGACATTTTGCC
GACTGCTACATTAGAAAATGAGGAATCTGGCGCAGCTGAAACTAAATCTA
GTAAAAGCAAAAAATCTGATGATTTAGATGATAAATCAGGCAAAAAAATT
CAGAAACTATCACCTCTTCTTCTACCACCAAGGAAAAATAAGGTAGCTAG
TAGGGAGGATCTTGGAGATGGCATCCGGAGGCAAGGGAGAACAGGGAGAG
GTTTCACATCCACAAGGTCACTTGCACCATTAACAACTGAAAAATATGGC
AATATGGGAACTGCAAAGCAGCTTAGAAGTGCTAAACTGGGTTTCGACAA
GACAGAAAGGTTAAGATTTTTTGTTTCTTTTGTAGGCTTCGGGTTAGTAA
TAGCTGTCCTTTCTAGTCTTCGCTGGCCACATTGTCTGATGTCTTATTGT
TCAATAAATATTCCAGTAAAGCAGGCCGACCGCCATCTAGGAAACTCTCG
GACCGCAAGGCTTATACACGTCAGAAGCATACCACAGTGAACGCATCTGC
CGATTTTCTTGGTACTATTCAAATAAATGTGACTAACTTTGTGATATGTG
TTTATCTTTAATTTATAATCCCTTATTGTTTTTATCATAGTTGGTTCAGA
TGATGGGCATGAAGAGCTCTTGGCTGCTGCAAATGCTGTTACTAATCCTG
GTATGTTGGTCATTTGTTTTAACGTCATTCAGAGAAATTTTAATATGTTA
TGTTTATTAATAAACTAGTATCAGTGCAGCTCACGCCTTGTCGAGCTCGT
TTTGGCGGCAGATGGAGCCATTATTTGGTTTTATATCTGATGGGAACATG
GCCTATTTGAAAGAGCAGGTAAATTCGAAGTTTTTATGTGGTGCTATCGA
TTTAATAACTAATTAACTATCTTTGTAGCTCGAAAATGTTTCAGTTTATG
CTCCTACCTATTATCTGGATATATGAAGAAAGATGTACGGTGTAAGAGGC
TACTATGAAATATTTCGCACACAAGATTTAAACATAAATCTTGTCTGTTT
GGCGAGTTTGTGTAATAATTATAATTTACTATAAAGAGAGCTAACTCTGG
GAAGGAAACTTGTAAGGGACTGAACTCTGTGAAGGAGATTTCACCAAACT
GATCCACCCAATAGTTCACATAGATATTAGTTTCTATCTCTGTTAGACAC
TTCAGTGTTGCGATCTCCATCTCTGTAAGACATTTCATATTTTCCATTAT
ATCTCCGTTTTCAAATAGGACAGATTATGACTGTAGTATGGGATCCGAGT
CCTTTCATTTTTGTTACAGGAACATGATCCTCTAATACTCCAATTATAAA
TAAAATCCAAGGCATCTGGAGACTTACTTCTCAGGAGCAAAACTCTGGCT
TTTATAATTGTTAATCTTTTAGAATTTTTGTTATAGATGCTTGTATAAAT
TTTTTTAAGAATAGATATTTTTTTGAATGAAGAATGAATAAAATTCAGAA
TATCACACGACGATTACTTATTTGTTATTTTTGATGATTTTATATTGGTC
ATTTACCCCTAATAATGACTCCTTAATATGTCTTAAGATTAGGGCTGGCA
AAATTTGACGACTCGAAACCCAACACAACCTTGACCACAGAAGTACGAAA
AACACAAATTAGGTTCATTTTTGGGTTCACCTGAAATACCCGAACCCGTC
CTTTTTGTCTACATGTTATTTATATTCTTTATTCTTTATATATGGGATAT
ATGCATGTATTGGTCCAATGTGTTTCTAACTTTGTATACTCCTGTTTTTT
AGTTAACGGGCTTATGTATTAAGCAGCCCATCATATAATATACTTAAATT
CCTTTTTCATTTCTGACCTACCTCTTTTATTTGTTTCGACCGCATTCTCT
CTCTCTCTCTCCCCCCCCCTCATTGAACAGGGCCCTCCCTCCCCTCTCCC
CTGTTGCTCTTTCTCCCTCCCCTCGCCCTTCCCTCTTCTGTTTCTCTATC
CATCTCCTCTCCCCCTCCTCCTCCATCTTTCACTATATGTGAGATACATA
CTCTAATGGTCCAATGTAATTGATAGTATATATGGGTGTGTGACTTTGTG
TGCTTTTTAACTGATGGAAACAAGCGATCTGGTGCCACAGTTCCGATGCT
TATTGGAGAGGAAAGATAGGAGGAATTGATGGATAATTATTAATTTTTCT
TTTATTTTTGTGTATGGGTCAGATTCTACTACCTAATTTTAATTATGACT
TGGGACGAACTCTTGCCTTTTGAGAATCTTTATTAAGATTATGCTACTTG
TTTTGTATTGCTCTCTTACAGCGAGATGGAGATTCCATTCCATCAACGCC
AAATGCAGCACCATTAGGTAGCATGTTAAGCAGGGGAGTTGGCATGTTTA
AACGTGCAGGAGATATGTATGATACAATGCCTGCAGAGCTTAGCCCAGAA
GATATAGCCGCGGGAAGTGAAATCTCCCTTTGCCAAATTCTTCTTTCTGC
TCTTATTCCAGAAGATGTTACCGAAGATCCTACTGGCAGCGGAAATGAAG
AAGGGGAATTCAATATATATGAATCAGAGTATGAGCCAAATGGACAGATA
GAAACTGGTTCTTACAGCAATGGGTCAGTCCAGAACTTTGAGCTTTCTGG
ACGTGGGCGTAATGGTTGTAATGGATACGAGCTAAATTCTTGCCGGTCAT
ATGATGAGATGGAGCATGATCTTCAGTATAACAAAATGTCCTTCCATGAA
AGAGCAGTATTAGAGATCCAGAGTATTGGGCTTTCTCCGGAAAGAGTAGT
AAATATCTCTTTCTGGGATTGTTAATTTAATTTCACGTGAAATTAATGCC
TCTTAGTATGTATGAAACAAGATGCTTGTTTTGCTCATTTTTGTTTTTCA
GCCTGATTTGATCCAAACAGGGGAGGAAGAAATTAGCCGTGATATCAGCC
GACTTGAAGACAAGTACCTTGACCAGGTACCACTGGCTAGAAACTTAAAA
GCTATTAAGTCAAATAGTTAGAAAGTTATCAAAATCTCTTATCTTAGGAG
CTGGGAAAGAAGCAAATTAGATACTTGTACTAACATGCCACTTCATTTTA
CTACAATATGTTGCTTCACTAAAAAAATCCTTCTGAAGTATCACACCATA
TTGGGAAACTTTCATGAGAATTTGACTGTGAATTGTCCTGTTAAGAGAAG
ACTGGATTCCTATTCTTCGGGTAGAACAATAGATTTTCATAAATTATTAA
GTAACTAATCTTTGATCTTCTTTAGTTGTTATCCATGCATTTATTTGTGC
TTACGTTCCTTTATATGCATTGTGGCATTATTTTCAGGATCAAGTAAATA
TTTGTGGAAACTATGTTTAATCATCAGAAGATATTATATAATATAAATAA
TAAGAAAGGAATATATGATGCCCAACATTTCGAGCAAGGAAAAGATATTG
TTGCCTATATCTTTTAATTATCATGGAGCAATAAAGTTGATTGTAATTTG
TTAGGTAGGTTAATTATGTCAGAAGAGCAGGTTGCTAATATAATCTATAT
TTTAGCCTGAAATTATTGTAGTAAGAGTCACATAAGAAGTTGTTCCTATC
ATTAGTTATGGTGGTAGAATAACATTTGAATTAGGTATCAATTTAATTTA
GTCTCATTTTTAGGATATTAATTGTGCTCTCAGCATTAGGAAATCTTTAT
GAATTGTTGTAAGTTGTAACCTTCCAAATTTGTTATATTTTATTGCTACT
AACGTTTTGTCCTTTATTTGTGGGTTCTGACTATTTAGATAGGTAAACCA
TGTGGTTGAGGAAATATAATGTCTGAGGTCTCCTTCCCTCCATAACAAAT
TTGCTTAAGCATGTGCTGCAAACTAGCAATGAAGCCTTTTATTTTGGTCC
TCACTTTTTTGCTCATAGTACTTCATAGTACCAGCAAAATAGTTCTAACT
AACATAAGGTGCAAAGTATTCACTACTTAAAGTGGATTAGAGTGTTAGTT
TTGGATTACCTCTCAAGGTTTGTGACATTAAGATTAGGCTAGCTTCTGCC
TTGGTATAACCTTTCTTTTTTTGTCCTTGTGTAATATGAACTTGTTGACA
TTTAGTCCAAAACTTTTAAATAAGAGGTAGTACTTATTTATGATTTATTT
CTTAGAGTATGTTATAATTGTAGTTATTCCTACAGGTACGCAGAAAGAAA
GATATGCTTGACACACTCTCGAAGTCTGCAACAAAAGCAAGAGAGCTGCA
AGAGAAGTATTAACAATTATTCTTTCTGTTTAATATAACCTTTTCCTTAT
ATTATCATTATCTTTTAAATTGTCGAAACATCAGGGCTCCAGGACTAAAA
CCTTTTATGTTATGTAGGGGGTTCCAGCAAGCTGCTCTTGACAAACTCGT
TGGAATGGCTTATCAAAAATACATGGTATTATGAACATCATTACTCCTTA
ACTCATCTGTTATTCCAAAATTTAATATTTTAGGGTATGCATTTTGTTGT
ATTGTTGGTTCCTAAGTCTTGTACACTTAATAGGGTGAGCAAGAGGGATG
TTAATTTATTGTTGGTGAAGAAATAGTTATTATAATTCATGATAATGATC
ATACAATTACCTCAATAAGTTCTTAAAGCGGAAGTGACCTACATATTTTT
CTGCAACACGTGTCAATATCTTACAAGATGGCTGTCAGTAAAATCTTTTT
TCTCTTTTCTGCATGCATTTCATAGTTTTATCTGCCACAAATAACCCTAG
GATATGTTAGTACAATTCACTTTGACATTGTTAGTGATGTATTCTGATCA
TAAATATGTATTGTATGTATTATTCTGAACTGTGAAATGTTTAGACATTA
GCATGTTGTATGAAATTAATAAAACACCGTTTAACCTGCAAAAATCTTAT
ATTTTCTTGTATGTGCTGTGCATATATAACTGATGATGTTTAGTTGCTTT
TCTTATTTAATCAGAATTGATAAAAAATATGACTTTAGTAGTATTTTTGA
AGTTTGATATATGCACTTCTAATTATTTGTCACCAAAGTTTGATGCATGT
TATATGGTTGTACAAAACTATTAGTATAATCTGTGCCCAAACTTTATATT
TGAAATGTGCGGATCGATCAAATCGCGATTTCTGTTATTCTTCAGCACCT
AATTTAGAAAAACCAGATGCCCTTTTGCACTGGTATTTTACTTACTCTTA
TCAATCATTAATCATCTAGTTATTGATTATCGCACCCTTCCTGTTGCTTT
AACTTTGACCAAATTACAAATATATTAATTTTATATTATATATCTAAAAA
AATTCGTTTGTCTATTCAGTATCCATTAATAAGAAATTTTGATACAACTA
TATTATAAGTCTATCTAATAAAAACAATAATTTGTTATTAGGAAAGATCT
GGAACATAGTTGCAAAAGTTAAACAGTAATGAGTAATGACTTGAAAAAGT
TTATCACAGTAATTTTTTTATTTTTTTTGGATTATTGAGGCAGGTGTTTA
GAAGTGAACCATTCAGTCTTGTATAAATGAAATGACCTGAATATATTAAT
TGCTTAAAAAAGTGTACATTATGCTATATTCCTTCTAAACTAATGGCCTG
TCATGGCCCCTGGGCGCTTTTGCTGTGAGTAAATTTGTGCTTTACTGAGC
TTAATACATGAAGACATGCACAGAGAGAGGGAGGGAGACATCCACTATTA
GCTACAATATTTTCCCTATGTTTTACAGGAGAAAAAAGAAATAGCTGACT
CCACTATTTGATATATAAAGGAATATATGTGTAAATAATGTATCTAAACC
TTTGGTTTACTTTGATTTATTTTATGGGCAGCACATTGATAATATTTATT
TCACAGAGTTGCTGGGGCCCAAATGCCCCTGGCGGGAAGAGTGCCAGCGG
CAAAATGGCCAAGCAAGCTGCTTTAGCGTTTGTCAAACGGACCCTGGACC
GGTGCCAGCAATTCGAAATTACCGGCAACAGTTGCTTCAGTGAGCCTTTA
TTCAGTGAAATGTTCCTCTCTAGGTTGTCCCAGTTCAGTGATGCTCAACA
ATTAGCTGCCAGCACAGATGGTGAATCTGGAAAACTTTATTGTATGGACG
CTAGAGCTTCAGGTAATGTATCTTATTCATGAATCAGTGATAAGTTTGAA
AACACCAATATATTCATGTATGTTTTGTCCAAGACAAAAAAGTTCCTGTT
CCTGTATGAAATACAACAGTACGTTTGTTATTCATTTTGGTGGACTTCTC
ATAATGTGCTACATATCTGTTATATAGCCTTTGTAGGTCCTAATTTCCCT
ATCTTTTTCAGCTTCGGTAGGTGTACAGTCACAGCAAAGTCCTTCATTAA
GCAACAACGATATGTATTCTTTTGGTCCACTCTCATCTATGAACAGCCCG
GCTGAGAGAACTATTGGAAATGAAGATACATGGTCAAATAGAGTGAAAGA
GAGGGAGTTGTTACTTGATGATGTTGTTGGGGGTGTTGTCAGAACATCCC
TTTCAAGTAATGCCAAGGGAAAGAGGAGTGATAGAGACAGAGAAGGGAAG
GGGAACAACAGAGATTTTTCATCAAGAAGTGGAACCACTAAAATTGGTCG
GCCAACATCTGGTAATGTCAAGGGGGAGAGGAAATATAAGTCAAAGCCTA
AACAGAAAACCACTCAACTATCTGCTGTTAATGGGCTCATTGCAAAAGTT
TCCGAGCAGCCAAAAGCAGGATTGTCTTCAATGCCAACTTCCGGTAGCAT
GCGTACAAATACTGACAAGGAAAAGAATAACTTTAACCTGGATATGTTGG
GAACCTCCGAGCCCATTGATTTATCCAACATGGATGCCCTGGATGTTCCT
GATGATCTTGGCGATCAAGGGGAGGACATTGATTCATGGTTTGGTATTGA
TGATGATGGTGGGTTGCAAGATAATGATTTTATGGGCCTTGAAATACCAA
TGGATGATTTATCTGAATTAAACATGATGGTGTGAAGTTCCATTGTTGTA
AAGACCAGTTCATTATACAGATTTACAGAGGAGACATTATCGCTGTTGTA
ACTTGTAAGAAGTGACCACATACACAGAAGGTCATGTTACTTCCCAATCT
ATAATTAGGCAACAGATTCTTTCAGGAACACCACATGAGTTGATCTTCGA
TTGAGC
Sequence Length:
12956
Sequence Checksum:
d9baf1533c3d06592e30f208fda0a2f1
View location in JBrowse:
Cds:
>DCAR_011960cds ATGGCAACATCTAATAAATTCGATTTGTCATCTGCTAGCCCGGATAGGCC TTTGTATGCCTCTGGCCAACGCGGATCCTATATGGCAGCTTCCTTTGGTA GATCAAGTAGCTTTCGTGAGAATGTGGAGAATCCTATTTTATCATCTCTT CCAAGTATGTCAAGAAGCACCTCTTCTGTAACTCAAGGAGATGTTATGAG CTTCTTACAATGTTTGCGGTTTGATCCAAAATCAATAATCGTGGATCATA AATTAAATCGACAAGGGGAGTTCAAGCGGTTTGCTGGTCTTGCAATTGGT CTTCAACCAGATGAATCCCCGTCTAGTTCTACAAAAAGCAAGGTACCTTC CTTGTCGCCTGAGGAAGTTAAACGGTTTAGGATTGGTTTGCGAGAAAGCA CGATTAAGGCCAGGGAGCGTGTGAAGATCTTCAATGAAGGGTTATTGGTA GTGAACAAATGTTTTCCAAGCATACCGTCAAGGAAACGATCTCGACCTGA TGGAATATCTGGCGAGCGACCCAGTGCCTTATTTGCAAGTGATCGTTCAG CTGTGGGGCCCGGTGTGGGTAAACTGGGTACACAAAACCATACCCTGGCC GGTGGTTTTGAACTTGAACAACAAAAGGCAGAAGAAAGGTCCAAGAATGT AATTCCAAATAAACGAACCAGAACATCCATGGTGGATCCAAGGATGGATG TTCGGCCAAGTACTCCTGCAAGGACAGCTGGTACCGCTGATAGGGATAAA GAGGGCTCAAGATTTCCAACTAATAGTGTAGCTCAAGGTGAAGATCAAAC GCTAGCTATTGGTGTTGATGGTTGGGAGAAGTCTAAAATGAAGAAAAAAC GTTCTGTTATTAAGGCAGATATTGCTCCAGGCTCACCAGCCACAAAAGCT ATTGATGGGTACAGGGAACCAAAACAAGGAGTTCATCCAAGACTTCTTTC TGATGGTCGCCCAAGAACAAGTGATTCCTATGCTTACAGGCCAGGAGGTG CTAATGGAATTGTTGTTGTAAAGGCTGATGGAACCTCACAGGCACAGCAG ACTAGCACGGGCATGCGATCCACTGTCCCCAGGTCTGACCAGGATAGTAG TCTTCCCCTCCAGGATAGAAGAGATCATATTATCAATTCAGACAAAGAAA GAGTTAATGCCAGAGTTATAAACAAGGCTAATACACGGGACGAATTCAGT TCGGGCAGTCCTACATCAAGTGCAAAACTAAATGCAGCTACTCGTGCTCC ACGGTCAAGTTCAGGTATTGTTCCGAAGCTGTCTCCAGTAGTTCAGAGGG CAAATGCTGCTAAAGATTGGGAGCTTTCTCATTGTACAAGCAAGAATTCG GGTCCAGTTGGGGCTAGTAATCGTAAAAGAACCCCTTCAACACAGTCATC ATCACCTCCAGTTGCTCAATGGGCAAGTCATAGGCCCCAAAAGATGTCTC GCACAGCAAGAAGGACAAATCTTGTCCCCATTATTCCAAGTAATGATGAA ACCACTTCTTTAGATACCATATCTGATGCTGCAGGCAGTGAAAATGGATT AGGCTTTCCAAGGCGCGTTTCTGGCAATTCTCCTCAGCAGGCTAAACTAA AAGGGGACATTTTGCCGACTGCTACATTAGAAAATGAGGAATCTGGCGCA GCTGAAACTAAATCTAGTAAAAGCAAAAAATCTGATGATTTAGATGATAA ATCAGGCAAAAAAATTCAGAAACTATCACCTCTTCTTCTACCACCAAGGA AAAATAAGGTAGCTAGTAGGGAGGATCTTGGAGATGGCATCCGGAGGCAA GGGAGAACAGGGAGAGGTTTCACATCCACAAGGTCACTTGCACCATTAAC AACTGAAAAATATGGCAATATGGGAACTGCAAAGCAGCTTAGAAGTGCTA AACTGGGTTTCGACAAGACAGAAAGTAAAGCAGGCCGACCGCCATCTAGG AAACTCTCGGACCGCAAGGCTTATACACGTCAGAAGCATACCACAGTGAA CGCATCTGCCGATTTTCTTGTTGGTTCAGATGATGGGCATGAAGAGCTCT TGGCTGCTGCAAATGCTGTTACTAATCCTGCTCACGCCTTGTCGAGCTCG TTTTGGCGGCAGATGGAGCCATTATTTGGTTTTATATCTGATGGGAACAT GGCCTATTTGAAAGAGCAGCGAGATGGAGATTCCATTCCATCAACGCCAA ATGCAGCACCATTAGGTAGCATGTTAAGCAGGGGAGTTGGCATGTTTAAA CGTGCAGGAGATATGTATGATACAATGCCTGCAGAGCTTAGCCCAGAAGA TATAGCCGCGGGAAGTGAAATCTCCCTTTGCCAAATTCTTCTTTCTGCTC TTATTCCAGAAGATGTTACCGAAGATCCTACTGGCAGCGGAAATGAAGAA GGGGAATTCAATATATATGAATCAGAGTATGAGCCAAATGGACAGATAGA AACTGGTTCTTACAGCAATGGGTCAGTCCAGAACTTTGAGCTTTCTGGAC GTGGGCGTAATGGTTGTAATGGATACGAGCTAAATTCTTGCCGGTCATAT GATGAGATGGAGCATGATCTTCAGTATAACAAAATGTCCTTCCATGAAAG AGCAGTATTAGAGATCCAGAGTATTGGGCTTTCTCCGGAAAGAGTACCTG ATTTGATCCAAACAGGGGAGGAAGAAATTAGCCGTGATATCAGCCGACTT GAAGACAAGTACCTTGACCAGGTACGCAGAAAGAAAGATATGCTTGACAC ACTCTCGAAGTCTGCAACAAAAGCAAGAGAGCTGCAAGAGAAGGGGTTCC AGCAAGCTGCTCTTGACAAACTCGTTGGAATGGCTTATCAAAAATACATG AGTTGCTGGGGCCCAAATGCCCCTGGCGGGAAGAGTGCCAGCGGCAAAAT GGCCAAGCAAGCTGCTTTAGCGTTTGTCAAACGGACCCTGGACCGGTGCC AGCAATTCGAAATTACCGGCAACAGTTGCTTCAGTGAGCCTTTATTCAGT GAAATGTTCCTCTCTAGGTTGTCCCAGTTCAGTGATGCTCAACAATTAGC TGCCAGCACAGATGGTGAATCTGGAAAACTTTATTGTATGGACGCTAGAG CTTCAGCTTCGGTAGGTGTACAGTCACAGCAAAGTCCTTCATTAAGCAAC AACGATATGTATTCTTTTGGTCCACTCTCATCTATGAACAGCCCGGCTGA GAGAACTATTGGAAATGAAGATACATGGTCAAATAGAGTGAAAGAGAGGG AGTTGTTACTTGATGATGTTGTTGGGGGTGTTGTCAGAACATCCCTTTCA AGTAATGCCAAGGGAAAGAGGAGTGATAGAGACAGAGAAGGGAAGGGGAA CAACAGAGATTTTTCATCAAGAAGTGGAACCACTAAAATTGGTCGGCCAA CATCTGGTAATGTCAAGGGGGAGAGGAAATATAAGTCAAAGCCTAAACAG AAAACCACTCAACTATCTGCTGTTAATGGGCTCATTGCAAAAGTTTCCGA GCAGCCAAAAGCAGGATTGTCTTCAATGCCAACTTCCGGTAGCATGCGTA CAAATACTGACAAGGAAAAGAATAACTTTAACCTGGATATGTTGGGAACC TCCGAGCCCATTGATTTATCCAACATGGATGCCCTGGATGTTCCTGATGA TCTTGGCGATCAAGGGGAGGACATTGATTCATGGTTTGGTATTGATGATG ATGGTGGGTTGCAAGATAATGATTTTATGGGCCTTGAAATACCAATGGAT GATTTATCTGAATTAAACATGATGGTGTGA
Pep:
>DCAR_011960pep MATSNKFDLSSASPDRPLYASGQRGSYMAASFGRSSSFRENVENPILSSL PSMSRSTSSVTQGDVMSFLQCLRFDPKSIIVDHKLNRQGEFKRFAGLAIG LQPDESPSSSTKSKVPSLSPEEVKRFRIGLRESTIKARERVKIFNEGLLV VNKCFPSIPSRKRSRPDGISGERPSALFASDRSAVGPGVGKLGTQNHTLA GGFELEQQKAEERSKNVIPNKRTRTSMVDPRMDVRPSTPARTAGTADRDK EGSRFPTNSVAQGEDQTLAIGVDGWEKSKMKKKRSVIKADIAPGSPATKA IDGYREPKQGVHPRLLSDGRPRTSDSYAYRPGGANGIVVVKADGTSQAQQ TSTGMRSTVPRSDQDSSLPLQDRRDHIINSDKERVNARVINKANTRDEFS SGSPTSSAKLNAATRAPRSSSGIVPKLSPVVQRANAAKDWELSHCTSKNS GPVGASNRKRTPSTQSSSPPVAQWASHRPQKMSRTARRTNLVPIIPSNDE TTSLDTISDAAGSENGLGFPRRVSGNSPQQAKLKGDILPTATLENEESGA AETKSSKSKKSDDLDDKSGKKIQKLSPLLLPPRKNKVASREDLGDGIRRQ GRTGRGFTSTRSLAPLTTEKYGNMGTAKQLRSAKLGFDKTESKAGRPPSR KLSDRKAYTRQKHTTVNASADFLVGSDDGHEELLAAANAVTNPAHALSSS FWRQMEPLFGFISDGNMAYLKEQRDGDSIPSTPNAAPLGSMLSRGVGMFK RAGDMYDTMPAELSPEDIAAGSEISLCQILLSALIPEDVTEDPTGSGNEE GEFNIYESEYEPNGQIETGSYSNGSVQNFELSGRGRNGCNGYELNSCRSY DEMEHDLQYNKMSFHERAVLEIQSIGLSPERVPDLIQTGEEEISRDISRL EDKYLDQVRRKKDMLDTLSKSATKARELQEKGFQQAALDKLVGMAYQKYM SCWGPNAPGGKSASGKMAKQAALAFVKRTLDRCQQFEITGNSCFSEPLFS EMFLSRLSQFSDAQQLAASTDGESGKLYCMDARASASVGVQSQQSPSLSN NDMYSFGPLSSMNSPAERTIGNEDTWSNRVKERELLLDDVVGGVVRTSLS SNAKGKRSDRDREGKGNNRDFSSRSGTTKIGRPTSGNVKGERKYKSKPKQ KTTQLSAVNGLIAKVSEQPKAGLSSMPTSGSMRTNTDKEKNNFNLDMLGT SEPIDLSNMDALDVPDDLGDQGEDIDSWFGIDDDGGLQDNDFMGLEIPMD DLSELNMMV*