| NCBI Gene |  |
|---|
| Relationships |
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| The mRNA, XM_017395745.1, is a part of gene, LOC108221891. |
| The genetic_marker, MK002750 K0194, is located in gene, LOC108221891. |
| The mRNA, XM_017395746.1, is a part of gene, LOC108221891. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017395745.1 | XM_017395745.1 | mRNA | DCARv2_Chr5:17103251..17111629 |
| XM_017395746.1 | XM_017395746.1 | mRNA | DCARv2_Chr5:17103251..17111629 |
ATTTACTCAAAACTAAAAGAGAAAAGTGAAAGAGGCAAATAGAAAGGCAA
AAAGGGAGGGGTCGTCGGCGGCCTCTTGTCCTCGCCGACCAACTTATACT
ATCACTTTCACCACCACCCCCTCCCATCTTCATCCCCACTTTTCTAATAT
ATACGCACAACACATATACTCTACTTAGGAATTAGAGTATATGTGTTGAT
TTCCTATATCATACCTTTCATTTCAACTAATTGTTTTTTTTTATGATCAC
TTGAAAAGATCAGAGCCATGAATCACGATGAAGCTGCTGTTGTTGATAAT
ACAAATACTAACAGTAACAGTAAGAATAAGAAGAAGAAGCGTCGATCTAA
CCGGAAATCCAAACACAGTTCAGGTAGTCTATTCTTTTCCTATTTTCTTA
TTTTATTTATCTGCAGAATTGCAACTTATGAACGAAATTCAGCCTGTTAT
TTGCGTTTTGCTTCTCTCTCAATGTAGTATTCCTCTTGCAAAAACGTTTA
TCTGCTACACATGCTTACAATTCCGTATAAATACCCTCAATTTCTCAATG
TAGTTATGTACAAGTGGCACAGATACCCCCGGGCCGTGTTTGTGTGGAGG
GATTATAATGCCTTATATTTTATGAAAATAATCTAGTTATCTCGGGATTA
TACTCGTTTTAAACAAAGATGGCGCTAGGGTATTTCTATTACCCGATACT
ATTATAGACTACTACGAAGCTGGTTCCTAACAGTGTTTCCTCTTAAGTGA
AGAACAAGTGTTCTCAACTTGGGTTATGGATATTTTTAGTGTTTTATTTT
TAAATGATACATGTGGTGGATTGTCTACTTAATGATCTAGGTACATTTCT
ACCCTTGTACATATTTTTTTGTGTGTGAAAGTTATGTTGTGCTTATGTTC
ATGTTCTTGAACTATTCTCTTCTCCAGCCTCTGCTCCAGTAAATGGGATA
TGTCTCGAGTCGCCGTGTCCTTTAAGCCCTGGTACATTGGATGAGCACAA
CCTGCTAAAAGCATCTGACGTTGCTTTCACTTCTTTGCCAACAATGCATT
TAGATGAACAACAAGAGGGTGGGATTCTTCAGAACAATCAAATGTTGCCA
TCTGATTATGATGGGAGAATGCTTCCGAGGTCATGTCCTGAACCAATAGC
TTGCAAGAAATCGACGCTTTATACAAATGTAAGATATGATTCGCGTTCAT
CTCCACTTAGTCAGTGTAAGGCTCAGAGAAGAATTTATTGCACCTACTGG
TCCAATGAAGCTGTTACTCGGGGCTTGGAGGTTTGTTTGTCTATCTTATA
TATATGAAGCTTCAGAAGCATTAGTTAATTGCTTTGGAGTCTTTCTAAAG
TTTCGGAGCTGTATTTAAAAAACAAAATCCACTAACAATTACCTTTCTTT
ATCAGAGTGGTGATATTTTCAAGGCATTAATTCGTGTGAATGCTCACAAT
CGCCTCGAGGTATGTCTTCAATACCTATCTTCTTTTCTTCTCACTCAGAT
CTACATGCATTTGTTAGTTTTTTTCACTAGAATGCATTAAACTATTAATA
GGCATACTGCAAAATTGGTGGAGTGCCTACAGATATCCTTATTAATGGAA
TCATTGCCCAGAATCGAGCTGTAAGTCTTCCTTTTGTCAAAGATGAATAT
ATACTTCACATTTTTTTTATTTCCTCTAATATTATAATAGTATTAGACTT
AGATTACCTAAAATTAGTTGTCTAAGTATTCTGTCAATAGCTGTAAACCC
CTAGCATGATCTTGTCCACAAAACTGTAACTCATGAGTCATTGCATCTAT
GGGAAATTGCAAGCACGCACTCTCTCCCTCACATTCACACACTCTCTCTC
TCTCTCACACACATGTATATAAAATTAGTTTATATATAAATTGAAGTTGG
TCTATATACCGCAAACCAGTGAATCATGTTTATATTTATTGAATTTGAAT
ATTATGGCCGTGTTTGGAAGTTAAAGGTTTGGGGTGTTTTAGAGGTTTAA
TCATTTCCATCCGCTAATATTAGTGTTTGATAGTTGGCGGATTGGAATAG
TGGTTTGAGCTCAAAAAGCTAATTTTCAAAAAGCTACTTTGAGGATTGTT
TTGGGTTAGAGGTTTTGGTATGTGTAAACAGCTAATCAAATAGCTATTTA
CCAAACAATTTTACAAGAAACCGCTAATTCAATCCGCTAGTCAAAACATC
TATTTCAATTAGCTAGTCAAAACATCTAATTCAACCCGCTAACCGCTAAC
CGCTAATTCTTAAACAGGGCTTATATGTATTCCTAATGAAAAACATATTT
ATGTATTATAAATAAAAAATTTCGTTGAAATCTAACTAAATTTGTTTTTC
GCTCTTGGTAAATGTAAGTTTATATAATGAATCTTGTAGGTTTGAGTATG
TATTTTAATTTGGTTCGATTAGTACCAGAGTTGGACAAGCATAGCAATAA
ATCAGTTTATAGTATCATTTTAATGTTGATTTTTTTGGGAAATAGTGTGC
ATTTACTGCTAAATTATTTTTAAATGTGGGCAACCCGAAGCATTTTATTA
GAAAGAGAAACTAATACATATGAACCAAGTTGCTTTTATACCGCTCCCTG
GATGATTATCCTCTATTTTCATTTTTACTTGGAACTTCCTATTTCATGTA
TGTAAAGAACCATTATTAGATACGCAGTCTGCTTATCATTTCATTTAGTC
CTATTGAAGCCATAACTAGTCTGTGTAAGACATGTTAGTCGAGAGATTCT
TACCTATCAATATGGTTTTAACTTATTAAACAGCTAATCTTTGACTTCCC
GAGTTTTTTTTAGAGCATAATATGATGGCAGACATGTAATCTTTGTATTT
AGCTAATAGATATGTTGCCTGCTTAAACTGCATTTTTGCTTTATGCAGAT
AGAAGGCGACATTGTTTTGATTAAAATAGATCCATTGTCTTCATGGACCA
AGATGAAGGGGTCTTCTGGACCATCCAACAGTGCTGCTGTCAGTCATGTT
TGTGATTTGGTTCCAGAACCCACTGTTTTAGTTGGCAATATCTCCGAAGG
GGAAGGTATAGTAGATATTGATTTTGAGTTCGGTAATCGTATGAATCTTC
TGGAAAAGAAATTACATGATGAGGGAAATACTTACTTTGGGGAAAATGGT
AGTCCCGGACCAGTTGGCACTTTGTGCAAATCTTGCGTCAACAAAAATTT
ATATATTGGAAGTTCACGTGAACCTAAAAACAATGCAAGTGCAGTGAGAA
AGTTGTGTGCCATGACAAGTGCATATCCATTGAAACGTCCAACAGGAAAA
GTTGTTGCAATCATTGAAAGCTCAAGTTATCGGGATGGTGTTGTTGGTAT
TCTTGATGTGAAGCAGTGGATTTTCAGTAGGGAAGATTGTACAGAGAATT
GTAAGCCTGTTAATCTTCCATTGTCACTTTATTCAGTTGAGTACATACCT
TTTGTACCAACTGATTCAAAGTTTCCAAAAATGATGGTTCCTGTTAGTGG
ACTACCTGACTGCATCCAGAAAAGATTGGAAGTTGGTGATGCCACAATTG
AGGCAGAACTTGTAGCTGCACGAGTCGTTGACTGGGGGGAAGAAGATGAC
GTTCCTGAAGCTCATGTAATTCGAGTCTTTGGATTTGGTGCAGATGTGGA
GGCACATATTGCCGCAATTTTATTTGAAAATGCAATCCACTCCTGTGAAT
TTCCTCCCGAGATACTCTCTTGCCTTCCAAGTGTAAATTGGGTGGTACCA
CAAAAAGAATATCAAAACAGGCGAGATATAAGAGATTTATGTGTCTTTAC
AATAGATCCCGCTTCTGCAACTGATCTTGATGATGCTCTATCTGTTGAAT
GGCTATCCAGTGGCATCTTCAGGGTTGGTGTCCACATTGCTGATGCTTCT
TACTTTGTTCTTCCTGGCTCAGCATTAGATGTAGAAGCTCAATTTCGCTC
AACAAGTGTATATTTGTTGCGGCGCAAGTTCCCCATGCTGCCATCATTGC
TTTCAGAAAATCTAGGTTCACTTAATCCTGGAGTAGAAAGACTAGCATTT
TCTATATTTTGGGATATTAATTTTTCTGGGGAAGTTCTTGATCGTTGGAT
AGGCCGCACAATAATACAATCTTGTTGCAAGCTTTCATACGAGCAAGCTC
AGGACATTATTGATGGGAAGTTTGATGTGGAAAATTTTACTGCCTCAGAA
AATGGTTTGCCACGTGTACATGGTAAATTTCAGTGGTCCCATGTAGTTAA
ATCTGTTAAGAGTCTGCATGCCGTATCCAAAACTTTGCCGGGAAAGAGGT
ATACTGATGGCGCTCTCTCATTGAATAATCCCAAATTAATTTTCTTGTTT
GATGAGGATGGGAGCCCATATGATTGTGTGATTAGTAAAATGAAGGACTC
GCAACTCTTTGTCGAAGAGTTTCTGCTTTTGGCCAACAGGACAGCTGCAG
AAGTAATAACTAGGGCCTATCCCTCTACTGCTTTATTGCGAAGGCATCCT
GAACCTAATTTGCATAAGCTTAAGGAGTTTGAATCCTTTTGTAGCAAACA
TGGTCTAAATGTGGACACTTCTTCATCTGGAAAACTTCATCTTTCATTGA
CACATATTAAGCAAGAACTTAAAGACGATTTCATGCTTTTTGATATTCTT
TTGTCATATGCGACAAGATCAATGCAGATAGCTACGTACTTCTGCAGTGG
AAATTTAGAAGATTGCGAAGCTGATTGGGGTCACTATTCTTTGGCTGTGC
CCCTCTATACTCATTTCACGTCTCCATTGCGTCGCTACCCTGACATTGTA
GTTCATAGGACGCTAGCCGCAGCAGCCGAAGCAGAAGCAATTTATACGAA
GAACAAGCTGCTTAAGCATGAAGACAGGACCGGAAGATTCTTAACTGGTA
TATATTTTAACAAAGATGCTATAGAATCTCATGAAGGTCAGGAAGCACTG
TCAATTGCTGCGGCAGGACATAGTGTCCCATGCACAGAATTGCTGATGGT
TGTTGCTGCACATAGCAATGAAAGAAAACTGGCTAGCAGACATGTCAAGG
ATGCTACAGATAAACTTTTCATGTGGCTTTTACTGAGGAAGGAGGTAATC
GTTTATCCTTTTGACATGATATATATAGTCTTCATGCTTTTCACAGTTGT
TACCAATATAGCCAATGAATATATTGCCGACTTCACTTAATATTGTTTTT
CCCATCGTATATTTATGGAACATAGTTTCTAAAGTTCAAATAAAAAAACT
AGGTTTGCTACTGAAATAAAATGTTAAATGAGGATTAATACAATCATCAG
TTAGGTATCTAGATAATAGTAGCTCATCGCCACTATCTAGTTGGAAGGAA
TGGGATGAAGTTAACTCTCCTTTGCACATCTGTGCATAACATTCATTTAT
CTGTTTATTTCATTCCACAAAGTTTGAACCAAGATCAATTCTACCAATGC
TAGTGAATGCTCATTCCTTTATCTCCCTCATATTTTACTTGTATCTTATT
GTGAAGATTACAGTATAACATATTTACAATGTTAAACTGTTTTCATTATG
GTTTTCCTCGACAATTATTTATTTTCACATCTTTCATTGTGTGACAACTG
GCCAAACATATTACTTGGTTGTGTACTTCTGGATGGACTAAAACAAGGTG
TAGATGAATGAGAGCTAATCTACTTTTCAGATATGTATGAAAACATGTTC
CTTATTCCATAATCTAGACATAATCTGGATTCTAAATGCTGTTCATATTG
GTTATTACTTGCTTTCACCATTTTCTGCACCATTGATGTCACTAAATATG
TCGTTATTTTTATGTTTTTTCTTACCTGCATATCCTTCTCTTGCATCTCT
TATTTTCTCCATGAAATTGTTCTCGCTTTCAGTCTTATTATAGTCTTATT
TTAAATGAATGAAAAGATGGGAGATGATCTTATGTTCAATGTGGTTTCAT
AAAGCATGGAAGAACAGTCACTTTTGGTTAGAATGAATAAATTGGAGATT
AAATGCTTTGAATAACTATGAAAACGGTTAAAGGTGGAAGATGTATGATG
AATAAACAAAATGTGAGGGTAAAGTTTTTGTTATAAGTTGTGAACACTCA
TGTCTTGATTGTTGGAATTAAGTTCTAATGTAATTTTGTATGGGATGACG
TGTAATAGTAGGACTTAAATATGTGTGTGTAACTAAGCAGTTCATATTAA
AATGTGATACTCACCATACATCAGTCTTTCAAAACAAATGGTGCATTAGT
ATATAGGTCGCCCTAGACCTACAGAGTGCGACCTACAGTGTGTATTTGAT
TAAATGGCACTTCCAATCTTGTTCTGAACTAAAAATCATTCCTCCAATAT
AAGACAAGAGGATTAGCTCAAAGGCATATAATGGTGAATATGTCAGATTG
TATAGATCACCCTGTCATTCTGAGTTAATTTCTACTCTGCACTTTAGAGA
TTATAGATGGAGATCGACTCCAAGCAGTTCGTTAATATATATGACAAGTT
GGCGTCGTTCTATCTACTTGAAGAAAAGAGTTCTCACTTGCCTTTGCTAT
GATAATACAATGGTAAGGTAGCATAACATGTATCTAACATGCAACTCAGA
AATTGAAAAGTCATCAGAAATATCAATAAGAATATAAGTTGAAGAAATTT
AAGTTTAAGCTTGGAAAAAAGCAAGGAAAATACCCACCCAGGTGTATGTA
CAGGAAAATGCATATTGGTTATATACTGTATACCTAAAAAACTGATTGTG
ATAAGGTTATAATATAGAGGGTTCAGGGGTGGAACACAGGACACAATAAG
GGGTGCAAACCCCGTCTAACTTTGTCATGTGCTTGGACTCCAAAGAATAA
ATCTTGGAGTGTCTGACATCATTGTCAATTATCCGATAGCTTGGGCCTTG
GCTTATATTGATGGGTTAATACTATTGCTCCTTGCTGCTACATTTATAAG
GTCAAATTTGATCATAATATTCAAGAGGTTTCGTGAGGCCCCCTTTTACC
CAGTCCCAACTTAACTTACCTTATTGATCTTGTGTTTATTATATTGGCTG
TTTATAAGTGTTATATGTTCAGCATGTGTATATGGTAATTCTTTATAATG
TTTACGGTTTTACGCTGGAAACCACCTGTTCTGCTAACTACTTTTGTGGT
TTTATGCATTTTTCATTATGATTTCGGAATATTAATCTTTTCCTTATTGC
CTCTTGCTCTAGGTATTTTTTTCGAAAGCCCGAGTCGTTGGTCTTGGTCC
TAGATTTATGTCAATCTACATTCAGAAGCTAGCTGTGAGTACCTTTCGCA
CTCCTTGTTCCGGGTTTTTTAGTATCTCTCGTTTTCCTTATGAGAAGCTA
ATAATGGTAGACTTGTTAGTTTGTAAACTGACAAATTACTGATACATTTA
ATATGCCTCGTAACAACTGTGGAACCAGATTGAGCGACGTATATATTATG
ATGAAGTTGAAGGTTTGACAGCAGAATGGCTTGATGCTACATGTACATTG
ATACTTAATCCGAGCACAAATAAAGGTATACAAAGAAAAGGAACTCCAGC
CAAGTGCAGGCCACTTGAAGAGGCTGTGTTAATTGTCAGTCCACATAACT
TGATGGCAGCAAGTGATCCTTCCAGTAAGCATTGTAATGGGGCAGGTAGT
TCAAAAATGGAAGAGCGAGATGCGCTAGCCAGCATCATGCATCCCGAAGA
TATAGAACCATCTGTTTTTCCTCTCATAGTTCGCAACTTATCAACAATCT
CTGTTGTGCTTCATGCTGTTGGCGGTAATGGACCCCTCGACATAGGAGCC
AGGTTGTATGCTAGCTCCTATCTTGTATAGGGAATTTTTTTGTGGGTCTA
GTACTTCCCCAAAGCAAAAGGTTCCCCAAGATGACAAGAATCCACAATAA
TTTTTGGTTGTGTTGGTTATGGGGTAGTAGTGTATAGCTAGGGGATAGAA
AAGAGACTATGAAGTGATCGGGAGTGCATTAGGGAAATGCCTATTCCTGA
ATGTGTGACTGTCAAAGAGGCTTCGACAGTAGTACTGTTATAGTGGGTTT
TTGTTTGTTTTTTTTTACACAAACCCGCAACCTCTTTGAACCCTTGCAGA
AGGTGTGGGAACAAGCCCTAGTTTTTATGTAGGTTAGTTCCGGGAACACA
CTGACTCGTGAAAGTCGACATCATATGTTTCGCTTTTTTCTTTGTTGGTA
TCTTCTTTCTAATGGATTGTTACCCAATAATTTTAACTTTGGGTTTCCCT
TATCCAACAGTTGACTTGTGTTACTGATATGAACTACCTTTTCTGCTTGT
AAAGTTGGATTTCTTAACAAATTGTCTGTAAAATGTTGAATCGTTCAATA
AGAATCTCTTGTTACTTTGTGTTCTGCA