| NCBI Gene | ![]() |
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| Relationships |
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| The mRNA, XM_017397166.1, is a part of gene, LOC108223096. |
| The genetic_marker, MK005496 K2940, is located in gene, LOC108223096. |
| The genetic_marker, MK007703 TP147982, is located in gene, LOC108223096. |

| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |

| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017397166.1 | XM_017397166.1 | mRNA | DCARv2_Chr5:31432056..31441640 |
AAATCAAACTCAAAATAACAATAATGGACAAACAATGAAAAAATAGAGGA
AGAAGACGACGAAGACGAACGAGGGAAGACATCGTCCGCCGTTTGCATCC
TCTAATTTAATTATACACACCTATACATACACAGACATACATCTATATTC
TTAATTATACACACACAAATCAAATCAATTGAGTTGAGTTGGGTCAATTG
AGATCCATCGAGGTCAGATCTGATCTAATTGAGATCAATCAATGGATGAT
TTCGGTATCTTTGCTCGCGATTTAGGTTACAAACCGCAAGGCAAATCGGC
GCCGATGAAATCGGCTGGAATCGGGTCGGATCGTCCCTCGTCCGCCCCGT
TTTCCGATGATCAGTTCGGCGATGTGTTCGGTGGGCCTCCGAAGTACTCG
TCGAGCAATTCGAATGCCAAGGCTGCTGCTTCTTCGATGTCGGATTTCGA
TTACGATTCGATTTTTAAGGCCTCGAGAAATGAGGCGAAGAGTAAATGGG
ATTCGGCTCCGTCGTCTGATCCGGTTTACGATAAGCCGGTGTATGATGAC
GATATATTTGATGGATTGCCTGGTTTGAAGAGTAAGACGGTGTCGTCTAG
TAGTAGGTTTGAGGAGAATGTGTTTGCAGATATTGCTAGTTCGCCTCGCA
AGGGGAGTAGTGGTCGGGATCATTTTGAGGATCTTTTGGGGAATTTGACT
AAGAAGGAGAAGGTGGAGCCGAAGAAAAAGAGTATTAGCAGGACTGCCAG
TGATTTTGATGATTTGTTGCCTGGATTCGGGAGCAGTAGTCCGAGTAACA
GGTATTGTTGCACTCGCATTGTGTCTTTTGTGAACATGTGGTTATGATTA
AATTTATCGGGTAGCTGCTGTTTGTTTAGCTTACTGAATTTATGTGATTT
TTTACATATAATTGATGAATTATTACCTGCACAAATCTATATAAGAGTTT
TGAATTTGCGGGACGGCTACTACTTTAGATCTATGTTACCTGGTCCCACA
AGATGTCTCCGTAATGGAATTGTGTTCGAGTGTTAAAATCTAATGTTTGG
AAATTTTGAATATTTTTGCGGCGAAACAAGTGGTGAGCGAAATAAAGTGA
CGTCATATCCATCTCCAGCATGGGTATTTTAGCTAAATTAAATATTAGGG
TAAACATAGCTGTAGATGGGGTGGGTTACTTAATGTTGAAAGTATATTTA
TACTATGTTGATTGTAGAAGTGCTGTTGTGATAGGAAGTTGAATATGATT
TGTTTGCAAATATGCTTGTGGCTTTATGCTTCCTGTCCTGTTTCCATTTT
TCATCTGCTTTATGCTTCTTGTTTATGTTTCATGTTTTCTTTGACTATTA
TAGCGAATAATAGGTAGAGAAGAAAGCGTTTATTTAGTAACTTCAGTTGG
CAGTTACTTAATTCTTGTAAGCGCGAGGCTAGGCGCTCACCTAAGCTACC
GTTAGGCGGACTATATGGTTCCATTATTTTCTTAATATGCATGCATTTAT
ATGTTATAACAAAACAGATTACCTACATATATGTGTAGTTACACACACAC
ACACACATATATTATATGTGGTTATATATATATTATATATATATATATTA
TGTAGTTATATATGCTGTGTATGTAACTATGTATTTTTATACAATTATAT
ATGCGTGTATAATAATTGGAAAAACATAAATATATGCTTGTATGTATAGT
ATATGTTTATATGCTTGTATAGCTCTGGGAAGAAAACTTTAGAAAAAAAT
ATTGATTCTGAAGCTCATCGTTTGGGAGATGTGGTGTGCCTCCAGTGCTG
TGCTCGCTTTTATGTGCCTCGAGTGCTTATGTGCAGTTCAAAAAGCGCAA
GATAAGTGCGCTTTTGTAAAGATGGGACATTTTCAAAGGAAATGGGTAAA
AAACGTACGGACAACTGACACTAATAGATACAAACCATATATACATACAA
GAATGATAGATATCGAACGGGAGACGAAGATTAAACTCATCTTTTTATAT
GATTCTTGCATATAGATACACATATGTTGTATATACTGATTTATTTATAC
ATACAATTGTTGTATACACACATATGACTTGAGGATAATGAAGAAGACTT
TGTTGAAAATCCGAATTATATTAGTGAAGATGATGATCTTGTGGATATTA
ATGATGAAGACGAAGAATGGACTAATTATGCAATTCTTTGTTACTTTGAC
TTCAAATTATTCTACTTTGGATCTATATCATGATGCATTTTATTTTTTCA
TCAATTAAATGTCTTCTTATCTATAAATCAACAATATTCTACTTAAATAT
CGATTATATATGTATATTTATTTGTATTCAATAAATCTGCGCATTTCGCA
TTGCGCGTTGCGCTTATGCTCCAGGGGGCCTCTGCGCTTCTATGCACGTA
TCACGTTTAATAACACTGGATGGGCCGGAAATAACCAGAATTATGCAGAT
TTAGGCGTTGCCTACTCATCTAGTAGCTGTCTAAGTACATAAAAATACAG
GCAGGGCAGACGCCGTCCTTATTCCACCGCCTTCTCGCCCAGATGACGCC
TTGATAACTATGAGTTCCCGTGAATAAATATGTTATATTATCATGCATAC
TATCATTATTACACGTGCAGGTTGGATTTGTAGTCCTGAATGAGTTTTCT
GAATCTTTTTGTAGTTTCTTATAGGTTTATCTAGTAAGAGCAGCACATAT
ATTGAAGATAGCAGGTAGATTTATAGATAAACAGGGAGGACAAGAGAGAT
TAGACCAGAATTGCAGAGTTAGAAGACAGAAAACTAGAGAGATTCACTAG
AGAGGTCGAGAATAGTTGTGAGAGATAGGCTAACATGACCAGAAAGTTAG
TTGTAGAGAGAGAAAATGACTAGCAAACTAGAGAGAGAAAGATTGTGGAA
AATATTTATTTTTCTTCATATTCAAATCATAATCTGAAAACCATTACAAC
TTCTACTTATAGACTCTTATAAGTAACTAACTCTGAAAAGACTACAATAC
CCCTAGATGTCATACTACTACTTTACTGTAGTACTAACAAGTCATGACTA
TTGTACTAATGAGGTTCGTTGTTCCAATAGGTTCTTCCTTCAAGATGGTA
GGCTGGTAGTTCTAGACCGAGAGAATTGGCCAAGGTTTTAAATTCTTATA
AAAAACGAATATAACCAAACATGTATTTCTTACTTGGAAGTAGGGTCTAG
TAACGTTTGGATGTAAGTAGGCCTTACCGATGGCTCTACCCAAGCAGTAT
AGTGTACTTGCCTCGTGGTTTTTTGAGATTTTTTTGGAAAGTTTTGAAAT
TTTAAATCTTCTGCTGTAGGAAATGAGGTTTTTCTTTAAATGGTTCATAA
GTTGATAGCCTTGTATCTCAGGCTTAGCATTTTGATGTATACATTGCGCA
TTTAGTATAACTGGATTTCTTAATGATCTTTATATTGATTATAGAGTATT
TCTTTATTAGATTAAAATCAATTACAAATAAGAATCATAATACCGAAGCA
CATTAATCTCCTTGAAATTGGGTTTTCAGTAGTGTGAAATGAAGTTTAAG
AGGTTTTTTTTGTTCTGATTGTAAGTTCATACTGATAGGGTCAAAGATAT
CCAATCATCACAAATTGAATCGCAGTGCTAAATATGTTATAACCTCTAAT
CATGCCAGTGCACATGCTACTAGTATGTGTCATTTTAGGTAAAAGATATT
TGGATCAAGTAGATAGCATTCCTCTATCTCGTTACTAGCAGTTGAAAGAA
ATAAATCTTCAAGCTCAACAATGATGGGAAAGCAGCTGCCTTTTTATTCA
CTCAAAATTATTTTGGTATCGAGTTAATTTTAATGAGTAAGACAATAAAT
TTTTATCATGACCTTTATGCAAGCTTTTGTGTCTGATTTAATAATTCCAC
ATTTTTCATGCAGCGATAAACACAAATTTTTGTTTTACATTGCTGCTTTT
ATTTCTATTTTAATGATGAAGATAGGTGACAGAATTTGAACTGTTGAAAA
TATTTTCGTAATGGGAAAAGATCATTTATCGAGCAAGCTTTCCTTATTGT
TTGAGATCATTTTCCTGATACTCTCTATGCTCCGAAGAAAGAATTGTTAC
AAATATATGAAAATTTGTATTTGTGATTGAAATGTTTTCAACACTGTTAT
ATGTTGCATGTGGTTCTCATTGCAGATATTTTCCCCTACATGCAAACAAG
TCAAATGTTTGTACCTAAATATGTAAACTTACCTTTGGGCATATGTCTAA
CTTAAATGCATTTTTTAAGTTATGTTTATGCAAGCCGTCTGATGAAACTA
AAGCATTTACCATGGTACATATTAACATGTATGGTCACAAAATCTTTTTA
AATAATCTCTCTTGCCATTTATTTATTTGACATGCCTGTAACTTTTGTGG
ACTCTGCACATCATTGAGAAGTAGTTCATTAACTTCATATTCGTGTTGTT
TGTTTGTGCAGGCCTATACCCGAGTCCAATCAAACTTCGAGACCACCTGC
TAATTCAAATCAGACATCCAAGGTGATAGATGACCCTTTTGTGGTACTAG
AATCAACTTCAACTCCAGGGGTGTCTTTTATAAGTGATCCTCTAGAAGAG
ATCAGCAAGCTTAGTAAACCTGGAAATACAGAGGAAAACAATTCATCTGC
GAGTGCAGGAGTATTTAATGATTTGGACCCCCTTGGCGATTTTGTTAAAT
CTGTGCCTGCACATTCATCTGGAATTAAAAACTCTGGGAAAGATGGGAGC
CCAGCTAGGGCAAGATCAAGCATGAAGAGGACAGACGAATCTGCTAGTAC
TGAAGCTTTTGGAATACCAGCTTTTAATACTTATACAGAGAGAAGCTCTC
AGAAGAAGGTGCCTGTTGATGATTATCATGAATCTCATCAAACCTTATTT
GAAATGCCTGCTGGCCCAATTGGGTCTCAAAAACCAACTGGGCAACGAGC
TTCTTCTCCTTCATATAGTGTCGATGTCAGTGAGTCAAATTCCCAGTCTG
ATCAGTCTTATAGAACGGAAGAACATTCACAATCATCTGAAGAAGTATGG
CTCACTGTATCCGAAATTCCTCTCTTTACACAACCCACCAGAGCTCCACC
ACCTTCAAGACCCCCTCCTCCAATACCCAGACACACATCAAAATCTGAAA
AAGCCTTCTCGACTTCAAACAGTAGACAAAAAGGCAATGATTTTTCTCCA
CCATCTTCTGCTCAGTACCCTCAGAGTCACAATCCTTTCCGTTCTGCACC
AAAGAATACCATGGATTCTTCGATAGATGAACTAGAAGAATTTGCTATGG
CTAGAAATTACAATAATTTCAATGAAAATTTTGAAATCAGTTCCGGGCAC
AACAGCAGCACAAACTCTGCTGCTGCTGCATCTGCTGCTGCCATGAAAGA
TGCTGTGGATCGTGCTGAGGCAAAGTTGAAGAATGCTAAGGAGATAAGAG
AAAGAGAGAATGCAAAGGCTGCTAGAAGTAAAGAATCTGTGCAGCGCGAA
AAAGATGAGCAAGATGTACTGGACGAGGAAATCGTAGAAAATCAGGAGAG
ATTGAATCGCGAGAGGCAACAGAGGGAAGAGGAAGAAAGAGAACAGAGGA
GACTAGAGAGAGAAAGAGCCAGGGAGATCGAAAGAGAAAAGGCTAGACAA
GCTGTCGAAAGGGCTACAAGGGAAGCTCGTGAAAGAGCAGCTGCAGAGGC
CCGTGAAAGAGCCGCTGCAGATGCTCGTCTAAAAAGTGAGAGAGCTGCGG
TTCAGAGAGCACAAGCTGAAGCACGTAGTAGAGCAGCAGCCGAGGCAAGA
GAAAGAGCAGAAAGGGCTGCTGCAGAAGCTAGGGAAAGGGCAAATGCTGA
AGCAAGAGAAAAGGAAGCCAAGGAAAAAGCTGCCAGGGCTGATGCAGAAG
CACGCCGCAGGGCTGAACGAGCTGCTGTGGATCGGGTTGCTGCTGCAGCT
AGAGAAAGAGCAGCTGCAGAAGCACGAGATAGGCAAGCTGCAGCTGCTGC
AGCAGCAGCAGCAGCAAGAACAAGCCAACAAAAGAATGATAATGACCTAG
AATCGTTCTTCAACATGAGTTCTCGACCAAACAGTGCACCAAGGCCAAGG
GCGAGCTCTTCGGTAAGAAGCATAGTGGTTTATATGTACCATGAATTTTT
GCTCATCTCACTGCATAGGAAGTTAAAGAGTATATGTTTATTTTGTAATT
GTACACATGCTGTGTCCCAATTACCAGGACCCTTCGTTGGATCCACATTC
TCAAAATAGGGGAGGGGCTGATGGCACTAGGAGGTCATCTCAAAGTGGAG
TCACGTCAAACATGAAGAAGGCATCTTCGACCACTAACATCGTAGATGAT
CTCAGCTCAATTTTTGGAGGTATCTCATCAATGTTTTATTTATTGTATAC
GTTTACACTCTTTTACCACTTTTCTGATGTGTTACTTGGTAAATGTTTTC
AATTGCAAAAGGTCCTCCATCAAGTGGAGATTTCCAGGATGTTGAAGGGG
AGACCGAAGAAAGGAGAAAAGCTAGATTAGAACGCCATCAACGCACTCAG
GAGCGTGCGGTATGACTTTCTTTACCTAATGATAACTTAAATCGACTTTA
ATTGATAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCACAAACCCCGTCCCGCAAC
GTAGTTTACTTCTAATGTTTTGGTTTTTATTTTCAGGCTAAAGCAGTGGC
TGAAAAGAATCAACGTGACCTTCAGCTACAAAGAGATCAGGAAGAAAGAA
GTGTAAGTAGTTGTAGCATCTCGTATTAGATGTTTTCATAAATTTGGTCA
AGTTCATGGGTATGGTAGCTGGTCTTTGATTGTCATCATAATAGTTTAGA
CACAAGATTTAGAATATACTCCCTCCATCCCAATTTAGATGATCCTTTTG
GAAAAGAAATTTATCACAAATTAGGTGAGCCTCGCTGTTTTCAATGTACA
AATATCAATAATCTTCCAAATTTACCCTTTCTTATTTGTCATTTTCAATG
TACCATCAGCACAATAAATATTGGTAGAGATGGAAAAAAGCACAATCATT
TAATACTTCTTAATATGTGTGAAATTAGCAAAAGGGTCATCTGAATTGGG
ATGGAGGGAGTATTTTTCACCTGTAAATATTCGGCCCACGGTCAAACTTC
ACATTATCGTTAGGGCTTTTTTTGAGTATCTTGCTTGCCTTTATTATGTT
AGACCTTAAAATAAATTAACAATTATGATACAGAGTCACAGACTCGTTCC
CCTCGCCTGAACATGCATGTGTAAATTTTAAAAAGAAGTAAATGCATGGA
GTCGCATAATGTGAAACTATGGCTTAAAAATTCCTTAACTATGTGGAGCA
CGTATAGTTAGGACTGTACAGAACTATCTTGTCCTGCTAAGATATTTACT
TGTATCATGTTCTTATGAAATCAATTAACATTCTGTAGCCATCTTCTTTA
TAAAGTTGAGATACTCTACTTGTGTCAAAAGAACAAGGAAACAAGAAACA
CGGAATGAATATTCTCAAAGACTTAAGGCTGAAGGATATTTTTCTGCCCT
CTGTTGGTTAACTTGCCTAACTTAAATCTTTATATATTTCAGAGATTTGC
TGAAACATTAGATTTTGAGATCAAGCGTTGGGCAGCTGGGAAAGAGGGAA
ACTTGCGTGCACTGCTATCAACATTGCAATATGTGTGTATTTTTCATCTT
TATCTTTAATCTAACCTGAGTTTTTGAAAGAAAAATTCTCCTGCAAAAAC
AATTCGGTTTGGTAGAGAACCCATCTTTACACTTTTAAATAATATTTAGG
TGCTTTGGCCTGAATGCGGGTGGCAGCCTGTTTCATTGACTGATCTGATT
ACGGGTGCTTCAGTTAAGAAAGTTTATAGGAAAGCAACCTTGTGCATACA
TCCTGATAAGGTACAACAAAAGGGTGCAAATATTCAACAGAAGTATATTG
CTGAGAAGGTGTTCGACTTGCTTAAGGTATCTTCTATATGTACAATATTC
CTTCTGATTGATATATCGACTGCTTGACATAATCTTTATGCTATGCTACC
CCGAATCTTCATTTTGTTGGGTATTAGACGCTTATTTTAGGCCAAAAACA
TGTTAAATTTACAAGATATTGCCAAGTCTGATACTCGAACAAGTATCCAT
TTTGGACACTTTTAGCGGAGTCCAATTAGCATAGTCTTATGTGAACGAAG
TTCTCTTTTGAGACATTCCAACATGTTTAGAATGTATCTAATGTATGCAT
ATATTGTACTGAGAAGGTAAATCCCATATTATGCTCTTTTATTTTTGCTA
AGTTTAATTTTTTTGCTAAGTATATTATGCTATTTAACTTCAAGCGGTTA
TATTTGGGGACTATTTTCTCTGTATTATTGTTTCTAGAGAAAAGGCTTTA
GACTCTGAAGTGCCCGAATAGTCTTGAAGTTTGTATATATTTCTTGCTAT
ATATGGGTTTTTTTTCAATTTCGAAGAATATTCTTTTGACTACATTCGAC
TCATTCCTGATCGTGCTTCACTCTTCTTCTTTTCTTATATATTTATCCTT
TTTGTGTATAATAGGAGGCCTGGAACAAGTTCAATTCAGAGGAGCTTTTT
TAATTTGTTTTGATGAACTTTGAAGCTGCTTCATATAGGAGTACACAATT
TTGCAAGAGAACCACAACATCTGGTTTTTTATATGTCCTGTACATCCTCT
GCTGCTCTACCTTGTGTACTTGCTTCATAGTCTGAGTTTTGGAATAGAGC
TTGCAGTAATTTATGATGATGAAATCAAGTCTGCAAGTGTAGCTGTAAAT
TGATTTGGATGCGAGCAGACGGAAGATATCATTTTGGGTTGCTGTAATAG
TGTAATGAGCCCTTGCCACCCATGATTATATGCATATTTTGCCTTTCTCG
GTCATACAGAAACAGTGTGTATCAGATGGTTTCGTCTTGTCGGATGTTTT
CTCTTTTATCTGTGCAAATTTATTTCTTTTGTAATAGTGTTTCGTTATTC
TTGTGGTTTTGTTGATTTATGATATATATCAGGTTAGGGGATTATTCACT
GTTTCTGGTTTACTTGGAACCATGTTGTCATCATAAAGTAAATTTTCATT
TTCTTAAATCTAGATTCTATATACTTCCCTTCAA