| NCBI Gene |  |
|---|
| Relationships |
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| The mRNA, XM_017398164.1, is a part of gene, LOC108223757. |
| The genetic_marker, MK006628 K4072, is located in gene, LOC108223757. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017398164.1 | XM_017398164.1 | mRNA | DCARv2_Chr5:39607437..39617375 |
TAAAATATGCTAAGTTTGCTCCTCAAAGTCTGAAACCATGCTACATCTGA
TACAGATTTTCCGCTGAGCCATGTTTATTTGAAAAATATTAACACCCCCC
AATTATCATCTTCCGCTAAATAATAATTATTTTACTCACAAATTTCACCA
AAACTCCACCCACTCTCTCACCATCTTCTTCTTCTTCTGCTACTTGCATT
TTCTTCTCATCTATCCCCAACAAACAAACACACACACACACAGAAAAAAC
ACACACAGACCATTTATATATTTTCTTCATTTCTTGACATTTTTCACAAA
ACCCATCATTTTTAGCTGCCACTTTGCATTTCCGCCACTCAAAATCTTGT
AAAGTTTGCTCCTTTTTAGCATTTCTAGACTCTTTGGTGCAAAAAGATAA
ACCCCTTTTCATTTCTCTATCTATCTCCATCAAAAATTTACACACATATA
TAAATAGTTGTGTGTGTAATCATATATAATGTGGGGAAGACTGCATTTTT
ATTGTGTGATTGGGAATTTGGGCAGGATTTGATGGACCCCATGTTGTTAG
TGTCTTCAATCTCTTGCATTTCATGGAGTTTTTAAGGATTTTGAGGGCTA
AATGTGTTTATATGACAGCTTTTAAGACTAGAGTGAGATTTAATTTGTTT
TTTGTTCAGGTATGTGGGCCCTTTTTTTGTTTTTTGTTTTGATTTGGAGT
GTAGTTGTGTAATGTTCACTAGTTCTTGTGATTAGTTGTTGAATTGAGAG
ATTGGTTTGATGGTATTATTGAGCTGGATTATGGTTTTGGTTGGTGTGAT
GTTTCTGATAATGGGTGGGTTTTGGAACTGGCACTTGTGTTCTTCATATA
CTGAATTTCTGTTTTAGCCAATCTTCGAGATTTTGTGCTGATTGATTGTC
AACATCCCTGGTTTGGTTTCTATTGTTGGTACATAAGCTAAAATACCCGA
GAGAGAAATATTGTTTTGTTTTGATGTAGCTTATGTATATAGACTGGAAG
GACAATTTTACTATTGTTGTTCTTTCGACATTTAGGTAGAACAGAATGTG
TTTTCATGTTTGGAATTGGTCTGGAGTGGGATATACTCTTTGCTTACTTT
GCTTAAGCATTGTAATTAGATTCGCTAATTTGTATTGAGGTCAATAGCAT
ATGTCGTGCTTCTTGTTCGGGCTTGAAGTTTTTCTCTAACACGGGTCTAG
TAGATTGTACTCAACTTTTAACAGTAATTTGTTGTATTGGCTTACTTACT
GTTTTTGTGTCTTCCAGATTTTATTGATATTGGCGTGGTCTGAATCTAGT
TATGTGATATCTCACGTACATGGACTGCAGCGGCAGAGCCCAGAAAAGGA
AACAAAGAGCATTATATCCCATTCATGTATTCATGATCAGATTATTGAGC
AAAGGAAAAGACCAGGATTCAAGGTTTATTCTGTGACCCCACAGGTTTAC
GAGAAGCCTGCTGTTTCTAAACCTATTCACAAACGAGGAAGGGAATTGCT
TGAAGCTTCCCCCTTTTCAGGTCAGCAAGACGAGGCAAAGCAACCCATCA
GAATTTATTTGAATTATGATGCTGTTGGTCATTCACCTGATCGGGACTGC
CGTAATGTTGGTGAAGTAGTGAAGGTTTGTATTATCGTGTCATCATCTAG
TATAAAATTCTAGTAGGGTCATGGATCATAACAAACATAAGTATGCATTT
GTTTTTGAATTTTATCTAGCTTGGAGAACCTCTTGCAACTTCTCATACGG
AAACACCTTCGTGCAATCCTCATGGCGATCCTCCTATCTCTGGTGACTGC
TGGTATAATTGCACTCTTGCTGATCTAGCCGGGGAAGACAAAAAATATCG
TCTTCGTAAGGTACTAAGGTGCATGTTGCTAGTTAATCTATACATCTTCC
TTTAAAATCTTTGTGTGGTGCTGAAAAGTATCATACATTAACAACTACAA
CGTCATACACTGATACTATGAGGTGTTTTGTCATGCCAAAACAAAACGAT
CAGCGACACGATAGTACAATGTGTAGCTACTCGGCACATGCATAATGTAG
TACGTCATTGTCAGCTGTTTAATCCTGGAAGCTTTTATGAATGCTTTGCA
TGTATGAATGCTATTACAAGTGTGACAGTGCTTTTTGATTACATACTCTA
AGTTTTTGGTAAAATAAATGCTCAGGCTTTAGGGCAGACAGCAGAGTGGT
TTAGTAAAGCCTTAGCAGTTGAACGTGTTAGAGGGAATTTGTTGCTGAGT
GGATATTCTGCATGTGGACAAGATGGTGGTGTACAGCTTCCAAGGGAGTA
TGTAGAAGGTAATTAAATGCATCAATTTATATTTGTTACTTCCTAAGTTC
CTATCACTTTTCCTCTTTTTCCCACCTATATTGTTTAGATCACACTCCCC
ATAAACACCCATTAATGTCTTTGTCATTATGTCCCAAATTGATCCTTCAC
TGTTTATTGTGTATGTATTCTCCAGAGGGTGTTGCTGATGCTGACTTAGT
TCTTTTGGTAACCACTAGACCTACAACAGGCAACACCTTAGCCTGGGCAG
TGGCATGTGAGCGTGATCAATGGGGTCGTGCCATTGCAGGTACCTCTTCA
TGAATAAAACTAATTTTTGGCATCTTCTCAAGTGCGAAAAAGCTAATTTC
TTTAGTTCTGTATTCAGGTCATGTGAATGTTGCTCCTCGCCACTTGACTG
CTGAGGCAGAAACCTTACTTTCGGCCACACTTATACATGAAGTGAGTTTG
TCTTATGATTAGGGTATAAAATATCTTCTTATACTGACTTTTGCTGGTTA
GATTAATAAATGTAGAGCTTACCCAGGTGATGCATGTTCTTGGATTCGAT
CCTCATGCCTTTGCACATTTTAGGGATGAAAGAAAAAGACGGCGTAGCCA
AGTAAGTTCAATTGTGCTCATACATCATAACTCATAATTTGTTTAATCTT
ATGATTTACTTAGCATTAATCATGTACTGAAATCTAGATTTCTGTATGAC
ATAATGTTTTGCGACAGTGATGGAATATCGAAATGATGTATGAATTTCCT
GGATTGTTACCTAGATGAATTATAAAATATGTTTAATCACAAAATTTTTC
CATTTAAATCAAACAATAAGGACTGTGTATTGTTTTGTAACACCTGGTAT
ATGTTGATTGTTTCCTACTTGGTATAGACTTTTGTATGAATTAATAAATC
CACCCTATAATGTACTCTGATTTGGCAATATTAGAAAATCAAATTAAAAA
CATCATCAATCTGTGAAATCCCGGCAATGGCTGTTAGTCTTATGTATTTA
TTTTTAAAATCGACCAGATTAAATCTATCTTTAATGTGCAAAAGAAATTT
TACTACAATTCTTTTCCTTAACCATCATGGCTATTTAGGAGTATTCTCGC
TCTTTTCTTGCTGTTCCTTCTATGGAAAAAAGAGAAGGCTTCTATCATTC
ATACTGATTAAAGTATAGAAAAGACGATTGTCCTTTGGTCTTATTATTAT
TATAACCTAATTGGTAAAAGCCTGTCTAATCAAGCCTGAAAAATGAATAA
GGAAAGGGTTACTCTTTAAGAGACCATATGCTGTACAGATGGTCTTTGTT
CATTATTTTACTATATTTAAGATTTATATTCTGCTTCATCCCCATCTCTG
ACTTCTCCAAATATCACATTATATTATGTTGATAAAGTTGCACATACTTC
TTAGCATTTGGTTATACTTGTGAAACTGTTTTTTCTGGTATTAGTATTAC
AAGGCTTTATCTGATCATTATAAAAGTCTAATTAGTTCTCTGGCATATCC
TTTTGAATTGAATATACCAAATAATTATGCTCTATGAAACTGTTTTTTCT
GGTATTAGTATTACAAGGCTTTATCTGATCATTATGACAGTCTAATTAGT
TCTCTGGCATATCCTTTTGAGTTAAATATACCAAATAATTATGCTCCCTG
TACAATTTTGCTAAATGTTAATCTTTGTTTGGTATTTTTGGTTCTTAGGT
TACTGAATACGCGATGGATGAGAAACTTGGACGGATGGTAACACGTGTGG
TGCTTCCTCGTGTTGTCATGCATTCACGCTATCATTTTGGGGTATATAAT
TCCTTTTCTCATCCTATTTTCTGTGTATCATGGCACTTTGGATCTCGACA
AATACATGATATGTTGACCACTAAGTGCAAAACTTTACAGTTCACAAAAA
TCAGTGTTTGAGTTTCGCCCAACACCATAACTGAGGAACACGCTGGAGTC
CTAGATAATAACATAAACATTACTCAGTAATAAAATATATGTAGCTCCAT
TAAAAACTTGAGGTCATTCCAGATATTTTTAAAGCTAAGAAAAAAAACAC
AACACTGAACGTTTTATATATTCTTTAAAGCAGAACCTCTCAGTTCTTCC
AAAACTAGACATATTGAGGCTTATTAATTGCTCTGTTGAGGGCATAACAT
TGCTTCCACTATGTGCTCAATGCAGACCTTTTCTGCGAATTTTACTGGTC
TAGAATTAGAAGACGGTGGAGGCCGTGGAACGTCAGGTTGGTTATACACA
TTGTTTTATTCTTCATATAATCTTTTAGTTACTTGTCAAGATGTTACCAT
CGTTTATATGAATTTCTGTTTTAGTTTTTATAGATTAATAGAGAATAATG
ACTTGATTGCAGGTTATTACAAAATATAACATAATCAACATGGTTATATT
TGCAATTGCATCTACTAACTGGAAGTTCGTTATGTTCCACAGGATCCCAT
TGGGAAAAGAGGCTTCTGATGAACGAGATAATGACGGGCTCTGTGGATAC
AAGGTCGGTTGTTTCAAGAATGACACTGGCTCTGCTAGAGGATAGTGGGT
GGTACCAAGCTAATTATAATATGGCTGACCGGCTTGATTGGGGACGCAAT
CAAGGGACTGACTTTGTTACCTCTCCTTGCAACCTGTGGAAGGGAGCATA
TCATTGCAACACAACACAATCATCTGGATGTACATATAACAGGGAGGCTG
AAGGTTACTGCCCAATTGTATATTACAATGGAGAACTTCCTCACTGGGCT
CGTTATTTTCCACAAGCTAACAAAGGTATGTTCTATATTTAAAGTTTTTC
CTACAGTTGCTGATTTCCAAATAGGGCAAGGGCTTACATATTTGGTCAGA
TTCTATTGAACTTAAATACATTAATTGTGATGTTTCATGATTTTTAGTGC
AGTATTCTGTTCTGAATCGACTTAAATGATGAATACACAGACATTAATAA
ATTTTTATGAAAAAAGAGTAAAAGAACACATAATTCACCAACCTACAATA
TATGACACACTTAATGACTTATCTTTGCCTTTTGGTAGTTTTCAATATGT
TTTTAAACTCTTTCCTGTGAAGAAATTAGAAAGATTTTGCATTAAAATTT
ATTGTATTTTCAATTTGGTAAATTTATTCTTAGCTTTATAAGACAAGTCA
TATCTTCTGAAGTTACAAGCTTTTCACCCCCTTTATTGAAGACTTTTGAG
AGAGAAAAACATCGGGGCAGGCGGATATGATATATCGTCTATTTCTTCTA
GTTTAACAGACAATCTTATGCAAATTAATTTGGCAGGACTGAATAATTTG
ATTGTGGACCATTTTTTCTAGTTTCTAAGGAGTAAGGAGTAGAACTTTTA
GACAAATTTTGTGATTACTTCTAGGATATATTTCAAGATCATTCAATATG
CATCAGTTATATATTTTACCGAGGATCTTCATAAAAAAAGCCGCTTTATT
CTGATTGGGATGAACAGGTTATGTTTGAGTTGCATGTTTCTGGAATGATC
GTTATGATTATTTATATATTTTACAACTTGAAGCATGCAATATGTTTGAC
TAGCTGTTGACTTTAAGACTTTTCAAACTTGTATCATCACAGGTGGACAA
TCGTCTTTGGCCGATTATTGCACTTATTTTGTAGCATATTCAGATGGTTC
ATGTACAGATGTTAACAGTGCAAGGCCACCGGATAGGATGTTGGGTGAAG
TAAGGGGAAGCAGCTCAAGGTAAGTTTTGCTCTAGGATCTTATATATGGA
TTAGATTTATATTTTTGTTTTGATAGTTATTATGTTTATGATCTCTGTAG
GTGTATGGCCTCATCATTAGTCCGTGCCGGGTTTGTAAGGGGATCTAGTG
CTCAAGGGAATGGATGTTATCAGCACAGGTGCAGAAACAACTCATTAGAG
GTAATCTCTCTTAACTCCAGTGTGTGATTGTGCACCCGCATGCAGTTTTG
TGTTTGTCAATTGTAATATCTAAGGCTCTTATATATTCCATGGCTACTTA
GTGAAGGCTCACTAAACCCACAATTTGACAGGGCTCGAGCTTATATTTTA
ACTGTAGTACTCATCTATGCTGTGAATCGTAACAGTTCTTTAAAAGAAAT
ATCATTCAACTTCATGGTATTGCGGGCTGGATTAAGATGCCATCTTAATT
ACTCTGCTTTCTCTGTATTTTTCATTAAGAAAATCAAAATAGTAAGAAAA
GACGCCCACTTAGAAATACTCAATAGTAGGTAAGCGGGAATGTGGAAAAG
GGGAACACACACTCTTTGCCTTGGAAAAGGAAGTTATATTTGTCAAGTAT
CAAATAAAAAGGGTAAAGGAGTTTCCCAGGTCTTGGAAAGTATATTACCT
TACCTTTTGTGCAGTTCCTGCCCTCCATAATCTGAATTCTGATCATTGTC
TTTTTAAGGTTTCTTTTGTGTTCCTTAATGACCAGACATCTCTTTTATAA
TGGTAACTAGTCAATGTGCATTACATCAGTACTTGTATAGTTGAATACAT
GTCAGTACAGATGATTGAACCCGCCCTAAGCGCCTAAGCCGTAAGATTAC
AATGTACAGCAACTGAATATGCATGCTGTTTGTTTGCACATGTTCATACA
ATAAAAGATGTTCTTTTATCCTCTACTCATTCATGTCTTGCTGTAAATGT
GCTTGTTTTAGATTGCTGTTGATGGTTTGTGGAAAGTATGCCCAGAGGCA
GGTGGACCAATTCAGTTTTCTGGATTCAATGGTAATTCACTAACCAATCA
TCTTCCCTCGATCCTAGTCAATGTCCCATTCTATGCATTCTCGAGACTTC
TTTGTTATTGATCTGTTTCTTTTATGCTTTCCAGGCGATCTGGTCTGCCC
AGCTTATCACGAACTGTGTAGCACAGATCCAGTTCCTGTGTCTGGTCAGT
GTCCAAATTCTTGCCATTTCAACGGAGACTGTGTTCATGGGAGATGTCGT
TGCTTTCTTGGCTTCAGGGGCCACGATTGTGGCAAACGTAAGTTCCTTAG
CTTCAATTCGCCTCTCTACCTTGATCAATCTCATATTCTGAATTCCAGTA
TCCTGCTCTTCAGATTCTTATTAAAATCTTTTCTGCAGGTTCTTGCCCAG
GCAATTGTAACGGGCATGGAAAGTGCCTTGTGGATGGCATCTGTGAGTGT
GATAATGGTCACACTGGAATTGATTGCTCTACTGGTAACTTTTTTCTCTG
CAAGTGTTGCTCTGTGAATTCGTATTTTTCATACAGCAATCAGCATGCCA
TAATTTGAGTTCTTCAATTGTTCAAACGATTACAAATTTAGATAGTTGTC
GGTACTCAGTCAACAAGACAAGTTATAATGATGAAAGCCATATTTACTAA
TGTGTTACAACAAGTCATAACCATGGAAAAGTAAAGGAAAAAGAAAAGAT
GAAACTATATTCTCAAGTGGCCAGATGCAGATTAGCTAGTTAGGTGATTA
ATGGGCATGGGGGTTTCAGGGTTTCTGATATAGGAGCATATTTAGTATTT
AAGCATCTAGGCACTTTTAATGTGGATGCTAATGAACATTTTTTAGATGA
TACATCATGGTATGATATTCGATACTCTCTTTTGGACTTTACATTGCGTG
CGGTTCTCTTTAATCTTTATATGTGTATTAATGTTAATGCTACCTACCTT
CTGTTAGTTTTTCTAAATTATAAAAATCAACATTTGCCTCACTTTTAAGT
AATGTGCTGGATCTGACACAACATTCAAATAGGGAGGCTTTGAAATGCCC
TCTTAATGCATCAAAGAGTTCTTTAGGCATGCAGACCTGTTACTCAATTT
TCTTGATTATTCAACTTAATTTTGCTCAACATGTATTGGCATGCAGCTGT
TTGTGATGAACAATGCAGCCTTCATGGAGGAGTCTGTGATAATGGAGTCT
GCGAGTTCCGTTGTTCTGACTATGCTGGTTACACATGCCGGAATAGCTCC
ACTATTTCCTCCAGTCTGTTAATATGTAAAGATGTGCTAGGGAAAGNACA
TTGTGCGCCTGGTGAACTGAGTGTACTTCAGCAACTGGAAGAAGTCGTTG
TCAAACCCAACTACCACCGTTTATTTCCCGGTGGTCCTCGGAAGATTTTC
AATTACTTCAGAAGCGGGGACTGTGATGGAGCTGCAAGGCGGCTAGCTTG
CTGGGTATGTTGCCTTAATTTTGTATACTCCTTGAAGGAAAGCCTGATCT
TGATCATATTCCTTTTATGCTTATTTAACTATGCTTTACTTCTTTTTCCT
GTGGGACAAAGCCCAACATACTACCCCCAACTCTTAACTGATTGGTGAAT
GCTATAATAATAGCATACCCAGAGGTTCTCCAACAAAATTGCTGCATAAC
TAATTATTTATTATCTATTTTGTTTTCTTACCGCCACTTCTTTAACATAA
CACTTCTGGCGAAAACATTGAACTTAAGGCCTCTTATTGGACATAAATTG
TCTCAGTGGAGTACAAAAATCATAATTACTTGCCAAAGGTCAAGTCATAC
TAAGCCAGGACTTTTGTTCAGATGATGGATGTACTTTGCAACTGTCTTTA
CATAAATATGACAGCATTTGTTATGCAGATATGTTACTGAAGGTGTTCTG
ATAAAAAATGCTGCAATTGTTGGTTTGAAAACTCTATTTAGTTGCATAAA
GTCTTAATTTTTCCTGGATAGCCAAGTTTAAGAAATAATTGACAATCATA
GAGAGCCTGTACTCTTGGCTGAGGAAAGTAAGCTTGAAAAAGCTGCATCT
CCACATTAAATTGTTTACGGATTGCATATCCATGACTAAAATGTTCCACA
GGCTGCTTCATTTTTGTAGCTGGTGTTTCATTCATTGAAAAGCCATATTG
GCTTTTACACATTTAGCCTTGAATTTAATCATATTTCATCGACTTCTTTA
CTACAGATTTCCATTCAGAAGTGTGACGGGGATGGGGATAATAGGCTGAG
GGTGTGTCACTCGGTCTGCCAATCATATAACAAGGCGTGCGGAGCGACAC
TTGATTGTTCAGATCAAACTCTCTTCAGTAATGAAAATGAGGGTGGCGGT
CTGTGCACCGGATATGGTCAAATAGATGATGGCTTTAGTGTCTTCTGAAG
CAACATCAGGCTAGCAATAATTCTGAAGGGAATTGCTGTAAATTATAGCC
AGAATCAGCCCTTGGCTTATCTATTCTTATTTTGCTCTCTTCGAAGGGGC
GGGGGAGGAGGGCTGGGCCAGAAGACAGGTTTGCACAAGTACACGTGCAG
GTTGAAATTGAGTAAAGTCCGGGAATCAACTCAAGATTCATATAGGTGGG
AAAAATAACAACTAGCCTATCAAAGATAGAAAGTCAAATTGTAGAGAGTG
GAATACTATGGAAATAGGGAAAATACAAAACAAGAGGATAGACTTAAGGA
GGGGAGTGAAGATGAGGTTTAGGCCGAAGGCCTGAACCAAAAGCAGCAAG
CTTCATGTATCGCTGAATGTTAATCTTCACTATGGTGAGCTTTTATATTT
TTTGTGGGAGCTCCTTGGGTGATTTATTGCAAATCAAATTGTAGTTCTGG
TATTTGTTGAGTTTACATGTGATATCATTTGGTCTGTTATTAACTAAAGA
AGGAAATACAAGAAATGTTGGCATTTGATATTTGATAA