Resource Type:
Gene
Organism:
Name:
DCAR_016063
Identifier:
DCAR_016063.gene
Locus Tag:
DCAR_016063
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_016063, is a part of gene, DCAR_016063. |
| The genetic_marker, MK004862 K2306, is located in gene, DCAR_016063. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_016063 | DCAR_016063.mRNA | mRNA | DCARv2_Chr4:933101..945012 |
Sequence:
GTTGTTCGGCTGGAGAAGCTCCACAGCTTAGAAAAAGTTTGGTCCAGACG
TGTAAATTGGTTTAAAGCTGGAATTTAAATTAGTTTAAAGCTGTTTATCC
GAACCAAATCTACCAAGGTTGGTTGGGGGTTTAGATTGGAAGATGTTGTA
TTCATGCGCTCTCACAAGCCACTTGTTGTTGAGCCCCAACACGCTTTCTT
CGCCTCCTACGTTTCACACATTCAGTAAGTCTTCGTAATCGGCGTTGAAA
TATACGTTATTCTGTTTCATAATTTTATTGTTTTCATTTTCTAAGGAAGC
AAATGCCAAGTGAACAGGAGGGGGTTTTCTTTGAGGGGACTTCTTGTTAC
TGGAGCTTCTGCCATGCCCTCTTCTTTAATTGCTCAACCTCATCAAGGTA
TCTGTTAACCAGTTTCTATTCTTTGCATATATAGACACACACAGTGACCG
AGGCAGGAAGATCCTTTTACGGGGCCGGAATATAAATACTATTTAAATTC
AAAATATCATGTATTAGATTTTGTATTACCCCGTCTCATTTTAGTTGTCA
CATTTGGTATTGTGCCGGTCAAATTGACCAAAGTTTGACTGAAATTTACT
AATATTTTATCAATTGAAAAAATAAGAAAAATATGTCATTGGAAATAATT
TTTAATCTTCTTTAATATGTAATTTTTAGTTTTTTAAAATGATGAAAGAG
TGACTTATAATCTTTGGTCAAAAGTTAGTAAATTTGACCAACAAAAATAG
AAATGTGACAACTAAAATGGGACGGAGGGAGTAGCATTGGTGATAAAAGT
CCATTTTTTTAGATTTTTATGAGAAAACTTAAACCCTCTTCAGACCTTTC
ATTATGAAAATTTAATCAGCTAATTATCAAGCCATCAAGGAGGATGGAGA
CTTGAGAGAAAAATAGGTACACGAGTTGCAATTAGAGAGACCTATAGACA
CGACAGAAAGAGTAAAAAGATACTCCCTCCGTCCCCTTTTACATGTCCGT
TTTGAAAAAAACACACATACCAAGGAACAATTATAAACTTTTTTCTTGAA
TACATGTAATTAATGTTTTGAAAATGGTGAAATACCCCTAATAAATGTCT
TGAAAATGTGAATTCAACCAAGTTTTAAATTGTATTACCTTTAGAATCCA
AAAAGACAAGAATTGTATTAACTTTTGGAATCTTTGAATCTGATTATTTA
AGTTATAATTATATTGTATTCTTTTAAGTGTATTTTTTCTATGATTGTTA
TTTTAAATATAACTTTTGAATATAAGAAAATTATAAGACTGAATCGAATA
ATCCTAGAGACGCCACTTCACCGTCCTGCATCCTCCTTTATATTAATAAA
AAAATAAAGCTGTAATTTTTTCAAATTTAATAATAAGATAAAACTATAAA
TTTTATAATTTATGGAATAAGAATCGTACTTCTTTAATAATTTGTATATA
AATGTATAAATAAAAAATAAGAATTGTATTACCATGAGTCCTAAATAAGA
AAACGAATTGTATTCGTTACGGATTCTTTTTCTAGATTCTAGAGTATTAC
CTTTAGAATCCAATAATAAAAGAATTGTATTATCTTTAGAATTGTATGAA
ACCTGATTTTTCGAATTATAATTATATTTTCTATCCGAAATTTAAGAAAA
ATCAGAAGACTGAATCGAACAATTCTAGAGACGCCCTGCATCCTCCTTTA
TATATATATATTGATAAATACAAGTAATATAGTGTATAGGGACTCATTAC
AATCAAAAATTAACACACATCATTAATTTTGTATCTAATTTTGTGAATGG
AGCATTTTTCTAATATTATATTAGCAAAAAAAATAATAAAAAATTTCGGA
GGGGCCAGGACCCCCTCTGGACCCACTCCCTCCGTCACTGTATATATATA
TATATATATAGAGTCTTACTCCAATAGAAACCTCCTTATTCTAGAACCTA
AAAACCAAGCTGAAATATCACTAAATCTTAAAGCAAATTCCACTTAATTC
TTAAACAACCCCATCTCCCCCTCCATCTTCACCAACCCCACCTCCACATC
CGCCATTGCCACCACCTCCGTCATCGCCTCCTCCATAACCACCACCACCT
CTATGCCGCCCGCCCCCTCCATAACCACCACCTCCATCTCCACCTCCATT
ATTTCTCTAACAGCACCATCTCCACCTCCATCTTCATCAGCCCTATCTTG
GTCGTTACTTTAACCTCCTTCATCCCCCGTTCATACTTCTTTCTCCACCT
CGGCTTAACTTCAAAACGCGGCGGAGCCGTCACTATTCCGGCAATGCTCC
AACCCCCTACTTCAAGCCGCCCAGACCTCCGCTACAATCATCCTTCCTTC
ATCTCCACCTTCACCTCCACCATCTCCACCACCATCTCAATCGAAAACGT
GAACAGATCTGAATATTGCTAGAAATTCTGGGCAGTTTCTGCAAGTTTTC
ACTAATTTCTGCAACACATATCACTAAATCCAAAAGAGAATATCACTAAA
TTGTACTGAGAATATCACTAACTTGTATTGGTTTCTAGTTTTTATTTTAA
GAGTAGTTTCTATTTGATCATGAGCCTATATATATATAGAGTCATGTTCA
ACTATAAACCATTTTAAAATAAAAACTAAAAACCACGGCCCCAGCCCACC
CAATTAAACCTAGCCCACTACTTTAAACTAAAACTGCCCCCGTTACAACT
GATACATACGCCTATACATACAAAACCATTAGAGCGCACTGACCGCAAAC
CCACTTTCTCTCCATTCTTCATCTTCTTTGATTTTAAGATGTAATTACAG
TGTGTTATTGGTGTTTTGAGCAAATATTTTCTGTTTTGAAGTCTGATATT
CTCGTTTACAGGTGATTTTCATTTTGAAACACAACATATGTGAGTTTCTG
CTCTGGAGTTCATCAATATCACTAATTTATAAAGCGAATATCACTAATTT
GTAAAGCGAATATTACTAATTTGTACAACATAAATCATCAATTTTTATAA
CTATGTTAACAGTCACCCCACCTCTTCCACCAACTTCATCTCAATCTCTG
CCACCACCTCCGACTCGACTTCTACCACCACCACTCACCTCCACGTGCTA
TCTCAGCCCTTACCTCTGTCATACCTCCACCTCCACCTCCAACTCCGCCA
TCTCAACCCCACCCCCGCATCCTCCATGCCCTGCCCCCTCCATGTCCACC
GCTTCCATCTCCTCCACCGCCACCACCACCAGAATCAACAAGCAAGAATA
GATCTGGAAGTTTTCATTCAAGTTCTGAAGACTATAACGAATATCACTAA
TTTTTACAACGAATATCACTAAAATGTACAGTTGATATCACTGAAATGTA
TAGTAGTATCATTGAATTCTATAACTATATCAAAGCTTAAACAACACTAA
AATCCACGACTGAACTTTAGTCATTTAAGACATTAAGAGAGAGGTCGTCA
AAAAAGATTGGGGGAGGGGAAATAAAAGATGGAGGTGATGATGACGGGGA
ATGAACGGAGGTGGTGACGGCGGGAAAGGAAGATGTGATCACGAAGAATA
TGAAGGGTGGGGCTGGTGAAGATGATGGCGCATCAAGGTTAGAGATGGAT
CGACAGGTGGCAACGGTGGTGGGTTTTAGCTCAAATCATAGGAGGTATCA
CAGGAGATAGTGGGCTGTGAAAGTTGGTGAGACAACTGGGTTTACTAAGT
GCAGGTGTGTGTTTTACTAATTGCAAGTGCGTGGCGTTGGCAGATGATTT
GTTTTAGTTGAGTGCCTTTTGTAATTATAAGAGTTTAAGTAGTGGTTTCT
AGTTTTTAATTTAAGTTTGGTTNATATATATATATATATATATATATATA
TATATATATATATATATATATATATATGTATGTATGTATGTATGTATGTA
TGTATGTATGATCACCCAACCCCATAGATGCTATCACCATCCTCTATCCT
CTACATGATATCACATACCCGATATCCACTCTGAACCCCACTTAATCCAC
CTAGTGGCCCAATAGCGTCACTAAGGCTCCGGAGAGGCCCTAGTGGAGCC
CTAGACAAGCTGAATAGCCAATACTAGACCCCAGCCGCCCACTAGACCCC
GAGGTCCATCTGCACAAATATCTCCATCTTCTTAAAAGCATTGGTTTGGA
TTTTACTTTATACTAGCATAAAAGCCCGTGCGAGGCACGGGACTCTAGTT
TTTGTTGTGTTTTAAATACTATTCGTGTGTCATCATATTATTTCGAGCAT
AACTATTACGTCTTATTTTTTAACAGAATATGTAAATATGAAATGTAACA
TTTGCAATCTAATAGCATTGATAGTAATAATATGTACTATATTTAAAAAA
AAATTATGGATCAAAAACAACATTTGAACTGATTTTTCTATATTCAAATT
CGTTAGGATATAGAGGCCATTATCATATTATCTACATGTTCAAAATTATA
TTCGAAATTAATACTGAAACTTTTAAAATTTAAATATAATATACCTCATT
AAAAAGATCTGTAATTTATTACTGAAAATTATTAAATTATTCCATCAAAT
ATGAAAACTTGTTCTTGATATGTGAATTACGATATCCTCAATCATGATTA
GATGAAGATGTGTGGTCCGCGTTATTTTATATTTATTTCTCTTTTTTTGA
GCATACGTTTGTGTAATAGTTAAGTGATATATGATGGACAGACCATCAAC
ACATTCTTTTTTATTATATGTTGCACACACTTTGTATAAATAATAATTGA
AACATATGTAAAAGACCTACCTTACTTTATTATAAAAGCATTAATTGAAC
TACTAACCTTATAATTGTACCCGAAAAATTCTGACACGTTTGATGTGGCT
TACCCTTTTAATTTTCCAATTATATAGTACTTCAATGCCTTATATATTTT
TTTTGTTAATTTAAAATATTAGATGATTATTACTTTGATACCGCGTGTTA
TAATATTGTGTTGTTATAAAATATTAATTTTTTATCATTAGTTTTCTGAG
CTTGTTGACTAAGACTTTTAATATTTTTCATGTAATCTTTATAAACCAGA
TCTCAAATAGCAAAAATAGAGTAGATGTTAGTTAGGCACCATGGAGTTCA
TAAAAATAAGAAATATTTAGTTTAATTAGTCGTATAGTTACTTTTTTAGC
TTTGTGCAAACTCACATTTTTAAATATTTTGATACTCTTATTTCTTAGGG
GTGAGCAATGTAGCATATCATGTTCAATTGTTAAAGATCAAATCAGGTGT
TCGATATTCTGGATTATGGAAAACTATTCTTGTTCTATTCCCGTCTAATC
AGATATTAGTTTTCATCTTATCGCGTCGGATTATCCATTCCAGAATTAAT
TATATTTATAAGTTTAATTTGTGAATGAATAATTAATTTAATTATACTTT
GAATCATTTTATTTAACTCGTATGTTGTACATTGATGTATGGCATATTAA
AATTATAGTTTTAATACTTTAATATTTATATAACTTATTTCTCTGTGTTA
TTTTATTTTAAGCAAATAAAATTTATAACTCAATTCTTTTTAGTAGGTCT
CGTAAACACGTTTTATTATTATTTGGTTGACTTTTGATAACATAGAATTT
CTCTAAATTCACCTTTATATCACAAGTTATAATATTTCAAATTCATATAT
CAACAAAATCACATCATTTAGACATATTTTCTAACACCAAATTTGATGTC
TTTGTCACTATTCTTATATCTATAATTTGTTTTTGAAAAGATTTGGTTAC
ACGTCGAAATCTGAATTCATAAGTTTAAAATAAAAAGTAATCTAAATAAA
AATATTTTTCCAGTTATCTTATTTCATGTTCTTCAAAATATTGTAATTTT
TTTATAAGTCACCTTTTGTAATTAAAAAAAAAATATGACATAGTACATGT
TGAAAGTCCATCAATTTTTCCTTTCAAATATGCTCACCGAAATCTTAGTT
TTTGTGCTTATTTCTCACATTCATGGCTTAAATTTCTCTAATATTGTATC
GGTACCCGTTTAAAGTATTAAGTTAGATTTGAATTCGTCCAATTTTATTC
AAATATGAATTATATCCATTTTTTGAAGTCTGAAACATGGCTCGAGCCCA
ATTGCTCAAACTCTTTTTCAAATTTAAATTTATTACGTAAGTAATTAATT
TATGGATATTAATCTATCATGTAAAAAACATATGAGGTTTACCTGAAATA
ATAACTTATCTCAAATAGATAAGATATTGAAAAAAATATAAATACAACAG
TTTTAATGTATGAGTTTAATGCTTTTGAATAAAAAAATTAATTGTATGTG
TAGCTTAAGTGGTTTCAGTGGTGTAATTGTAATGAAGAGGGCTTGGGTTC
GAGTCTCATTAATAATATTTTTTTATATGTATGAGGAGGAGTTAGGTTCG
GAGTTAGGCTCGGGTTCGGAGCTAGGTAATTTATTTGCTCAGGAGGGAGG
CTTGACACGAACGTGTTGGGGTACTATATATATAAGTAGATTTGGTAGTT
TTTACCAAAGTAAATGACAAACCTTTAAAGGGAGAGAAGGAACAATGAGT
AACACTTTAGTTTCCGATCTAAAATTTGATTATATCGTAATTTTAAGCTA
ATAACCTTTCAATACGAATAAAAGTACACTTAAAAATATATTTAAGTTTC
TGCATGTATTTATACAAGATTCGACAACATTTAATTTTAATAATTTGGAT
AACTTTCGATATTAGATTGGATATGTTAAGCTTAGTTGATATTAGATTTT
GTGATTCTAATGTGAGTCAATAATTTTTTTTTTATGAAAAATGATGTATT
ATTATGATGTTCTTTTTTGTTTTTTCTCTGAAGATCGTTCTTTAGGGTCA
TGTTCTATGGAGTAGTTGGAGTATTGAAGTACAATTTTGGATAAAATATA
ATCTAGTCATTTAAATTTAATTTTTTTTGTTCTACAATATTTGTAAACAT
TCGAGAACCTACAGATTATGTTCCACAACATAAATTTTATCAAAACATAA
AACAATTACTTTTATAAATCGTAGGGCACTATGTTCAACAATATAACTCA
TAAGCTGAACAATAAACTTAATGCTTGTTAAAGTTGAAAGATATTAATAA
TTAATTTATAATTAAGTTTAAGACTTTTCATAAATGATAAATCATATATT
AATTTATAATCAAAGATATTACTTATGATTAAACTAAAAAATTATAACTG
GTAGTCAAATACTCCAATGTTTTATTGTGCTCTATAGAACTTGACCCGAA
ATGACAAAAATTCTTATGGAGACCGCCTTTCATCGGAGACCGTGGAGACC
ATATAGGTTTTTTTATTAAAATATTGCAAAATGTATTTCTTCACTAAATA
CATCATATATATAAATAGGGTCTTACTCCAATATAAACCAAATTAGCCTA
AAAACCTAAAACCACTAAGTACACTCCCAATTTTGCTATGAGCACTCCAT
AATTGCTAACTGCACTTCACTTCATATTTTTATTTTTAATTTTTTTAATT
CCCGGGGGACCCACTACTGACGTGGCGGCCACGTCAGCACTTGTGAACGT
GGCAGTTGACATGGCAGTCTGGGTGGGACGAGGCGGCATGGGTGGACCCC
ATTACTGACGTGGCAGGTGACGTGGCGCCTGGTGGGGTCCCATTGCTGAC
GTGGCATTTGGGTAGAAAGTGTAAGTTTTGGAAACTTGATGACAAAACTA
GGGGTTGCATATTGTTAGTTTTAAAAATTATGAGGAGATATTTGATCATT
TTAAAACTAGTTTTTAGGTTTTTAGGCTAAAAGTGGTTTGTATTTGAGCA
TCTCCCTATATATATTTGAAGAAATCATGTTCTTGCAAATTTATTTTTAT
AGAAATTCTATTTTTTTAAGAACTCTCTGAATGTTTATCTTATAGGATTG
GAGAGATTGCCATTCAAACCAGAAGGTTACAATTTTTGGAATTGGCGAGG
TCACAAAATACATTACGTAGAACAAGGTGAAGGATTTCCAATCGTTCTTA
TCCATGGTTTTGGTGCGTCTGCATATCATTGGAGGTTTGTCTATTACTTA
TTATCCTTAAACTGTGCAACAGATTCTATGATTGGTCTTCTAGGAAGCAC
AGACTCAGATTGGCGACGGTGATATGGTGAGACGGGATAGGGGACTTGGC
AAAAAAAATATATTTGTACATGTCAACTATATCGTTCATAATAGTGTAAA
CTTCAATTCAAAGATGTATCTGTACTTTCATATATGAAGGAACGGAAGTT
ATATAAGGAGGAACAGGAGTTAGGAGACGAGATCTGAGATATGAGAAAGT
GGTTGTACCATTAGGTTGACAACAGGTTATTTGGGCAGTTTGTTAGGTGG
GCCGAGTTGCTCGCTTGCAAAGCCGTTTCATAGGCAATTCAACTCCCGTT
TGCATGCCACATGGACAGTATGACACACATATGCCAGCCAGCCAAATTAA
AGAGTCTGTGCTTCCTAGTTGGGCTATGCTTTCCTAATATTGACAATTAT
CTCGAGCTTGGTTTTTTAGAGCCCAATAGTTTCTGGTTGTTCAGAAAGAT
ATTCTGTACTCTGCCGTATTTAGGTTTTGTGTACTTAATTGCAGAAAGAG
TACAACTGCACACCGAACCATGAACACTGCTTAATTCGAAAATTGCCTTG
ATGTTGAGGCAGTTAATTCTAAACTACAGATATTTTGGAGCATGGTCCTC
CAACTTTTGTAATGATCCTATTGTTCTTTTCATAGGTACAACATACCTGA
ATTATCTAAAAGATACAAGGTTTACGCTATAGATTTGCTAGGATTTGGCT
GGAGTGAGAAGGCACTTGTAGACTATGATGCATTGATCTGGAGGGATGAG
ATCGTGGATTTCTTGAAAGTGATAGTGAAAGAACCAGCAGTTGTAGTCGG
AAACAGGTAAACTCCTACTAATAATCTGGAATCATTGATTATTATATTCC
AAGCATGAAAGTAGTAAGTTTAATATACCACAATTGATGTTCATAAGAAA
TCACATTCTCTAGCTAGGTATTAAGATCAAATATATCATGAAAGTTCATG
AATATAGTTCCTTTGAATGTTAACTATAGCTAGAACACATGTATGCAGCA
TCCTTACACAACTGGTCTGCATTTGCAAAGCAAAAATTGGTCTGATTGCA
TTATAATTATATTAAGCAGCAAGTCCCATTGTTCAAAACCGGTGCTCTAA
TAGCAGATAATAGGGGTTAGTCGGTGAAGACACTTTATAGCAGTTAATCG
GTTAGTTGGGGATTAATCCGAGTGTGTAAGTGGAGGCATTTTAATTTTAT
GAATAATAATAAATTATTGTTATAGATAATAATGATAATTAACTATACTT
AGTATTTAGGGTCATATGTACTGATAATTAATTTTTCTAATTAATTTTTC
AATTTTTTGAAAAAGTGTTAACTTTGACTAATTATTGACCGATCAATTTC
GATTTATAACCATTTCAACCTATTATTACCCATCTCACCCAACTTTTCAG
AAATTTGTTTTTCACCCGATTCGTCTTAATTGAAATCCCTCTTTCTACCA
ATTAATCCCGTTAATAGGTTTTTGAACATCGTGACCAAGCAATAAATACT
TATTCTTTGGACATGTTTCTTTGAAGGATTATAATCCCTAGATTATTACC
TTATCTCAAATGGAAAGGTTTTTAATCCCATGAATTTATTTTGATCACTG
TTTTAGTTCATTTCAATGGTATTAAAATATATTGTGAGAGAAAATATTAT
AATCCACATAAATGAATCAAAAAGGTGATTGCAATACAAGCCCATGAATT
CGAAGAAAACAATGTAGTTGTATGGGATTGTAGCTCTTTCAAACAAACAT
GGCCTTTGTTCGTTAGATTTCTATGCTTATTATGATCGTGCCAAACACAG
GTTTCTGTTCACTTTTATTATGCTGTTCTGTACTAAAAGTTAGTATCCGG
TGTGTATTTTAATTTTGTGGATTCAGTGGACTTCCTGGAAAACTGCTTGA
AAGAACAAAATTGCTTAAAAATTTAGTGAGCTCACTGATGGTCATTTTGA
AAACTGGTTAAATTTTCAGTCTTGGAGGATTCACTGCTTTATTGACAGCA
GAGGCATTGCCAGAACAAATCGTGGGAGTTGCATTGCTGAACTCTGCAGG
ACAGTTTGGGAATCCTATTGATGAGACCGTTGAACCCACGGAGTTATCCT
TCGGAAGTACCGTCCTAGCACCAGTGAAGGATATATTTCAACGCGTAGTT
CTTGGATTTTTATTTTGGCAAGCCAAGCAACCTGCTCGTATCGAATCCGT
TCTAAAAAGTGTAAGTTAAGAATTTAGTTAAGAAAATTTTGCATTTTGTT
CTCTAATTTTTTCTTATTTTGAGATTGGTAAAATAAATGATCAAAGTTTT
GCAATGACAGAAGTATTTAAATTTTTCTGTTTTATTCTATAGAATTTCCT
CACATTTTGTTGGTGACATTATCTGGATACCCAGATCATGTAAATTTTTA
AAATTTTGTTATAATATACAAATAGTTTCCCCTTCATACCTTGTACAATG
TCAGATGAATAGATCTGAATCAAATGACATACTTTCTGTAGCTGTTATAT
GATATTAATCAAATTCAGAAACAAGCATTGTTGTCACGGCGCTCGACTAG
TCGCGACTAGTCGACGACTAGTCGACTAGTCGGGTTTAGAAAATCGACTG
GAGAGGTCGACTTGCGAATTGTCGACTAGTCGGTCGACTTGGTCGACTAA
TTGATCGACTTATCGACTAGTCGGTCGACTTGGTCGACTAGTCGGCCGAC
AAGTGTAAAATTCAATCAAAAATTAAAATGAAAACAAATAAATTCTATGA
AACTGCTAAATATCAGCAATAATCAACATGTTAATCTAAGTTTATAGATC
TTTGTGTGGATATGTGTTTATGTATGCATAAGTTGATTAAAACTGAATAT
ACATGTAGTATAATCTGCTTATATATTGGTACATTTAAGGTGTGTAGTGT
GTTAATGTGTATACATGAAAGGGGGAAAAAATATGTTTGTAACTAACATA
TCTATTTTGTGATTGATATACATATGACTAGTTATAAGAAACCACGTATA
TAATGTATATATTAGTATATATTATTTAATTAATTATTAATTAACTTTTC
GACTAGTCAGCGACTAGTCTACGACTAGTCGACTAGTCGATAAGCTGGAT
CTCTATCGACTCGACTCGACTTATCGACGTGACAACCATGGAAACAAGAT
GAACTTATTAACTAAATTTTAAAACAAGATGAACTTTTCACGTTTAATGC
TATTGAAGGGTCATTATTGTCCCTATTTTCTGTATGTAGCATATATGGAT
ATACGCAATATGTACCTTTTCATGACTAGTCATTTCTATGGTCCTGCAAG
GTCTCTTCCTGCCTTGTACTGCTCTTTAGAGTAACAACCTCGTGTGTTAC
ATGTTTTAGGTATATAAGAATACCACTAACGTGGATGACTATCTTGTGGA
GTCTATATTACAACCAGCAACAGACCCAAATGCAGGAGAAGTCTATTACA
GGTATGATGATTGGTGGTATAAACCATCTTTGTTGCTTTGAAGCTTAAAT
TTATAGAAATTTCTGCAGGTTGGCATAGCTTAAAGTTCTCTCTTGTTATC
GATGTGAAATATCTTATTTTTAGAAGTAATCAGTGACCTTAATTGAAGCG
CAACGAATTAATGATCTAAATATAACTTTTTTAACTTTTTAATTTCCAGC
TCTAATCGTAGCATCATGTCCACACTCTACAGATTGATGACAAGGTTCAT
GTCAAATCAAAGAAAGTACACACTTGACAGCGTCTTAGGTAACCTATCTT
GCCCATTATTATTGCTTTGGGGTGACCTGGACCCTTGGGTAGGTCCTGCC
AAGGCTATCAGCATTAAAGAGTTCTACCCAAAAACATCCATCGTTAACCT
CCAGGCTGGACATTGTCCCCATGATGAAGTGCCAGAACTTGTGAACAAGG
GATTAATTGACTGGATGTCAAGTTTGCAATTCACATCCCCTGTCATGTTG
TAACCTCGTACGGGCCTTGGAGGATACAGTAATACACTTTCGAGTACTAT
GTATATTTAATGGTTGGGTGTGTTGAGTTTGAGGAAAATGTATAGACTTT
CGTATAAAAAGATATTATGAAATTAGAGAGAGAAATGTAGAGAGAATACC
TGAATCTTGAAGAGAAAGCTATCATTCATATTTGCTTACTCCCTCCGTCC
CGTTCAATAGTATACACTGGGGGACGGGGGCGCAGATTTTAATGCTTTAA
TAAAATATAGTTCGACAACTTATTTTTAAGATATTTTCTTTTTGTATAAA
AATACAACATTTATATTTTTATACAAAAAAAAAAGAAATTTTAAAAATAA
GTTGTAGAACTATGTTTTATAAGAGTCTTGAAATACGTGTCGAGCAATGA
AAAAGAATCATATATAATTGACTGGGACAGAGGGAGTAGTTGTTACAAAT
AGTTTACTGCAGTGTTTATATACAAACGCTAGTAATGTAACATAAAAGTA
AGCTAACTGACTAACTGCGTTGACTCTATTTAGAGAATGCCACTAATATT
TTGTTTGGCATAGGCTGATTTTTGTGATGTGCAACTAACTTTCTATCATT
AGTCCTTGATCATGGTCACTGGAACACCTTGACTTGAGTATTATCTGATG
GCAAATGTGATCCATGATGCATATATTAGGATTTATATGCATAATAACTT
TCTCATAGTCATAGTCAGAGTATGTCTATGTAGTCTCATAATAACTGTCA
TGTATATAGTATGTCGTTGGAAGAAGTTCATTTATTTGTTACTATCAGTT
GACTAACAATAGAGAAATTGGTGGAAGCTCCGCATACTTATCGGCTGTTT
CTATGACTTGCCACCATCGCCTACCATCTGCAATAATCACATACAATTTT
CATCTTAACTTATCAAAACTAGCGACTACTTACCATCATCATACTCCTTC
TCTTACGAATTCTTACCGACAAGAACCTTCCAACGACTAAGTTGATCATT
TATAATCGATTACCAATAGTTTAGGTAAGTAAATTTTCTCAATTTTGAAT
AACAAAAATCGTTGTTTATATACTGTATAAAACAATGATTAATGTAGTAT
AAATTAGTCATTCCTGTAGTTATAAATAGTGGTTCGGAAACTGGGTTTTT
AATTTGTGTTAAGTTGGTTTGTATTTGATCACTTGCCTATATATATATAC
ATACATATATATATATATATATATAGAGTACTACTCTAATAGAAACTAAC
ATAAAATAAAAACTAAAAACTGTAGCCCAGCCCATATAATTCTAACCATA
GTCCACTAAAAACCTAGCCCATCCCAGCCCATTCAACAAAAACTAATTAC
TACTGTCTCTCCCACACGCGCTGCATAATATACACACGATATACACACGA
CCTACTGTTCATCGAGCACCTAGCTACGCGAGCTACAGGTACGATTTAAT
GGCGGTTTCTTCAAATTCTCACCAGCATTCCGGCTCTAATTAATGATTTT
ACAGCTTTTCTGGAGATTTTACAAGCCAAAATCACACTACTACACGGAGC
TTCATTCACATAGCTGCTTCATTAAATTCGAGTCTTCAATCACAGAGCAA
ATAGGTGCGTTCATGAATTAGTAGTAATTGGAGCTTAAATCATCTTAATC
ATCTCGTATAGTTAGTGCATGCTTTCTTTTTTTTTTTTTTTTGAATTTCA
AGGGTTCTATGCTCTTTTACTGTAAAAACTAACATTAAACTACTAATGTT
GTTTCATAACAGCTATTATTTAGATTTTTTCACAGTGAAATCTACTTAAA
TATGGATAAAACTAGAGGAGATATGTTAAATTAGGGTTTTCTTATTATTT
TTTTATGATTTGTGATTTATAGTTTTTACTTCTGTTTATGAGTTGATTTT
CTTGAATAATCTGTTAATTATTTGTTTGTTTGTGGAGAATACTACTAATA
TCAGTTTTATTTAGTTAATTTGTTGAGTTTCTAAGATGTTGTGAATGTAT
AAGTGATATTATAAGATTTTGTTTCGTTATTTGTGACTTATGAGTTATTA
GTAATTTTGTTGCAATTTACATCTTCTTGTTGAGTTTATAACATTCTCTG
TTTGTGGAGATTAGTAGTTAATTTGTTGTGTTTCTAAGTTTACTATGTTT
GTTTAGTACAGTGGTGATATTGTGATTTTGTGATTCTCTGCTATTGTGAT
GATCATGATAAGTAGATTAGTGAGATTGTGATTATCGTGATTTGTAGATT
AGTGATATTTTGATATTGTTATTATTAGTTTAATGTTCAGGACAATTAAC
TCTCTGCGAGGTTGTCTATATACTTTAGCTTGATATTTTGATATTGTTAG
TTTAGTGAATTTTTATCAACGAAGCATGTTTCTAAGTATTACATTTAGTT
AGCCAGGCATGTTCACAAGGATTGCTCGCGGTCAGTAGTTTAGACTATAA
CCTTGAATTCTCTGAAGCGCGTAGCAACTAGCTAGAGCTTAATAAACTAA
TTTATATATACTGTTAACTAAAATAGGTGAATTCACTATTTAAACGTCTA
ACTAAAATAAGAGTTGGCAGTTAAAATTAGTTATATAAATGTGTATTCAG
TTAGAAAGGTAGCACATGACAAGTAATGTTCCCTTTATATTCCAGGCATC
TGAACGCATCTGAAATCTTTTTCCTTTAGAGATCATGTGCATTGTCTAGT
GTGCAGGCTAGATATATTTGTGTATTTTTGTGTACATGGGTGTTGACATA
TATACATGACTTAAACTTAAACTGTTAATGGGATTAGAAACTTAAAATGT
TGATTAGAAAAGGACTCTCTGTTTCTTTGTTTAATTGTTATTTAGTCAAG
CTAGTAGCCCTGTAATATGCCCTGTAATCTTAGATATCACTAGAATATAA
TTCACTTATCACTAAACCATAGAAATACATAGTAAATTATATATTTGTTT
AATTCCTTGTTAGTTAAATTACAATAAAAATTAGTCAATCTAGTTGCCCT
GTTTCTTGGATATCACTAGAATATACTTCCCCTATCACTAAAATATATTA
CATATATCACTAATATATATTAGGTATATCACCATTTACACTTTATACAT
AAATGTAAAACAGAACTGCTATAGTATAAACTCTTATTATAATCAATGTT
AAATAGTATAATTTCTTATTATAATCAATGTTAAATAGTTTAGGTATTGT
ACTAAACTATTTAATTTTATTATTACAGGTGTTCTTTCTCATTATTCTAA
TAAATTGTTTTTTTTAACAGCATTCTCACGTTTGCAATTATTTAAGTGAG
AAAGGAAATGTTTCTTTGTCAAAGAGAGTCCGCAAATTAAAGCCGATTTT
TTTAAGTATGCCATGACAAACCACAGAAGCTACAACTTTGTACGAGACGG
CAGAAAAAAACAATATTATCAATGTCTTCCTATCTAGAAAAGTCAGAGAA
GTTTTCAAAGCGTGACAAATCAAAGTCCGGAAAGAAGGTGACTTTTGCAG
AGAACCTCATAAGTTCATTCCATGAAGTAGCAAGAGTCAATTCTCAAGAA
GGACTATCGCAAAATAGTCAAGAAAAAGATCAATAGACTACTTCTGTTCA
AATTACTCACTATGCTTGACATACTATATTGGTTTTGCAATCTATTTGAC
ACATTAGCATCTGGTTTTAGATACTAGAAATTATTGATTACATGGCTTGA
TTGCTTTAATATGTAT
Sequence Length:
15766
Sequence Checksum:
396cc91b4e860064739a586fc4117839
View location in JBrowse:
Cds:
>DCAR_016063cds ATGTTGTATTCATGCGCTCTCACAAGCCACTTGTTGTTGAGCCCCAACAC GCTTTCTTCGCCTCCTACGTTTCACACATTCAGAAGCAAATGCCAAGTGA ACAGGAGGGGGTTTTCTTTGAGGGGACTTCTTGTTACTGGAGCTTCTGCC ATGCCCTCTTCTTTAATTGCTCAACCTCATCAAGGATTGGAGAGATTGCC ATTCAAACCAGAAGGTTACAATTTTTGGAATTGGCGAGGTCACAAAATAC ATTACGTAGAACAAGGTGAAGGATTTCCAATCGTTCTTATCCATGGTTTT GGTGCGTCTGCATATCATTGGAGGTACAACATACCTGAATTATCTAAAAG ATACAAGGTTTACGCTATAGATTTGCTAGGATTTGGCTGGAGTGAGAAGG CACTTGTAGACTATGATGCATTGATCTGGAGGGATGAGATCGTGGATTTC TTGAAAGTGATAGTGAAAGAACCAGCAGTTGTAGTCGGAAACAGTCTTGG AGGATTCACTGCTTTATTGACAGCAGAGGCATTGCCAGAACAAATCGTGG GAGTTGCATTGCTGAACTCTGCAGGACAGTTTGGGAATCCTATTGATGAG ACCGTTGAACCCACGGAGTTATCCTTCGGAAGTACCGTCCTAGCACCAGT GAAGGATATATTTCAACGCGTAGTTCTTGGATTTTTATTTTGGCAAGCCA AGCAACCTGCTCGTATCGAATCCGTTCTAAAAAGTGTATATAAGAATACC ACTAACGTGGATGACTATCTTGTGGAGTCTATATTACAACCAGCAACAGA CCCAAATGCAGGAGAAGTCTATTACAGATTGATGACAAGGTTCATGTCAA ATCAAAGAAAGTACACACTTGACAGCGTCTTAGGTAACCTATCTTGCCCA TTATTATTGCTTTGGGGTGACCTGGACCCTTGGGTAGGTCCTGCCAAGGC TATCAGCATTAAAGAGTTCTACCCAAAAACATCCATCGTTAACCTCCAGG CTGGACATTGTCCCCATGATGAAGTGCCAGAACTTGTGAACAAGGGATTA ATTGACTGGATGTCAAGTTTGCAATTCACATCCCCTGTCATGTTGTAA
Pep:
>DCAR_016063pep MLYSCALTSHLLLSPNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASA MPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGF GASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDF LKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDE TVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNT TNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCP LLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGL IDWMSSLQFTSPVML*