| NCBI Gene |  |
|---|
| Relationships |
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| The mRNA, XM_017402147.1, is a part of gene, LOC108227151. |
| The genetic_marker, MK004270 K1714, is located in gene, LOC108227151. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017402147.1 | XM_017402147.1 | mRNA | DCARv2_Chr6:18771922..18781122 |
ATTACTAATAACAAAATATTAGTTTGGAGCTTGGAGGCGCTCCCAACTGA
TATATCTTCAACCCAAACCCTACTGCTACCTATCTGCATCTTCCAAACCC
TAGCATAAACCTCCCGACCCCAAAAAAATGGAGGAACCAAAAGTGATGAA
AACCCAAAAACCCAAGAAGAGAGAACGCCCAATTGAGCATGAATCAGCCT
CTAATCCGGACCCTCTTAAACCCATGGAAAGAAAAAAGAAAAGAAAAGCC
ATGGCTAAAGAAAAGCACAAATCTTTGAACCCCCCTTGTGAATTGAAGCA
AGAATTGATTGTACCAATGGAGACTCCATCTTCTTCATCTGGTAATAATG
GGTCGCCTGAATTACATCTTGGGGTGTTTAAAGATCTTGGGAATGGTGAT
GTTGGTGTCAGAGTTGCTGCAGCTCAGAGGTTGGTTTTGGAGTTGAAACA
AGTTCAGAAAGCTTTTGATAAGAGTGATGAGAAAGATGAAGATGGTGATG
GGTTGATGTTAGAAGCTGAGAAAGATGATGGGTTGAATAATTGTGCCCCG
TCTGTTAGGTATGCTGTTAGGAGGCTCATTCGGGGTGTTTCGTCTTCTCG
GGAGGTTTGTTTTGGTTTTTCTTGTATTTTGGATACTTTGGTTTAGTTTG
GCATCGGTTTTTTTACAGTTTCTTTTGTGAAATTGAAAACATGCTTATCT
TTTCTCTTTTTTTTTTTTGCTTTGTATAGCTAGAAGACTTATTTAGAGGT
TTGTTTTACTGATTTTTTGTTGTGGTTTTGGACAATGTATATGTAGTATG
CTTGTGGATTTAACTCTTTTTTTCCCCGGTAATTGAAAGCTTATTTTATT
TTTCTGCTGGTTTTTGTTGTGATTTTGAAATGAGTATCTTTATTGCTGAT
AAAGATTTTTCTTTGTGTAATTGTAAGTTTTTTTTTGCTATATGTATGCA
TTTAATTATTCAGAGGTTTGTAATAAAGGTTTTTGATGTCATTTTTTATA
AATTAGCTTCAGTTTGGTACTGGATTCTCATTTCTCGTGGTATTTAGAAC
ATATAAAGAATAAAAGTCTTTTTTTAAATTACAAAACCTACTTCTATTTG
ATTTCTACAGAACCTCCTTTTTATTTAGAACATAAAAAGAATAAGGAATG
TATTCTATTTACAAAACATACTTTTATTTGATTTAGAATATTGAAAGTAT
AAATTTTATCATACATTTAAATATTATATAATTATATAATATTTTATTAT
TATGTAATCTTAACTGTTTATCAAACAGTAAGATCTAATGGTTCAAATTT
ATTATGCGGTACTATACCAAACAACCAAACTATCATCCTTAGGCTTATTA
TATATAAGGATATAATTAGTTGCTATCTGTTATACAAGTATTTTCTCTAC
AGGATTACATTTTATTCAGTATTTTTTGTTCCAATTTGCATAAGAAAAGC
AATCATGTCTACTTCCATTCTATTGCTCTAATTAAAGTAATCGTTTCCAC
TTCTACCATATTTCTACTAGAGTGTCAACTAAATACATTATGCATTGTGT
TTTTCCGTCCATAGAATTTTTGGCTGCATCTTTTGAATGATTTTGTATTA
ATAATAATAATAATCTTATGAAAGTGTATGTGTAGTGTTTCATGTAAAAG
ATAAAGATTCCATGTATACTATTATCAGTTGGGATTTGGGAATAATGTTT
TTTCTAGTAAAGCTTGGATTTTGTCTTTTCATCTTTGTCTTTTCTGTTTG
AGTGACTTGCAGAATGATAATCTGTCTAGTATTATGTTAGAAATGCTCAT
AAGATGGCATTGTGCGTTTACTCTCCATAGCATGAGCAATGGCATCAATA
TAGGTGGCCATAAGCTTTGATGTCTATTTGTGTTTTATTAAGTCAATTTA
ATTGAGTATTCGTTTGTGCAAGTTATCAACTGTTGGAGTTGTGGTTGCAC
ATGTAAACATAATTCTCAGTAAAAATGATAATAGTATACATGATTTTAAA
TGTTTATATTATTGGTCCATACTGGACTTGACAGTAGTGATAACTTTGTA
TTGCTATGTACCACTGTCTTCAAATACTTATCTGTGATTTAACTCTGAGC
ATAATCTGACATTTTTCTGCAGTGTGCTAGACAAGGGTTTGCTTTGGGTT
TGACTGTTTTAGTTGGTGCTCTTCCTTGTGTAGAATTGAACTCGTTAATG
AAACTGATTGTTGATCTATTAGAAGTCTCTTCTTCAATGAGGGGTCAGGT
ATGTAAGCATTTCTTATCCTCTAGAAATTTTAGTATCTTGCAAGTATTAA
TTGCTTTGATGTCTGTGCAGGATGTAAAAGATTGTCTCTTGGGTCGCTTG
TTTGCTTATGGTGCAATTGTGCGATCAGGAAGACTAACCAATGAGATGAC
TTCTGATAAGAGTTATATTTACGTCAAGGATTTTGTTAGTTCTCTCATAT
CCCTTGCATCCAGAAAGCAGTATTTGCAAGAGCCGTCTGTCGTAATTATC
CTAGAATTGGTTGACAAGGTACTGTTTAACCTTCTTGAATAATGTTTTGA
AGCTATATATTCCAGATGTTCTCTTTTATTTTTTTTCTCCCTTTTTCACT
TTTTCCCTCCATAATACTTTCAAGAATGAGTTTCATCACTTGGAATCTCC
TGTTTTAAGCATATGATGTCCACAACTTTGATCTTCTTGCAAGTCTTGCA
AGATATTGAGGTTAGGTATAAATAGTGCCTCACCGTGTAAGACCTTGCTT
CAGCCTCGCATCATTTTGTATCGAACTCACCCTAGGATTTTATTTTCATG
TGCTTTTCTTGATATATTAAGACAATAATATCATGTACACACATGCAATA
TCATGTACCTGCACATAGTATCTTTTCTGTTTTAGCATATGGGGGACCTT
TATGTCATGCGAGGTCTGTTTCCTGACTGCTTCCAAACAAACGAGGGATA
CTACTGAGCAGGATGAAGTATGATCATGTGCATTGCTTAGTGATATATAT
ATATACTTATTTTCAGTATATACTTTGTTCTGTTAAGTAGTGGACTAGTC
TGTACTCTGTAGTCCTATGCACAGGAAGAAACTATGTCCTTTTATACTGG
TGTATCTTGAAAAAGGCTTCCAGTAGCTTGTGTCTGAGGACCAACCCATG
GCTCCTCTTTTTTCTTCCATCTGTAACTTCTATTGAGTGTTCTTTTTTAA
CATGAAAGTTTCTTTTGATGCATCCTTCCTATTTCTTCTGCTGCAGTTGC
CTATTGAAGCTGTGTTACATCATATTTTAGAAGCTCCTGGGCTCCGTGAA
TGGTTTGAAAAAGCCCCTGAAGTGGGAAATCCTGATGCTTTGCTTCTTGC
TCTTAAGATCCGTTTGAAGATCTCTATCGACAATGATGTCTTTGGAAAGC
TTTTGCCTAATCCATATAGCTCTAGCAACCTTTTTTCCGTCGACCATCTT
TCCTCTATTGCTAATTGCCTAAAGGTTATATCTACATTTCTTTGTGCACA
AATGGAGATTTAAAGCTATCTTTCTCATATTGTATAAAACTGTATGCAGG
AATCCACTTTCTGTCAGCCCCGAGTCCATAATGTATGGCCTTCTTTACTT
GACATTCTCCTACCGAATGTTGCTTCAAAAGATGCAGACACAGCTTCAGG
TTCAAATGTTGTGAAAAAGCCCAAAAGGCATCGCAAGTCGAACTCATCTG
AAGAAGACATTGAGAAAAACCTTCGATGTTTTTGGGAAACTATTATTGAA
GAATCCCTGCTTTTGTCATCTCATGATCGTAAACATTTGGCTTTTGACAT
TCTTCTTCTTATCCTTCCAAGGCTTCCTATAACTTGTGTGTCAATAGTGC
TGTCTAGCAAATTTGTCCAGTGTTTGATGGATGTACTTTCAACTAAAACC
TCGTGGCTATATAAAGTTGCCCAGCATTTTCTCAAAGAGCTGTCGGACTG
GGTAGAATATGATGAAGTTAAAAGAGCAGCTGTAATAGTATCACTGCAGA
AGCACAGCAATGGAAAATTTGACTGCATTACACGTACAAAAACAGTAAAA
GATTTTATGGCAAAATTTACCACCGAATCTGGCTGCATGCTGTTTATTCA
GAACTTGATGGACATGTTTTTGGATGAGGGACTTGTCACTGAGGAGCCTT
CGGATCATAGTCAAACAACTGATGACAATTCAGAAATTGGTTCAGTGGAG
GATAAGGATTCTGCTGGAACACAGGGAACCTCCGAATTTTTGAAAACTTG
GGTTATTGATTCTCTTCCCAGTGTCTTGAAGCATTTAAAGATCGATCAAG
AGGCAAAGTTTGGTGTTCAAAAAGAAATTTTGAAGTTCTTAACTGTCCAA
GGTTTATTCTCTTCATCACTTGGAACAGAACTTACATCCTTTGACCTAAA
GGAGAAGTTTAGATGGCCAAAGGTTCCGACATCTAGTACTCTTTGCAGGA
TGTGCATTGAGCAGCTTCAGTTACTATTGAAAAATGCTCAGAAAGGAGAA
GGTCCTCGCTCTGTGGTTGGTGGCCTCGAGGCAAACGATCTTGGATCTTA
TTTTATGCGATTTTTTAGCACATTGTGTGAGATCCCTTCACTGTCTCTCT
TTAGAACTCTTAGCAACGAGGATAAAAAAGCACTGAAAAAATTGCAAGCA
ACAGAAATTCACCTTTCTAGAGAGGTACTCCTACCTTTCCCTAACTAGAT
CTTCGACACTGATTTCTGACCTTGGTTTGGTGAACTCTTTTTGTAATACC
TCGGTAGTGGCATATATTCTGGAAGGAATTATTGAGCTGGGTGAAATGTT
TAATTTTTAAAAGTTTTAGTGCCAAAGACATTAATTATGCAGAGTCCTAA
CATCAGACTTGAATGAAGAGTTTGATTACTTCAATACAGAACTATAAACA
TTTTACATTATATGTAGTGTCAGAGCTTCTAAGAAACTTCAATTGGAAGT
TTACCTGATTAACTAATTAAGTGCTAATAATCTGTTTGTTACTTGCGTAC
ATCATCTTAAGTTTCATAACTACTGCAGGAGAGGAATTGTGGTCTCAGCA
CAGATGCACGTAAATTGCATTCTCTTAGGTATTTACTCATCCAATTGCTG
CTCCAAGTTCTGCTTCGTCCAGATGAGTTTATTGAAGCTTCATCTGAACT
TATCATTTGTTGCAAGAAAGCTTTTCCCTCTGACGATCTTAATTTTTCTG
GAGATGATGAATCTGAAGATGACGGGACACCTGAGTTGATGGATGTCCTT
GTTGATACATTACTTTCTTTACTGCCTCAGTCATCAGCTCCTATGCGGTC
TGCCATTGAACAGGTGAGTTCCAGTCTAGGTTTTGCTGTAATCACTTAAC
CGGAATATTTGTGTACTTTATCTGTTAAGCCCTATATATATATTTGCACT
AAAGTTATGATTCACTTAAATGATTGAGATCAAATTTATGTTTATAATGA
CTGTTGATGGATTTTTTTCCAAAGCAAAAGGCCCTTTTTGGTGAAGTCTT
GAAGACAATAGACTTTATATTGGTTTCTGAGGCAGTATGTTCTTTATGAA
AGATATTAAAGTTGACATGGTGGATTTTTTTTGAAGTACTTATTTATGAA
ATGTTGCAGAAGGCCTTGACTTGAGTTGAGTTGCCTGTTCCAGTTAAAGT
TATTCACCTCTGTATTATACTCTTGTAGGTATTCAAATATTTTTGTGATG
GCGTCACGGATGATGGATTGCTTCGGATGTTGCGTGTTATAAAGAAAGAT
CTGAAACCAGCTAGACATCAGGATGTAGACAGTGAAGATGATGAAGAAGA
CGACGATGATCTTCTTGGAATTGAAGAAGCAGAAGAATCTGATGAAGGTG
AGACAGCTGAAACCGGCAATAGTGATGAAGAATCTTTAGATTCTGAGGCA
GTTGATGGCAGCCAGCTAATTGGTAAAGAAGTTTCTGAAGCCCCCGATGA
TTCTGATAGTGGAATGGATGATGATGCAATGTTCCGCATGGATTCCTATC
TTGCACAAATTTTCAGAGAGAAGAAGAATCAGGCTGGAGGGGAAACTGCT
CAATCACAGCTTGTGCTCTTCAAACTTCGCGTCCTCTCTTTGTTGGAGAT
TTACCTACATGAGAATCCTGGTAAATTACTTTTCCAAAATAATAATCTGC
ACGTCTTATTTTATGACCTGAATATAATCTTTCATCTCCTATACTTCATA
ACTAGATGAAAAATGATTAGGTTGGCCATCACATCACTGCTTTGTAAAAT
GCACCAAGATAATATTCAGAAGCATGCGTCTGATAGATGGAATAAAATTT
GTTCCATAGTCATTGAACAACTTAGATATGGCCTTAACTTGGGAAATGGA
AGATATTTTATTCAGAATGTGTACCTAAGCAGAAGAATATTTTTGAATTC
GAACCAAATCTGATCATAGTAGTGCTGTACTGCTGTTTGCATATGTTAGA
CTCAATTTCACCCCTAAATAAAAGTATGACTTTGCCGGAAGGTTTTGGGA
TGGCAACGAGTAGTTTTGGATTGGGATTTGGAAAATCCATTCATCAGGTT
TCGGATTGTATCAGGTTTTTTCGGGAAAAAAGCTGTAATCAAGTCTAATA
TTACTGGTACAATTTCACAACAATAATCATATATATAACAAAATTGAAAT
TGTGAATGATTAAGTTAAATAAAACCTACATATATTACACCAATTAAGAT
ATCAAGGCATGATCAATTAATAATTAATACTTCACTGATAAAAAAATTGA
AACATGACTGTAAGATTGCAAGCGTCAGATTATAATCATATTAAACATTA
AATATACACGAGAGGACAAGGGATTTTGGTACTTGATGCTTTTACATCTT
GTCAATACAATTTTTATTAATATGTTGAACCTTAAGTTTAATTAGATGCT
TTTTTGTAAATGATTGGAAAATCATGACCCCTCTATGAAAAAGCAAACAT
AGCTGTGACCATTTTTGTAAATAATTGAAATATCTATATAACCAGCGTTG
TTCAACACCTGTACGAACTAGGGTTCAATACATTTTATATTTTTGTCAAT
AATAAAATTACTTTTTAAACCTTAGTATGTAAATTATTATACAATGTTAC
AATTAAGTAAATTATACTCTCTCTGTCCCAACCATTTCTTTACACTTTCT
TTTTTGGGATGTCCCATCCAATTCTTTACATTTCAAAACTTACCAAATGT
AGCAAAATTTTATAATATAAAAATCAACTATCCCACCTACTCTTCTTCAC
ATGGGTCCCACCACTATCCTCACTTTTCTTACTTTTCCACTCTTACTTCA
CAAATGTTCTTAACCTCCATGCCCAATATGTAAACATTTGGGTGGGACGG
AGGGAGTATTGGATAGTTAAGTTTCATAATTATTTTGCCCTAATCTTGAA
ATGTTGAAAATAGTTATTAATTATTTGTTCTATTATATTAAAACATGAAC
TAGAGATAATTTGTTACTATGTTGGTTGGTATAATGGGTCATATGTGCTT
TTAAAATTGTGAATTATTTATTTTATGTTAACTTTTTATGTTTTTTTTGA
CAAAAATCTTTTTCAAAGGCTCCATAAGAGTTTGTTTTTAATGTGCATAT
AGGAGTACAGATTTTTTTTATTTTATTTAAAGTTTTATATTGACAATATG
GCTTTAAATATGTAATCAGAAATCTAATGGAATTACAAGTATTACCAATA
TTATAGTTCTATTAGAATTCCACTTCGTACACTAAAATGACAATAGATGT
TATTATTTATCTTTCGGTTATTTTTATATTGAAGATACCATGTAGAATAT
ATCTCATGAATTTGAGTTATTAGTCACCTTTGTAATTTCCAGATACTATA
CAGTAGTCAATTTCCCCAGTCCAGTTCTTTGCAAATATAATCATCATATT
TCTAGTTTTACTGGAAAAAACGTATAATGTGGATCTATTTCTTGGGATAT
AATGTAGATTAACTTAAATCTGTATTATTTCCTTTTTCTACATGGGTTAT
GTTACACAAGTTTACTGTTATACAGGTAAGCCGCAGGTGGTGAAAGTGTT
TACCTACCTGGTCCAGGCATTTGTTAATCCAAATACGACAGAAGGCAGTG
AACAGCTTGGTCAGCGTATATTGGGAATATTGCAAAAGAAGATTTTTAAA
GCGAAGGAGCATCCAAGAGGTGAAGCAGTTCAACTGTCCATGCTTGAGTC
TTTGCTAGAAAAGAATTTAAAGTTGGCATCAAAACCATTTAAGAAAAAGA
AAACTGCGCCCAACCCTTCAAAGAAAAAGCAATCAGCCTCTTTTAACAGA
TACAAAATGATAAAAAATCTTGCTCAAAATTCAACATTTTGGATACTAAA
GGTGATTGATTCAGGTAGTTTTCCAAAGTCTGAACTTCAAAGGATCTTTG
ATATCTTCAAAGGGGTTTTGGGTTCATATTTTGATAGTAAAAAGTCTGAT
TTGAAGTGTGACTTTCTGAAAGAAATATTAAGGAGGCCATGGCTTGGGCA
TCATCTCTTTGGATACCTTGTAAAGAAATGTAGTAATGCGAAATCAAAGT
TTCGGCAAGTTGAAGCCCTAGCTTTGGTCACCGAGATACTGAAATCGCTT
GTATCTGTCAATGCTGATGGAAGTAGCCAAGATCTCTCAAAGAAGATGCT
GAAAAGTCATATTTCAAAACTTTGTCATCTGATAAAGGAATTGCTGACTA
ATATGCCAGATAAGCAGGCTAAACGGGCTGAAGTGCGGAAGTTCTGTGGA
AAGGTCTTCCAAACTTTAATAAGCCTTAAACTCTCAGCATCTTTTCTCAA
ATCATTAGAACCAGAAGTACATGCTGCTTGTGAGGCACAACTTGGCGAAA
GTTTTCTTGCATTGAAAAGGCAGGAGTAAAGTATTACATCAGGTGCTTGA
CAGTTAAATTTTGAGTGCATTGCTGATACACAGGCAATTTGCGGAACAGT
ACTTCATAGATCTCCTGACCTTCCTCGGTCAATCCAGCGTCCTTGTCAGA
AACCTAAGTACCTGTTTGAGAAATGTTCAACATTCTGTATGTTTCCCTTT
ACGTATCTGTAGTCCTGTCATGGCTATATTATTCAGTATGAATTCATTTT
GCTGGTCTGCTAGTAAACCATATGTGAACAAGACTAAAAAGAATTATACT
TCTCATATTTTGTATCTCCATAGATTGAAATTTTAGCCATTTACTAGTAA