Resource Type:
Gene
Organism:
Name:
DCAR_015895
Identifier:
DCAR_015895.gene
Locus Tag:
DCAR_015895
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_015895, is a part of gene, DCAR_015895. |
| The genetic_marker, MK009554 4_5583510, is located in gene, DCAR_015895. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_015895 | DCAR_015895.mRNA | mRNA | DCARv2_Chr4:5574529..5586577 |
Sequence:
AATAAAGATCTTAATTCGTAGTTGGTAGATTTATAAAATGAAAAATTAAT
ATTTTTCAAATAAATGTACTTATTTTCAATATAAAAAGTAAGTGAAAAAA
GACCTTGTGAGAGTGAGACTGAGAGAAGCAGAAGCCCAGCAGCTTGTTAT
ATACATACACACATACATACATTGAATCGTAGGCCAAAATGGAGAATGTA
ACAAGAGCATCAACACTAGCAGAAGAAGACGAACAAGATTCAAAAGAGGC
GGTTCTGCAACGATACTTTCTTCAGGAATGGCAGCAAGTCAAGTCTATTC
TCCACTCCATTCTCTCCAATGGCCGTGTCACCGATCTCTCTTCCGTTCGC
AAAATCCGATCCATTGTTCGTCTTTCATTCATTTCTCTCTATTTTGAGTT
TATATCTGTCATGTTCGTATTTTGTTGATTAGGCAATGTGTTATTGTGTT
TGCAAGATTTAATAGTAGGCCAGGTGTTCGACAAATTGCTCGAGTGAGAA
ATTAAATTACGTGATCCCTCTGTCCCAAATTAGCAGTCGACGTATTTTAA
TTCAGAAAAGAGAATTCAAAATATAATTTGGGAGGTATCTTTCCCATACA
CTTTAAAAGCACAGAGTCAAAGTGACTATTCCGGACGTAGGGAGTAATAA
CTAACTAATGAATGAGAGTTTGTTAAGAGTATTTCCAACACTGCGATGTA
ATAGCTAGATTCTTAGACTATTGTACTGATCTGAAAAATGATCAGCTCTG
GAGTGAGTACAAAGCCAAGTATCAGGTATCTATGATATTCACCACAAGAT
ATTACTGTCGGGGATGTGATGTGTACACACTTACAGTAATTCTCGACAAA
TAAATATTCTGACATTGCGTGCTATGTATGAATCCTCAGATTAAGCCTGA
TGTTGACCAACAAACAACAGAAAAGAAAGCCACGACTTGCATTCTTTTTT
TATCTTTCTACTCTCTAGTTTGCCAAGTTCCTGCATAGTTTTGGGTTATT
TTGTAAATGCAGATGGTTTTAGGTTGCTTTTATGCAACACAGAGAAAGTA
AAATTATAGGGAATCAAATTGAATGACAAATAATATACATCTGGTAAACT
AAATATGTCGAGCTAACATTTGACATTATTGAGTAAACTATGAAGACATT
ATTTCCTTAAGTAGTTTATGTTGCCTGTTCTAATTATAAGTTACTACATT
TTGCAGATGGACAAGTACCAGGAACAGGGCCAGCTGCTAGAGCCATATCT
GGAAAGCATAATTTCTCCTTTAATGTCCCTTGTCCGTTCAAAGACAATAG
AACCAGGCCTAGCTAACAATGAAGTTCTTGAAGTGATTAAGCCCCTATGT
ATTATAATCTACTCGTTAGTTACAGTTTGTGGTTACAAGGCTGTTATCAG
GTTCTTCCCTCACCAAGTTTCGGATCTGGAATTTGCTGTATCACTTTTGG
ACAAATGCCATGATAGCAAAGCAGGGACATCATTGAGGCAAGAAAGTACA
GGGGAGATGGAGACAAAATGTGTAACACTGCTATGGCTATACATACTGGT
TTTGGTTCCTTTCGATATCTCTTCTGTGGATACAAGTATGGCAGATAGCA
ATTATCTTGGTGGAGATGATTCACCTCCACTAGTAACTAGAATACTAGGA
TTCTCTAAAGATTATCTATCAAATGCTGGTCCTATGCGTACCATGGCTGG
GTTGCTCCTCTCAAGGCTTCTAACCCGCCCAGACATGACGAAGCCTTTTA
ACAGGTATGTTTCTTGTTTAAGTGACAATAGTGATTATCTTAGTTAATAT
AATTCAGATCTTATGATACAATATCTGTGATGAAGCTGAGCAACCTTAAA
TCATGATCCAAGTATCGTTCATTTAACTAATTTGGGCACCCTGAGTGATT
ACGGAGCAGAACAAAAAATTCTTAGTTTAGCTGTAAATTTTTTATTGCTT
AATTCTAGGTGAATGAAGAAAAGAGTATGAGCTTATATTTTACATATGGT
AAATTGCAATGTGTATAATTACATGCAGTTTCATATGTATAATCCTTTTG
ATCAGTAAACTATTACCTTTTTTAGAAACTTACCACCAAACAATAATTTT
ACTCAATATTATCACTAATGTTACGAACATTTGTGATTTTAGTCATTCCG
TTAAGTTTTACAATGAAATTTTTTTTTTTTTGTGATTCAAGTAATTATAC
TTATGGTAAATTACCTCTAAATTACATAATAATTTTTTTCAAATCATGAA
TTTTACAATTGTATTTGATTATAAGAATTTTGTTAAATTTTTGCTAAATT
TTAGTTATTGCTGTTAAAATTGTTAAAATCAGCTGCCAGTGAATACATAG
ATGATGTATTTTTAAAAATTAATTTTAGACTTGAACACTCTAGCTTAGAT
TTTTACTAAATGGAGTCATTTAAATCTTTAACTATAGAACCATTTTGGTC
GTTCCACATGAATATCTTCAATCACACCCTAAAAAATTTCACACTACTTT
TCCAAATAAGTTCAGTATGCCTAATTTGGGAATTGATTGAAGAAGAAGAG
ATATCACAATATATTATATTAGAATTATTTGAAACCTTAACTTATTTCTT
TCTCCAATCACAATAATTCAAATATATATGAACACATTGGTAAAACAGTC
TATGATGATGATTTTTTTAACGGCTGATTACAAAACTTAACAAAATATCT
AAAATGAGAGAAACGTACGTGGCGTTAGTGGTTATAATAAACAAGATAAT
TGTTTGATGATAATTTTTTAAAAGAGTCAATAGTTTAGTGATTAAAAAAA
ATCCATTTTTCCTAAAAGTTAACGGAATAGTTAAAGGGATGTTTAAATTC
AAATGATAAGATAATAGCATTAGTGACAATAAAAAAAATTTATATTTCAG
TGGTAGGTTTCTAACCTGATAGATAGTTGAGTGATAAAAGAATTCAATTT
CTCTACTACATGTGGCAGGACTTCTTACGAGATGCAGAAACAAAATAAGT
AGCATCCTGGAACAAATATATTTTTACACACTTTGACTTGCATTGCATAT
GTAATTCTTTTGGAAAGGCAGTAGTGCATATTTAGATGAGTAATTTTAAT
TTTTTTTAAAAGTATAATATGATTTGACTTTTGAGTTATTAAACTATTAT
TGTTCTATAGCTGCTTTATTTTCATTGCATTTTTTCACTATTCTTACCAG
CTTTATTGAATGGACACATGACGTTCTATCCTCTGTCACTGGAGATGCTC
TACATCACTTTCAGTTACTTGGAGCTGTTGAAGCACTGGCAGCAATTTTT
AAGGTCTTTTGAGCCTAATTTGTATCTAGTTTTGTTGTGCCTGGTCTTTC
AAATGCATATTGGAGACTTAAATAAAATCTGAATTTGACTCCTGAGTTGG
TTTCTATATGCTAAAGGATATCTTTTGAGATGAATCCTATGATAGTTGGT
TTATGTGGATTATATATCTTTTGCTGTTTGATTGGTAAGGGGGAATTTTG
AAGCATATATAGCTTATTATATGGTAATTTCCACTGATAGGCTCCGTCGG
ATGTCATTATTCTATATGATGTGTTTGGTTGCAGTAATAAGTATAACTGG
TTTTGGTACTTTTTTTTTACGTCTTCTTTGAGATCAATAGATATATTAAA
TAGATTAACCAATAGTCTCTATTGACAATTGTGCATATCCTTTCTTATAT
ATTTGAAAACTTAAGTTACTGAAGGGGCAGTCCTCCAGCAGCACCTTCCA
GTGGGAGGTTGAGAGTTCAAGCCTCAGTGATAGACGTGTGTGTGTGCACG
GGGGAGGGCTGGACCCCATATGTCAAAACTGAATGTAGGAACTAGAGTAA
AGATTTTTTTAAATGCAAAAAAATAATATTACTTGAGGTAAAAGCACAGA
TGTTCAAAATTTGCGAAAAAAAGAACACAGAATTTAATCAGCAAAAAAGG
CATAAGGTAATAGAAAAATAAAGCACAGAAGTTAATTTGGAAAAATGTGC
AGAAGTTAACTTCCCTTTTCCTACACAAAGAAATTACTGATCTGCCCTCT
TGAGTTATTGCTGTCTGTGACACACGGAACTTTTTTTCTTATTTGCAGGC
TGGCAATAGGAAACTGTTAATGAATGTGGTTCCTGCTGTTTGGAGTGATT
CGTCTGTTTTGATCAAGTCTGATGGTGCAGCTCGGAGTCCTTTACTGAGG
AAGTATTTGGTGAAATTGACTCAGCGGATTGGGCTTATTAGCCTCCCTCA
TCGTTCACCATCCTGGCGTTATGTGGTTAGAATGTCAAATTAATGTTGCA
TTACAAATTCATATTGTTTCTGCTTGCACATATTAATGTTTTCCATCACA
ACAATCTTTAATTTCCAAAGAAATCTGGACCATATCTTGTTGAAATTCGG
TTGCTGAACTTTCTACTGTATTGTGTTGGAATCGTGAATTTTGTTTAATA
TCGAGCTTCAAATCAATGATCATTTAATCTAGTGTTAGTACTGTGTAATA
TCAAAATATGTGGTGCATAGTGATATACATTACTTTGAGTCTTTATGGGA
TGCTTTTCTAATCCCGTTCCTTGATGTAGACAAAATTTAAGACCCTCGGG
GAGAGTCCTCTGTCTGTGTCTAGTACAAGCGGCTATGGCGTGGATCTGGA
TTCCCTAAAATTAGCCGTAGAAGAGAACCTGCACGAGGAAGAAATGGATG
TTCCAGAAATTGTAGAAGAGATGATAGAGTTATTGCTTTCAGGACTGAGA
GATACAGTAAGTTGAAGAGTGAATATCATCTTGACTTTCCCTGTTCTCAT
GTGACTGTGTACTAAATAGAGCGTGACTGAAGCAAGATGCTAATTACAAT
TAGTTTTTATGAGTCATTTTGCTTACTGAGCAAAAATATATTATCTGACA
TGATTATTTCGCATTAGGATACTGTTGTGCGCTGGTCTGCTGCAAAAGGT
ATTGGTCGCATAACTTCGCGTCTGACGTTTGCCCTCTCAGATGAAGTTCT
TTCGTCTGTGTTGGAGCTTTTTTCTCCGGGAGAGGTATGTTGAAGCAATT
GTGTAATGTGTTCTTGTGCCCTTATCTCCAGAGAGACTTATAATATCATT
TATATATTTATTATTTGCCTTTGTAATGTCAAATAAAAGTCTACTCTAGA
ATGCTGCATACTGCATAGGCTCTTGTATCAACTTTCACATTTAAGTTGCA
ACTTTTTGCTATTATAAAGGGAGATGGTTCCTGGCATGGAGGATGCTTGG
CGTTGGCTGAACTAGCACGTAGAGGATTACTCCTACCCATCAGTCTTCCT
AAAGTATTACCTGTTGTTATAAAGGTATGTTCTTTATTTTCGTTAAACAC
TTAAACTACACCGAAAATATCTTAACACTAAGCTTTAATATTATTTCTAC
TATTTCATGGTCCTTTTAAATACAAAGGGATAGTGGTTGGTTGTTATAGG
TGTTCTGGCTGGATTTTTTTTTTTTTTTTTATAATCTGCCTACCACTCCA
TTACTATATTGAGAAAATTTAGTTGTGTAAGAGATGTTGTTCAGTGGTAT
CAGTTTTGATGTTTAATTCAGCCCTGTTTAATTGTCGTCAAGTTGTTAAA
AAAACTTATCTCTGTACATCGCTGTGTATTGATTAGTGGTTCCAAATTGT
ACATGAATATAATTAAAATTGTTAACAGGCTTGACAACTATATTTAAGTA
GATTACTAATTTGTAGAGATTCTTTAAATTCCACATGGTTATACTTGAGA
AGACAACAAAGCCCAATTTTTTTAGAACAAGAGACAACACACTATTCTGT
TCGTACAAGTGCATACGATCTTAAATAATTTAGTTTAGGTGAAAATCATT
AATGCAGGCATTGCATTATGATATTCGAAGGGGCCCACATAGTGTTGGCT
CTCATGTGCGTGATGCGGCAGCGTATGTTTGTTGGGCTTTTGGTCGTGCA
TATGCTCACACTGACATGAAAAGTATCCTGGAACAGCTTGCCCCACACCT
ACTAACAGTTGCATGCTATGATCGCGAGGTGCTTATCAGACCATATCTCT
AATATGCTTTTTATTCGACTATATGATTTACTGATTTTCAAAACAAAATT
TTTTACGTTTCAACAATGCTTTCTCATTAGGTTAATTGTAGACGAGCAGC
AGCCGCTGCTTTTCAGGAAAATGTTGGTAGACAGGGGAGTTATCCTCATG
GTATTGACATAGTAAATACAGCTGATTATTTTGCACTGTCATCACGTGTA
AATGCTTATCTTCATGTTGCTGCCACTATTGCTCAATATGATGGTTACCT
CTATCCATTCATGGAAGATCTTCTATACAACAAGATCTGTCACTGGGTAG
GTTTCAACTTTTAAGTTTATGTTTTTCCTTTTCCCAAAAATTCTTTGAGG
TTGTATAAATGCTGTAAACTGTAATTGTACTTTTAGTTTCATTTCTCTTT
TAGTGGTGCACCCCCCCACCTCCAGTCTTCCCCCCTCCCCGCTCCTGTTT
TCTAGTAGACATACTTGTTCATAAAACAAAAGTGGGTTAAATGAGCGATA
CTAAATTGCTTAAATGAGTAAATGGAGCAGAGGATACTGATAAGATAATA
TAGCTATAAAAGACAGATCACATTAATGGAAGCTTCATCTGGTTTTGCTG
ATGTATTTTTGTTATCTATTTTCCTAGAATTTATCAGCGTACCGCATGTC
CTCCGATAAATGAATGTCATTCTTTTATGAATTTACTCACACATCAGTTT
TTTTTTCTTGATGTGTATATAGTTTTATTGTAATGCTTATATTTACTGGA
CAAACTTCGATAACATATACCCTATTCTTTGTTTTCCTTCAGGACAAAGG
CTTAAGAGAGCTTGCTTCAAGTGCACTTTCTGTTCTTGTAAAATATGATC
CCGAGTATTCTGCAAATTTTATTCTGGAGAAAGTGATTCCTCGCACTCTC
TCATCGGACTTGTGTATGCGTCATGGTGCAACGTTAGCTGCTGGAGAACT
TGTTTTAGCTCTGCACAAGTGTGGTTATGTTTTTTCCACAGGTGATTTTC
AATCCGTTGTCCCAACTAACATGCCAGAATTTGTAATAATGTAATTTAAG
TTCTTCTGAGTTTCAGAGGTTTCGGATTTCTTTACCATTTTAATATATTA
ATTAACTATAGTTAGAGCCCATCTGGCTTTTGCCTTTTTAGCTTTTTAGG
CTAGCACTCTAGCAGTTGGTATACATCAAGATTGTGGAAACCAGCTTCTA
CAAGAGCTGTTATAACTTCATTCGGTTAGAACTGCCCTTGACCTTGAATT
TAATATAAGACAAAGCCAGATTTTAATCCTCTTTGACATTTTTAGTGCAA
CTTTTATCATCTAATAACCGAAAACTTTGGCAGGGCCTTGTAAGGATTTG
ATATCCCTGATTTCCTAGTTATTTTATAGATAAATTTTTTTGTACCTGCC
AGCTTTTACAATTTAATCTCCGATATGACCTTTCTTTGAATGTTATCGGT
GCTTGGGCCATCAATTATAATTGAGGGAGAATTTTATGACTGAGATTTTT
TACATAATGGCTTCACTAGTCACTTCTCGCTTCCTATTGATTCTAGCTAT
TAGCATGCAGATAAGCAGAAAAGTATTGCTGGTCTGGTACCTGCAATTGA
AAAAGCACGGTTGTACCGCGGAAAGGGTGGAGAGATTATGCGGTCTGCAG
TTTCCCGCTTCATTGAATGTATATCTTTGTCAAACGTTTCTTTGCCAGAA
AAAACAAAGCACACTCTGCTTGATACTCTGAATGAAAATATGAGGCATCC
AAATAGTCAGATTCAGGTGTTTCCTTGGTTATCTAATGAAGTCTTGGGCT
GAGCTTCCCTTAAATTTTCTCGCGAACCCTCCAAGAATAATTTGATTTTT
TTTTCTTTACAGAATGTGGCTGTTGAAGCCTTTAAACACTTTGTTCTAGC
ATACCTTGGTAAGACAACTAATAAAGGTGCCTATGATATCACTTCTAAAT
ACTTGGAACATCTGACTGATGCCAATGTTGCTGTAAGAAGAGGATCTGCA
TTGGCAATAGGTTCTTTGCCCTTTGAGTTTTTGGTAACGAAGTGGAAGTC
CGTGCTTTTAAAGCTTTGCAGTTCTTGTGCAGTCGAGGTAATCTACTTCT
GCTTTGTGCAAAGAGCTGGCTTTTTCTTAATTTCATTTCTGAAATATCCA
TATCAAATTTAGCTGTGGTAGGTTGAAATTGAATAAGAATAGTTGTAAAG
AAAGCAAGAAAATTTATCAATTAAACTTATGAGTTATGGCAATAAAACTG
AAATGGGGCAAATAGAAATCAAATGTACACGGGGGAACTCATTGCTTGAT
ACTTTGTCTAAGGTGTTAGTTCTTTAAGCTGTACATTTATACAGGTTTTG
GTGTACAGATATAGGTTTTGTTTGGTTTAAGGTACTACAACGTAGTTGAT
GGGAATATTCCAATGTCTTGTTGCTTGGTTGGAATAGGAAACTCGTTCCT
GTTAACCAGTCAACCAATAGGCCAACAAATCCAAGGAATCCAATATCATC
ACCATTCCTAATCTCCATTCCCATAAACGCCTCCCAGATTTATTACTCTA
TGCTTTTCTCTCCCTTGAGTCCTTGACCAAGGGGATGTCTAAATCAGTAA
CTAACTAAGCATACATGTATGTTGTTATTTGTAAAAGATATAGTAATTTA
TCTGACGACCTCAATCAACAAATTTTGATTGTACTAGGAGAACCTGGAAG
ACAGGGATGCTGAAGCACGGGTTAATGCCGTTAAAGGACTTGTCTCGGTG
TGTGAAACTTTATGTGCTACCAAAGAGTGTTCACAGTTTCTTCTTGAGGA
AGATGTTGTGTCTCTATATCTTACGATCAGGAATGAAGTGATGCAGAGTT
TACTTACAGCTCTTGAAGATTACTCGGTGGATAACAGAGGTGACGTAGGC
TCTTGGGTTCGCGAGGCTGCAATGTATGGACTTGAGAAGTGTACATATAT
TCTATGTAAAAGAGATTCATCTAAAAAATCACAAGGCTGCGATTCTCAGG
ATCAAAATAAGGGACAGGTGAATGGGAATGAGGAAATGCAATGGTTGTTT
GATGCACATATTGCTGCAAGTTTAGTTGGAGGCATTGCCAAACAAGCTGT
TGAGAAGATGGATAAGATGAGAGAAATAGCTGCTAGGGTTCTCCATAGGA
TTTTATATAATGAAGCAATTTTCATCCCCTTCTTACCTCATCGGGGAAAA
CTGGAGAAAGTTATACCCCATGAAGCAGATATTAAGTGGGCGGTGAGTAA
AAATCTGCTGACTTACTATCTATTTAAATAATGATATACACAGTCTACAT
ATTGATGGAAAAATTTTGATATTGCCTGCAGGTTCCTACATACTCATATT
GCCGTTTTGTTCAGTTACTACAGTTTAGTTGCTACAGTAAACATGTGACG
GCCGGACTAGTTATTTCCATTGGTGGCTTACAAGATTCTTTGAGAAAGAC
ATCCCTTAATGCTTTACTGGAGTACCTTGAAGGCACTGAAATTAAAGGCT
CAAAAGAAAGCATCTCAAGGGAGCTAAGTTTAAGTGAGGACATTGTTTGG
GTACTCGATAAGTACAGAAAATGTGACAGAGTCATAGTACCCACCTTAAA
GGTATCTTCAGTAAAGAATGGTAGTACAGTTTTTTGTCTTGACTAACCAA
GTTATTTGTTAGTAACAAGTAATTGCTGTATCTCATTACTCAAGCTAGCA
TTGACCGATTACAAATAAAGCATGTGTATTACATAGGTTCAATTATTCAA
AATTTAGAGTTGTACTATGGCTTTTTTTACTTTTATGGGTAAATATATGT
TACAATAATATTGGACACTCGAAAAATAAATTAAAGCTAATATATTAAAA
AGGAAGCATCCTTGGGCATGGCCTTGTATAACCTGATCGTGAAAGTAAAG
ATTGTTACTTCCTTAGAGCAAGGCATTTAAAATCTCAAGATGCACTCTTA
CATACAGTAGGAATAGCTCCTCAGCTTCTGGTGTAAATGTGGTGATATCT
GAGGGGTCCTCATCAGAAAAGTGGAACATAATAATTTTAATTCCTTAAAT
ATTCAGGACAGTGATGTAGCATATTATTATAGAAATGTATACTTCTTCCA
CTATATGTTTATACACATTCTTTTGCAGAATTATATATGACGTGTCTTTG
CATATTAATGATTGTTTTGTTATTTCCAAAAATATTCTTTCTTGCAAATA
TGTCAATACTCGAATGTACCTTCATGTTCCCTGGCCGTAAGTAATTATTT
CAAATCAATATGTTCTTGAATATGCCTTCTTATTTGTCTTCAGACCATCG
AGATTTTATTCAGCAAAGGGCTGTTCCTAAACTTGGAGGTAATTATCTCA
TCCTTCCAATGTCTCCCATCATTTGTTTTGGACTTAAGTTACATTTATTA
ATATTTGTTTCTGAATGAAGTTTGTTTGTACTCAAAACTTTTATACAGAA
ACTTGTCTCTACCCAGGTTAATCCTTGCATCAAATCAAATTATTATCCCC
AGACCGTTCATGTTTGGTTTTTCAGGTCATGTTTTGTCAACTGAATTAAG
AGATAGAACTTAGTGCAGGCCGACAGCCAGGGAACTGAGGTTATTATACT
ACATATGGGTTTTGATGCCCTGGAGAAATATTTAACCTTGTAACTTCATG
AATTAAACATTCCTTGCATGCATCTTATGGGTAAAAAGATTAATGTTCCA
TCAAATTTATTTAACTGTTACTATTGAATGAGGTGAAAAGTGAGGGGTGG
TGTCTATATAATTTACAAGACAATTTATTTTGGGCTTGCACTGTCAGTAT
ATATGACTGATGTCGTCTTAGTCTTCGTCGCACTTGACAGCTCTTTTCTA
CCAGTGACAAACTTGCTATAAAAGAAATATATTTTTAAGAAATAATGTAC
ACCCTGTATATCAAACATACAATTATTTCAATGTTCTTAAGTTTTCACTT
AAAAGCATAGTTACAGACAAAATTTTTCTTTTGATATCCTGTTTCTGAAC
TTATATTTCAGGCTCAAACTCTAATATTTTGTGATGGAGTTCTGGGATCA
CTTGCTCTTGAACTGAAGGGATCAAAGGACTTCTCTAAGTTATATGCTGG
CATTGCCATACTTGGCTACATTGCTTCAATTGCAGAGCCTATTAACATTA
AAGCTTTCTCTCATCTTCTAATGTTCCTTTCCCATCGATACCCTAAGGTT
TGTGCCACTTGTAAAACGTTATGTTATTATCCTTTACTCTCTCCGTCCCT
TCCATTTGTTAACACTTCTTTTACATTCCTTGACACACATTTTAAGATGT
ACATAAATATAATTTAATAACTTATTTTTGAAATTTTCTTTTTCTGAATA
AATGTTTGAACATTAAATTTTTATTTAGAAGAAAAAGAAGTTAAAATAAT
TTATGAAGCTATACTATATAGGAGTTTTTGTGCTACCCCCTCTCTCTAAA
ATGTTAATTATCCAAAGGGACCGAGGGACCGAGGGAGTATTACCCTGTTA
AGAGTTTGTATCAGTTTTATGCAGCACATTCGATTCTGAAATTTGAACTT
CACATATTTATTGTTCATTTGATTTCATGTAAAATTTGGTTTTAGAAGTA
CTTCAAATCCTGGATAAGGTTCATAGTTTCATGTAAAATTTTGTGTTTAA
AGTACTTCAAAATCCGAGCGTTTAATGTTTTGTTACATTGAGATTTGATT
GGCGCAATTTTGCATTCCATTATGATACAAATAACTTCAGATGAACTTTA
TTGTTTTCATAGGAATTGAGAAAGTAAATAATATGCAAGTATTCGTGAAT
AGCTGAACTTATAAATCATGTGATGATTGCCTATTTATTTATCAACAGTG
GTTATTAGTTAACAAACATTTTAACTGCGTGTTTCGTTAATACATATGAT
TCAGATTCGTAAGGCTTGTGCCGAACAAGTATATCTCGTCCTTCTGCAAA
ATGGCGACCTTGTTGCTGAAGAAAAACTAGAGAAAGCACTTGAAATAATC
TCTGAGACTTGCTGGGAAGGTGATATCCAAGAAGCAAAGCAACGTAGATT
AGAACTTTGCCATACAGCTAATATAGAGAGTGGGCAACTTGTTAGTCGTG
GAACCTCTAGCAAGGATGGTGATAGGCTCACAACTACAGATGAAAATGCA
ACATACTCCTCATTAGTAGGTTCTGCTGGGTTTTAAGCATTCCATTCAAA
ATGCAAACTACTTGGTTTTGCCTTTTGTATTATGCAAGTTGGCCTCATCT
AATTTTTCAGACTTGAGATGAAGAGCAGAAGTCTAAGAGATGATGATACT
ATAGAGGTCATCATCCAAATATCCAATCATCAAACCACTTCTTTTATTAT
TCTTGATATCGCTTTTGTCCAAGTTAAAATCAAGGTGCTTTGGGCTTACG
TCAAGAATGGAAGACGTGTCAACACAAAAGTGGTTGTTGTATAACC
Sequence Length:
12496
Sequence Checksum:
7bbcf1fd9c8ea5751b3c9393d8d8784b
View location in JBrowse:
Cds:
>DCAR_015895cds ATGGAGAATGTAACAAGAGCATCAACACTAGCAGAAGAAGACGAACAAGA TTCAAAAGAGGCGGTTCTGCAACGATACTTTCTTCAGGAATGGCAGCAAG TCAAGTCTATTCTCCACTCCATTCTCTCCAATGGCCGTGTCACCGATCTC TCTTCCGTTCGCAAAATCCGATCCATTATGGACAAGTACCAGGAACAGGG CCAGCTGCTAGAGCCATATCTGGAAAGCATAATTTCTCCTTTAATGTCCC TTGTCCGTTCAAAGACAATAGAACCAGGCCTAGCTAACAATGAAGTTCTT GAAGTGATTAAGCCCCTATGTATTATAATCTACTCGTTAGTTACAGTTTG TGGTTACAAGGCTGTTATCAGGTTCTTCCCTCACCAAGTTTCGGATCTGG AATTTGCTGTATCACTTTTGGACAAATGCCATGATAGCAAAGCAGGGACA TCATTGAGGCAAGAAAGTACAGGGGAGATGGAGACAAAATGTGTAACACT GCTATGGCTATACATACTGGTTTTGGTTCCTTTCGATATCTCTTCTGTGG ATACAAGTATGGCAGATAGCAATTATCTTGGTGGAGATGATTCACCTCCA CTAGTAACTAGAATACTAGGATTCTCTAAAGATTATCTATCAAATGCTGG TCCTATGCGTACCATGGCTGGGTTGCTCCTCTCAAGGCTTCTAACCCGCC CAGACATGACGAAGCCTTTTAACAGCTTTATTGAATGGACACATGACGTT CTATCCTCTGTCACTGGAGATGCTCTACATCACTTTCAGTTACTTGGAGC TGTTGAAGCACTGGCAGCAATTTTTAAGGCTGGCAATAGGAAACTGTTAA TGAATGTGGTTCCTGCTGTTTGGAGTGATTCGTCTGTTTTGATCAAGTCT GATGGTGCAGCTCGGAGTCCTTTACTGAGGAAGTATTTGGTGAAATTGAC TCAGCGGATTGGGCTTATTAGCCTCCCTCATCGTTCACCATCCTGGCGTT ATGTGACAAAATTTAAGACCCTCGGGGAGAGTCCTCTGTCTGTGTCTAGT ACAAGCGGCTATGGCGTGGATCTGGATTCCCTAAAATTAGCCGTAGAAGA GAACCTGCACGAGGAAGAAATGGATGTTCCAGAAATTGTAGAAGAGATGA TAGAGTTATTGCTTTCAGGACTGAGAGATACAGATACTGTTGTGCGCTGG TCTGCTGCAAAAGGTATTGGTCGCATAACTTCGCGTCTGACGTTTGCCCT CTCAGATGAAGTTCTTTCGTCTGTGTTGGAGCTTTTTTCTCCGGGAGAGG GAGATGGTTCCTGGCATGGAGGATGCTTGGCGTTGGCTGAACTAGCACGT AGAGGATTACTCCTACCCATCAGTCTTCCTAAAGTATTACCTGTTGTTAT AAAGGCATTGCATTATGATATTCGAAGGGGCCCACATAGTGTTGGCTCTC ATGTGCGTGATGCGGCAGCGTATGTTTGTTGGGCTTTTGGTCGTGCATAT GCTCACACTGACATGAAAAGTATCCTGGAACAGCTTGCCCCACACCTACT AACAGTTGCATGCTATGATCGCGAGGTTAATTGTAGACGAGCAGCAGCCG CTGCTTTTCAGGAAAATGTTGGTAGACAGGGGAGTTATCCTCATGGTATT GACATAGTAAATACAGCTGATTATTTTGCACTGTCATCACGTGTAAATGC TTATCTTCATGTTGCTGCCACTATTGCTCAATATGATGGTTACCTCTATC CATTCATGGAAGATCTTCTATACAACAAGATCTGTCACTGGGACAAAGGC TTAAGAGAGCTTGCTTCAAGTGCACTTTCTGTTCTTGTAAAATATGATCC CGAGTATTCTGCAAATTTTATTCTGGAGAAAGTGATTCCTCGCACTCTCT CATCGGACTTGTGTATGCGTCATGGTGCAACGTTAGCTGCTGGAGAACTT GTTTTAGCTCTGCACAAGTGTGGTTATGTTTTTTCCACAGATAAGCAGAA AAGTATTGCTGGTCTGGTACCTGCAATTGAAAAAGCACGGTTGTACCGCG GAAAGGGTGGAGAGATTATGCGGTCTGCAGTTTCCCGCTTCATTGAATGT ATATCTTTGTCAAACGTTTCTTTGCCAGAAAAAACAAAGCACACTCTGCT TGATACTCTGAATGAAAATATGAGGCATCCAAATAGTCAGATTCAGAATG TGGCTGTTGAAGCCTTTAAACACTTTGTTCTAGCATACCTTGGTAAGACA ACTAATAAAGGTGCCTATGATATCACTTCTAAATACTTGGAACATCTGAC TGATGCCAATGTTGCTGTAAGAAGAGGATCTGCATTGGCAATAGGTTCTT TGCCCTTTGAGTTTTTGGTAACGAAGTGGAAGTCCGTGCTTTTAAAGCTT TGCAGTTCTTGTGCAGTCGAGGAGAACCTGGAAGACAGGGATGCTGAAGC ACGGGTTAATGCCGTTAAAGGACTTGTCTCGGTGTGTGAAACTTTATGTG CTACCAAAGAGTGTTCACAGTTTCTTCTTGAGGAAGATGTTGTGTCTCTA TATCTTACGATCAGGAATGAAGTGATGCAGAGTTTACTTACAGCTCTTGA AGATTACTCGGTGGATAACAGAGGTGACGTAGGCTCTTGGGTTCGCGAGG CTGCAATGTATGGACTTGAGAAGTGTACATATATTCTATGTAAAAGAGAT TCATCTAAAAAATCACAAGGCTGCGATTCTCAGGATCAAAATAAGGGACA GGTGAATGGGAATGAGGAAATGCAATGGTTGTTTGATGCACATATTGCTG CAAGTTTAGTTGGAGGCATTGCCAAACAAGCTGTTGAGAAGATGGATAAG ATGAGAGAAATAGCTGCTAGGGTTCTCCATAGGATTTTATATAATGAAGC AATTTTCATCCCCTTCTTACCTCATCGGGGAAAACTGGAGAAAGTTATAC CCCATGAAGCAGATATTAAGTGGGCGGTTCCTACATACTCATATTGCCGT TTTGTTCAGTTACTACAGTTTAGTTGCTACAGTAAACATGTGACGGCCGG ACTAGTTATTTCCATTGGTGGCTTACAAGATTCTTTGAGAAAGACATCCC TTAATGCTTTACTGGAGTACCTTGAAGGCACTGAAATTAAAGGCTCAAAA GAAAGCATCTCAAGGGAGCTAAGTTTAAGTGAGGACATTGTTTGGGTACT CGATAAGTACAGAAAATGTGACAGAGTCATAGTACCCACCTTAAAGACCA TCGAGATTTTATTCAGCAAAGGGCTGTTCCTAAACTTGGAGGCTCAAACT CTAATATTTTGTGATGGAGTTCTGGGATCACTTGCTCTTGAACTGAAGGG ATCAAAGGACTTCTCTAAGTTATATGCTGGCATTGCCATACTTGGCTACA TTGCTTCAATTGCAGAGCCTATTAACATTAAAGCTTTCTCTCATCTTCTA ATGTTCCTTTCCCATCGATACCCTAAGATTCGTAAGGCTTGTGCCGAACA AGTATATCTCGTCCTTCTGCAAAATGGCGACCTTGTTGCTGAAGAAAAAC TAGAGAAAGCACTTGAAATAATCTCTGAGACTTGCTGGGAAGGTGATATC CAAGAAGCAAAGCAACGTAGATTAGAACTTTGCCATACAGCTAATATAGA GAGTGGGCAACTTGTTAGTCGTGGAACCTCTAGCAAGGATGGTGATAGGC TCACAACTACAGATGAAAATGCAACATACTCCTCATTAGTAGGTTCTGCT GGGTTTTAA
Pep:
>DCAR_015895pep MENVTRASTLAEEDEQDSKEAVLQRYFLQEWQQVKSILHSILSNGRVTDL SSVRKIRSIMDKYQEQGQLLEPYLESIISPLMSLVRSKTIEPGLANNEVL EVIKPLCIIIYSLVTVCGYKAVIRFFPHQVSDLEFAVSLLDKCHDSKAGT SLRQESTGEMETKCVTLLWLYILVLVPFDISSVDTSMADSNYLGGDDSPP LVTRILGFSKDYLSNAGPMRTMAGLLLSRLLTRPDMTKPFNSFIEWTHDV LSSVTGDALHHFQLLGAVEALAAIFKAGNRKLLMNVVPAVWSDSSVLIKS DGAARSPLLRKYLVKLTQRIGLISLPHRSPSWRYVTKFKTLGESPLSVSS TSGYGVDLDSLKLAVEENLHEEEMDVPEIVEEMIELLLSGLRDTDTVVRW SAAKGIGRITSRLTFALSDEVLSSVLELFSPGEGDGSWHGGCLALAELAR RGLLLPISLPKVLPVVIKALHYDIRRGPHSVGSHVRDAAAYVCWAFGRAY AHTDMKSILEQLAPHLLTVACYDREVNCRRAAAAAFQENVGRQGSYPHGI DIVNTADYFALSSRVNAYLHVAATIAQYDGYLYPFMEDLLYNKICHWDKG LRELASSALSVLVKYDPEYSANFILEKVIPRTLSSDLCMRHGATLAAGEL VLALHKCGYVFSTDKQKSIAGLVPAIEKARLYRGKGGEIMRSAVSRFIEC ISLSNVSLPEKTKHTLLDTLNENMRHPNSQIQNVAVEAFKHFVLAYLGKT TNKGAYDITSKYLEHLTDANVAVRRGSALAIGSLPFEFLVTKWKSVLLKL CSSCAVEENLEDRDAEARVNAVKGLVSVCETLCATKECSQFLLEEDVVSL YLTIRNEVMQSLLTALEDYSVDNRGDVGSWVREAAMYGLEKCTYILCKRD SSKKSQGCDSQDQNKGQVNGNEEMQWLFDAHIAASLVGGIAKQAVEKMDK MREIAARVLHRILYNEAIFIPFLPHRGKLEKVIPHEADIKWAVPTYSYCR FVQLLQFSCYSKHVTAGLVISIGGLQDSLRKTSLNALLEYLEGTEIKGSK ESISRELSLSEDIVWVLDKYRKCDRVIVPTLKTIEILFSKGLFLNLEAQT LIFCDGVLGSLALELKGSKDFSKLYAGIAILGYIASIAEPINIKAFSHLL MFLSHRYPKIRKACAEQVYLVLLQNGDLVAEEKLEKALEIISETCWEGDI QEAKQRRLELCHTANIESGQLVSRGTSSKDGDRLTTTDENATYSSLVGSA GF*