| NCBI Gene | ![]() |
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| Relationships |
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| The mRNA, XM_017402631.1, is a part of gene, LOC108227478. |
| The genetic_marker, MK005111 K2555, is located in gene, LOC108227478. |
| The mRNA, XM_017402632.1, is a part of gene, LOC108227478. |
| The mRNA, XM_017402630.1, is a part of gene, LOC108227478. |

| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |

| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017402631.1 | XM_017402631.1 | mRNA | DCARv2_Chr6:26583673..26593104 |
| XM_017402632.1 | XM_017402632.1 | mRNA | DCARv2_Chr6:26583673..26588381 |
| XM_017402630.1 | XM_017402630.1 | mRNA | DCARv2_Chr6:26583674..26589840 |
CTATGATTTTGGACAAAAAATCGTATTGCATCGCGCCATGCTTTGGATGC
GGGCTGACTGTGCAACGAATATGCTTGCCTTGAGACTTGAGTAGCTAAGA
ATATATAAGAACTAACAAAAACCCCCCAATTGGATCAGATTCTAGGGTTA
GGGTTCTTCAAACTATAATTTTACTTCAATTCAACCAAAATTTCCCGAAA
TTCTCGCAGCAATGGATCTAACAAAGAAGCGGAAGCTCGAGGACAACGGT
CTCCTCCAGCCAATCTTCGATCTCCCTACCGCCGATGTTCGCAAAATCAT
CTCCTCCTTCACTACCGACCAGCTCCTCGACATCGTTCAAAACGCCGCCG
TTCGGCACCTCGACGTGCTGGACGCCGTGCGATCGATCGCCGATCAAGAC
TTGTCGCAGCGGAAGCTCTTCATTCGAGGCCTCGGTTGGGACACAACCAA
CGAGAATCTCGCCGCAATTTTTTCGGCGTATGGAGAGCTCGATGAAGCGG
TTGTTATACTCGATAAAGCTACTGGTAAGAGTAAAGGTTTCGGCTTTTTG
ACTTATAAGCATATTGATGGTGCGATTAGGGCTTTGAAGGAGCCTAGTAA
GAAGATTGATGGTAGAATGACGGTTACGAATTTGGCGAGTGCGGGACCGG
GTGGCGGTCCGGTTATGCAACAGCCGGTCGATGTGTCAAATAGGAAGATT
TATGTTGCCAATGTTCCGTTTGAGATGCCGGCGGATAGGTTGTTGGGTTT
TTTTTTGTCTTACGGGGAGATTGAGGAAGGGCCGTTAGGGTTTGATAAGT
TGACGGGGAAGAGTAAGGGGTTTGCACTTTTTGTGTATAAGAGTGAGGAT
GGGGCTAAGGCGGCGTTGGTGGAACCGATTAAGAATATTGATGGTGTTCA
GTTGAATTGTAAGTTGGCGATTGAGGGGAAGAAAGGGAAGGGAGGTGGTG
GTGTGCAGGGGGAGGTACATGGGATTGGAGTTGGGGTTGGGTTGCAGCAG
GGAGGTGTGGTACAGGGTTCGGGTGTCGTGGGGCAGTATGGTGGGGCTGG
TGGAGTGACTGGTTATGGTGGTGTGGTGTATCCAGGAGGATTACAGGGGC
CTTCGCCACAAGTCCAGCATTCTCAGAATCCATCGTTTGCGGGTGTTGGC
GGTCCTGGTTATTCTTCACTGCCTAGTCAAGTACCGACTTCCATCGGTTA
TAATGGCAGCTATGGTTCTGTTGCTGGTGTTGGTGCACCCTATGGTAGCT
CACAGTACGGTGGCCCTGGTGCTACAGGGTACGGAGGATTAGGTGGTTCA
GCTACCCGAATGGGTGCTGGAGTTGGTGGATTAGGTGGTGCAGGATTAGG
TGCTGGGGGTTTAGGTGGTGCAGCTACAGGTTTAGGCCGTAGTGGAGCTG
CTTCGGGTCTGGGTGGCTCTGCATCTGCACTGGGTGGTTCTGCTGCTGGC
TTGGGTGGGCCTGGTCGTATGTCTTCGCTGTATGGACTTCAGCCGAATTC
AGCAGGAATAGCTGCAGGAACTTACTCTGATAGTGCACATTACAGTTTGT
CTGGTGGCTCTGCATATCAGAACCAAAATAACCCGACGGCAGGGGCATCT
CCAGCAGCTAGAGGGCCATACAGTGGAATGTACCCTCCTCGATATTAAGG
TAGATTCCTTCTTTCACTCTTCTAGATTGTGCTTCTTATATCATAAGCTG
TGCCTATTATTTGTTCTTGTTATCGGTTGTCAATCAGCCCTTTTGCTGTA
CAGATTACCAGCATTGAAATTCTCTTCCTTGGTTATGGTCGGTTAGCTCC
AACTAAATGTGAATAGTTTCTGCATTTTTTCTGTTAGATTCATTATTTTG
TCAATAAGTTTATCTCTGTAGTCGATAAATTGAGTACTTTCTGTGCGTTA
TGTTCTTTTGTTGATACATTTGTCTCTATAGTCTGTTCTTTTGTTCGTGT
TGGTTTTTGTTTTTTCGTACTTATTTGTGACTTTCTTTGTTTTTTCGTAC
TTATGGTAGATCTTTGTCACTGCCTACTAGTATCATTGTACTAGGTTCAT
GGACCTTTGTGCAGTATGAATTACTCTGCATAGGACATTTGAAAGCTTGT
CGGGGTATGCGGACAGGAAGATATATTGATACGTCCGCATGCCTTGCTAC
AGTGCTTGATTGCTGAAACATGTGTTTAGTTTTTCTTCCTGTACCAGCAT
ATTAGAAACTTTAAATCAAAACAGAAGCGTTAGTTGCTCACATATCTTGG
ATGTCATAATTTCTGTTTTTTGCCCAATAAATAGTTGTTGCAGAATACAT
GCATGTTTGTTAATTTAATTTTCTGATTTCTCAATTGAAAGTGATGTTTG
TAAGCTGTTATGCAATAAAAAATAATTGGTGTGCAGTATTTTATATTCAC
TATAATATACAATATATATCACTAAGGTAATAACCAAAAAATTATCGAGT
TACCATAAGTTTCTTTTGCATTGAAGTGAACATGTTTTTTTTGGGATCTC
GAATTGGAGTATATTGTCTAGTCCATTGTTATTGAGTCGACGACTAGTCG
GTCGCCCAGTCGGTGGATAGAAAAACTCGTTGAGCGACTTGAAAGAAAAG
TCGCCCATGGGCCAAATCCGACCCGACCCGGTCCAAACTAGGTTAAACCC
GACCCGATTACAATTTTTAACCTACACTTACCGTAAATCTTCATTCGCTG
CTGCAAACATTTGGAAACATCTGGCAGCTTCTCCCCTTCGTCTCCTTCAT
CAGCTCATCAGCTCCTCAGCTCCTCTCCGGTAAGCTTCTCTCCTTCATCT
CTCCTCTCTCTCCCTTCTCCTCTTTCTCTCCTCTCCTCTCTCTGTCTCTC
TTCTCCGATTTTCTCTCTGATTTTCTTTAGTTTTCAATCACCCCGCTCGT
ATGTATATACACACGGTGGCGTGTGTATATATTCTGGGTTGGGGACGCGT
GTACACGTCTCTCGTACATCCACACAGACCGACACCACGTACTCTTAGTT
TTAATTGTTTTTGATTTACTTTTATATTTTACTTTTCAAAATTAATTTTA
AATTCTAATTTTATGTAAAAACATTTATCTAAACCGTTTTTAATATTTAT
TTTTTTATCCTTTTTTTCCTGAAAAACTATTTTAATTTTTACCAAGTTTT
ATTATATCAAAAACGTTTTAGTAATTATTTTTATTTAATATTAATTAATG
TTGATTAATATTTTGTTTCAACTTTTATTTTAAAAAATTACATTCTAGTT
TTAGTTTACTTAAATTTTATTTATTTTATAAGTCCAGATTGATTAAAAAC
GTTTAATTATTTTTAATTCATATTTAATTTAAAAAAATATGGCTTTTTTT
TTAATGTTCTGAGCTTTTACACGTGATCAGCAGCCTTGCCCCATTGATTT
CCAATTGTTAGTTAACACAAATTTGCGGCCAGAATGAACGAAAAAATTTC
CAAGTAGTCCTGGAACATCAACGTTTAAATGATTTGGTGTATGTTCAATA
CAACCGGAAGATTGATTCCCGATTCAAAAAGATGCGTGAACTTGGAGAAA
AATATAATCCACTAATATTTGAAGACTTGGAGTGGACTAATGATTGGATG
AATGATATTGAGGATAGGTTTTGGAGTGCGGTGGATATAGCTTCGGGTGC
CTCACAAGGACTTGAGGGACGCACTTTACCAAGAAAAGCTAAAGGTGGTT
CAACTAGTGATATGCGTACCTACACTCGACGTGGCACTAGTTCGACACTA
CATGATGATGATGATGATGATGATGATGGATGGGGGGAAGATGAAGACCA
TACTCCTATTGATGATATGGAGGTGGAAGATGACTATGGTGTTCCTCCCG
ATCCATCCTTGAAGAATACTCAAGAGGGAGATGAAGATTTCATGCTTGAT
TAGTTTATTTCACTCATCTATTATGTTTTTATTTGCTTAGGGATGCTTAA
CTTTTGGTATTTGAACTTATTGTCTCTTTCCTATTTGAAATATTGAATGA
TGTGTTTTTATCTATATTATATAATCTTTACTATATATATATATATATAT
ATATTTATGTATATCACGACTTGTCGACTAGTCGATTCCAAGGTGTCCGG
GCGCCGAGGCTCGACTTGTCGACTTAATAAGCATGGTCTAGTCATTTGAG
TTCTTGAGAATTGGATTATTTAAGAGAAATAAGTGACCACTGCTATAGAT
TTAGATCTATAGGACATCTCTAAGCACAACATACTCATAGTATTTCTCTG
TTCTAGTATCCTAAATTAAAGTCCTTCCGAATGGTTTCACATTATATTTA
CTACATCGAATCCTGAACTATGCTGCCCTTTCTGGATTTATTTTGTGTTT
TTTTTGCTTGCGTTTGCTCCTCGTTTTAACATATTTGTATCCTGAATCCA
TGATGTCATTCTCCCTTGTATATATACATATACATATACATATACAGATA
AATAAATACATATCTTCCACAATAAAGAATGTTTTTCTTCTTCTTGGATG
AAATTTTTAGAGATAATATTTTTGCAGGAAACCATATTCTGCAGATGAGC
GTGTTTGCATTTCGAGCTGAGTTGGCAATGATGAACTATTTATGTGAATA
TGTCTTTTTGTATGCATGCATTTTCTACATTCATGTCTCTGTTTACATTT
TCTGGATATTGAGTTACTATTCAAATGTTTGTTTCAACGCAAGATATGTT
TTTTCCTACTACGCTTTATGTGCATGAATGTTTTATGAGCCTTGAAGGGA
ATCATTACAATTATGTAGTGAGAATCTTATTCTGTTTTGGAAACAGTGAA
TCTTTAATTGGACCTGCTACAATGAGAATGTGGAATCTTAGTAGTACTCA
TTCAAGCAGGCCCTTTTACACACAAGCCGAAATTCTATTGCTTAAATTCA
TTTTTCTCCGCCCAAGTCTATATTTTTTTTTCCTCTTTGCACAATATGTA
TTATTTTTACTCTATTTTGTATTCTTTAACCTTACTAGCTAAACTATACG
ATTCCATTTTTCAATTTTTAGTCCATGTTGCTAGGACTCTTTATTTTACC
TTGAGTACCCATGTTGGACATTTGACACTCGAACATGGGTACGGACAGAC
AACAATTCATTTTGGGCCAAAAACATGCATAAATTTCAGAACTTTGCCAT
AGTCCAAACTCCAACACTCAATACAGTGTCGTTGTTGGGACACTTTAATC
TATGTATGGGAACTTATTATGTGAATGTCTATTGAACATTTGTAATTGAA
CCTCATTCGTCTTTGATTCTTTTTCTTGGGGATGTTGCTGCCTGTTTCAT
AGTTGACCTACATAATAAACTTGTAAAAGTAGGTCTAAAACATTGTGATT
ATATCTGCAGAGACTGTCTCATGTCATAGAGTATCATGTAATATATTATG
ATATTAGGCCTTATAATGCTAGTTAAGTTGTTCATGTTAAAGCATCATTT
CAAGAATTGTATGTCAATAATATAACCTTATATTTGGCTCTTTTGCAATA
TTTACCTGAAACAGCACTGTAACAATCCCCGCTTGATTATATTTTTGGAT
TTATAGAAGACAAGAATGAATTTAAGCTAATACATACAACACCGGTAGAT
AAAGCACTAAAATGAATCTTTGGATTTCTACTTTTCGCCGTAATTCTACT
TGTTTGTTCTCTCTCATGTTCCGACCTTATTAATTGGTCATGAATTTCAT
TATGGTGTGTCCTCAATTTCACATGAAAGTGATATTTGCCTTAATGATGG
GTTTGAGTGAATACATGTTTGATTCAGGTGTATGACAGCTTCGTTGGACG
CAGTTGCGCTTATTGCTTCGGATGATTGCATGAATGCAGACAATATGTAC
TCTGGGTTGATGAATGTCCTTATGTGTTTGGATTCATCTTCACTTCGTCT
GCACATTATGACATGAATTCTTCATTTAGTTGGTTGTTTAAATGATTAGG
TAGACTGTTTTTGTACTTTCTAATCACTGAACTTTATGAAAAGTAATTGT
GTATGAAATAAGTAAGAACTCTGTTTCAGCGTATTTGTTTACTGACGAGT
GTTTAAGATTATCAGATTGTAATTGGATCATGTACTCTGTGATGATTGTT
ATGGTTCTAACTATTGAGTGTTGAACATGAAAATTTATAGTATACTTGGC
CGGAGTTTGTGATTGTATGACATTGTGTTTGCACATCTCTTTTCCTCAGA
GTCATTTGACTAGAATATAATTTTCTTTCTCTTTATCAAGTTGTTATTTG
TTAGGCTGGTGACTTCTGTTACTATGAGAACATGTTCTCTACATATATAG
TTTTGTCTCTTAGTATTGTGCAAGATATGAGATAGCTTTCAACATATCTT
GAGCTAGAAAATGTTGAGTGCCTTTCGAGGTGGAGTACTTGGTACTTAAT
TCTTCTAATTACATGCTTTAGCAGATATCTAAATGATATTAATGGCTTAG
ACAGCCAAATATGCGAAATAGGAAAACCTTTTAATGCTCGAGTGAAGGAT
TAGTATGTCTAAGTGGTGACTTTTGCTTTTCTGAACAATTGCATTTCACA
TTTGCTGTTTGACTTTGCTAATTCTAGATTCCTGTGATGAGGTCAACTAT
TTTTACTGTATTTAAATGTAATGATATAGTTATATCTAAAAAACAAATCA
GAGACCCCATGTAAAGAAGATATAAATGCTGAATTGAAACATTTTAAAAG
TGAAAGATATGTGTTAGAAAGGGTAGGATTTTCAGTCTGAGAAGCTGCTG
GACTGTAGGTAGCTCAATTAAAACTGTGCTATAACTAAACTATATCAAAT
ATAAACGTATATATCATAAACCAAAACTGCGAAAATTACAAGCTGCACTG
CTGTTCACTTAAACAGTGTCCTTAATATCCCTGCCCCCCTTCCCCTCTAC
ACCTACCGTGTTTATATTAATTGAACTTGTTAAAATCTTGAGCTTTATAT
CTTACTCATTAGTGTTCATTTGTGTTATTGCTCATTCATTAAAATGGGGA
TCCTAAATTTTGGTGAACATTATGTAGTGTGTGTGTGTGTGTGTATATAT
AGACACACACACACACATACATGATTGCTTGCTGCAGAATCCAGCATTGT
CAAGCAACCATTGTAAGATTGATGACTGTTTCGCAAGAACAGGAAATGGG
GACTCATTATGAGCTCTTACTCTTTTGAATACATCTAGTACTGCTACTGT
TTAGTTGTGTAAGATATGCGTATCATCTTCAACAGTTTGTCATCTTTGCT
TATACAGTTTTACGTTATAATCCTTTTTTTCATGAATTAATTAATATTAC
CAACTAGTATCACATTTAGCAACAAAAAAAAAAAAATAGTATTGATCCAG
CTTGAATTATAAGCTGTCATCTTTTTAACTGTCCAAAATCAAATAGTTGT
CATAGAAATAAATAGATCTGCAAGGAAGTATTGGACTAAGGCTTGAACTG
TTTTCTATATGCCTTTCTGGGATAAATCTTTGTTGTACTTTGCAATTATG
ATAATCAAGTTGCTTTGAAAGCTAGACAGGAAAGATGTATGGTTATCTGT
ATTAAGTTGCTGTTTTGAACTGCTATTGCCATCTATTAATATATTTGGTT
GGTGCTATTTCTGAAGTAAAGGATTCCATTTTTTTTATTTCTAATTTCCT
TGAAGCTGTAGAGTTGTTGATATAATTTTGAAGGCTTTAGACTTCTGTTT
CTGTTTGCCATCTGATTTCTGCTTCGCCAGTACTTGTTTATATTTGCTGC
TCGCTCTTTATGATGTGGTTGCTGCCTGGTTATAGAGGAATCTGATGTTG
ATTTATACTTCTAAGTTCTATACATGTGTTCACTCTTTTTTTTCATTTTT
CAGTGTGAATTGTTTTATTTATTTCCTTTCTACTTTTAGTGCACAAAGTT
AAAGGTTCTCTTATGGTGGGGAAATTCTTTAAATACTCTTTCCGTAATTT
TTTTATTTTAAACTTTCCTCGTCATAGATTACCAGCANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAAAAAAATCCCCCAACACCTCAAGTCTCACACACAGCTGGAAAC
TCCAAATTGTTGAATTTTATTCTTTGATGGTAGGAAGTGAAGTTAAATTT
GCTTGTCATGTTTAATTTTGAAGCAAATTGCTCATCATGTTGAATATATC
TTATTTTGACAATTTTGTCTTCACTTGCCTGTACCCTGAAGATTTCACTA
TGTTCATGCTGCATTTGTATGCATGTCATGTAAAATGCGTGAGGTTTTCA
TATATGCTTCCTTAATGAAATAAACTCTACAATTATATATGAAGGTGAAA
GTGGTAGCTTTTTCTAGGATCGACTTTGAATTAATTTATAAGCTTTTGGG
CATGTGTTGGAAAGGGGACATTGTTTTTTGTAGCTGGCACCAGTTGGCTG
TATGTCAATAGAACAATATGTGGAACAGTAGGTTCCTTTGTTAAAGATAC
TCTCTACTTGGTGTCTGGTGATATAAGCTTCACTCGGTGGTTGGGCAGCT
TCTACTCGTATACTATCATTTGGTTGTGACAGTTGTAAGGAACAGAAGGA
AACTATGTACAATTCTGATCATGCAAAGCGGTTAATTTCCGTTGTCCTTG
AAGTCTGTAAGTATATAGTTTTATGACTGTATGGTCAGAGTTCATTATGA
ATATGAGTTGATGCTGGTCGCTTTCCTGATATCTAGAAGTTAAATGTCAG
CAATCCTGAAGGTTTGCTTCTGAACTTGTAAGTTTAGACGCCCTTACCTA
TACAGGCTATTGACTGATTATATACCAGTTCCAGCCCCCACTGTGCCCCG
CCCTGGGCCTTGTAAGCTTTATTCATCCAGCTATTAGGGAAGTACTGAGG
AAGCCTATGAAACAAGGAGATAAAATGGCGCTTGAGAATAGTGGCCAGCA
TCTTTATTTGGCAAGTAAAGCATTCCATAGAAACTGTTTGATGAAATGCA
AAGGAAAATGTACCGCAGGCACTTGCCCAAAAATTAGGCCTTTCAGCGAA
AGATCATGAAAATGTTTTGTAGTACTTGTAAATATGGCCTTGAGACGGAA
ATCGTTTTTTGGGTGTTTTGTTTCATCCATTAGGCTGTATACGTTTTCCC
AAATAAAAAGGCAAAAAATTGTGATATTTTA