DCAR_001729 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_001729

Identifier:

DCAR_001729.gene

Locus Tag:

DCAR_001729

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_001729, is a part of gene, DCAR_001729.
The genetic_marker, MK003338 K0782, is located in gene, DCAR_001729.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_001729	DCAR_001729.mRNA	mRNA	DCARv2_Chr1:19919435..19928265

Sequence:

ATGGCGGCGATAAAGGGGTTGTACGGATCAGTAGACGAGTTTCTAGAGCA
GTGTAAGCAGTCAGGTGACTCTGCATACACTGCTCTCAGATCACTTCTTG
AGCGTCTCGAGGACCCGAATACCCGGACCGAAGCTCGGATCTTCTTCGCG
GGTCTCCAGAAAAGATTCCAATCCAAGGAATCTATCGATGAATGTCTTGA
CAATTATCATTTTCGAATCCAAGATATCTTCATTGAGCAACATCAAGAAG
GTCACCTCTTTTAGCCCTTTACTTGTGTATCTATTGATTTTGTTTGTGTG
TATTATCTATTATGGTTTTATGAGTTTTGGGTGGTTATGTGAAACCCCAT
TTCGTGAATTTGTGAAAAATGTTGATTTTACGGGTACCAGTTATGAATAG
TAAAACCTGTAATAGTGATAAGATAGTATGGTGAAAATTGGTTACATGGT
TAGGCGATTGGCTGAAAATGGATTAATGAGGAGTTATCTTCTTTGACGTG
GACATACTAATTTGGAGTCTGGCCTGTAAAAGGAATTTGCCTAATAAGTG
AACCCATTAGGATATTAATGTGGATTTGTTCTACTCCACGAATGCACGTT
ATTAATGTATGTTGGTGCAAATTTGAAGTACTTTGTCTCTGCCTAGAGTT
TTGTTGGCATCTTATTAATAAAAAGGTCTGTGCGGGGGAGTTGAGGATAT
GGTCTCAAGAAAACAGGGAATTGGTGTGATTTTACAATACACCAAAATGA
AGGTGCATCAAATGCTTCTTAACATCATTGAAATAAATTTTAGACACGAG
CATGAGGACACGACAAATGTTACATAAATAATATCTTTTTTTAATATTAA
GAATATATAAAAATATATATATTTATTCATTTTTATTATATTTAACTTGT
GCTCGTGTCTAAAATTTGGACGGTGTTCCCGTGTCCTAAATTTTCGAGAT
TAACGAAATCTGACACTCAGATAGGTGTCATGTCGGACACTCTGAACCCA
AGTCTGAGTAACTTTGCCTTTAATCAAGTGACCTTGGGGTCATAGAACAA
TATCTGGTTCTGGTCCCGGTAAGTCTTTACTCTAATATTTAAAATTTTAC
TTAAGTTGGAGTTTGGAAGTCAAACATCCTGAACCAGATACAAGACTAGG
TTTAAGATATGTAATGACATGACGCAACTCCATAACTTAATTTTAATATC
TCAATAAAACTTGTATCAGTTATATATATTAAAATTTGGAGAATGACTTA
ATGTTGACATGTTAAATGTTTCATACACTTATGTTTATTAATTTTAATAT
CTCAATAAAACTTGTATCAGTTATATATATTAAAATTTGGAGAATGACTT
AATGTTGACATGTTAAATGTTTCATACACTTATGTTTATTAGTATGTACC
TCGGTTGGTGACTGAATATTTTTTTCTTCACCTTCTTGTGCTTCTGTTGG
AATGTGTGTGATACCATGTAAATCCTCAAAGTTCAGACTACAATATACAG
ATGAACAACAATTGTTATAGGGAGGCTATTTAATACTTACTTCATTTGTA
TTTTTACCATTTTAAATTTTCACGTAAGTAAAAATTATATATTTTTTTAG
TTTTTCTAAAGTAAATAGTGTTTTGTTGCTTCAGTTTAACTACTGGATTA
CATATCACAATATTATTTTAATTTTATTTGTCTAATTTCTTATGAAGAAC
TGTCAAGAATCATGTTGTTAGGACTGGTCTATATCAGCAGCATTACTTGT
TAACAGTAGTGTGACTACTAAGTAATAGAAGTATTGGTTGAGTATCTTAG
TGCAGTGGTATATGTGTCTTTTCTCAAAAGTTGTTACTAGTTAGCTGAGA
GTACAAATATAACGAGTAGTTGTAATCTCTAATATGCTTGATGAAATAAA
AGAAAAGGGAACTTTGTTTCACCAACTATTTTCTGCCTTCACTCTACAGT
TTATTTCCTTAAGAACTTCTATCTTCTTCTATAAGATATCTTTGCATCTC
TCTACAGCTCTGTTCTTACTCTTTTTCTCTGTTAAATTCTGCCCTAATCT
CTCTGATTTCTACTTGTTCTCTGCCATATTTATCTTTTATATTCTATTTC
TGCACTTTACTCTATGGAAACCTACAAAAAAAATCAGAAAACTTATTCAG
AAACCTCCAATTCATGACACACGTTCCCATGTTTTGTGGGGCTGCCTATA
GGTGGTAGGTGACTCGCTTACTGGCCAAGGTGCTAGAGGGTGGGGTGGCT
TGGGTACTATTAGTTTGTATTAATTTTATTGTTTACGATTTAATATATAC
TAGCTTATAACCAGTGCGATGCATGGGTGACTTATAATATTTGTTGTTAA
ACTGTATATGTTTAATATTTTATTTTATATGGAAATATATCTTTGTTAGA
ATAATGTACTCTTTTGATTAAAAAGATTTTTAAACATTTTATAAATGTGT
TTGGTTTATTATATTTTTATTGGGTATGCTAAATAAGTATTTTTTATTGG
GCATGTTAAATAAGTTTCTAATAGTTAAGCTCATCCAAAGCCTTTTAAAT
AAATAGGCCCCAAATATATGTTTTAATGAGTATGTTAAATGTGTTTTAAT
AGTTAAAAAGACCCATTAAAACATGTTACGACTTAAAAAAGCCCATAAAA
TAGGCCCAAATGCCGACCTCCCAAAACTTTCGATGTTTTGGCTTTAATAC
TATAGTACAGATAATGTTGATTTTCTGTTTATGGTAGTAGATTTATCATA
TAAATTAAATTAAATTTGAGTATGTATTTACTATTAGTGTCTAGCCCTAC
TTAAAAGTGAGGGTGGATCTGCCACTGGCTACACAGTGAAGCAATATCAC
TGTTGGTAATTAAATTTGAAACCTTCTTCCTTACTCTTGGACCTCGTGGT
TCTCTGACTATGTTGTTTACATGTTGTTTTGGTTATTCTTCATTATAATT
GCAGAACTAGCTGACGTCAAATAGAGTATGTAGTAGCCGAGTATTTTTTA
AAAAAATTTGCCACGCACAGGTGTATTATCGGCTGTCCTAATTATTGTAA
CATGTATACAGGTTACCAGAAGACTAAAAAGTTGACAATGATGGTAATTC
CTAGCATCTTTATGCCGGAGGACTGGTCCTTCACTTTCTATGAGGGACTA
AATAGACACCCTTCATCTATGTTTAAAGACAAGACAGTTGCTGAGCTTGG
TTGTGGAAATGGATGGATTTCCATTGCTATTGCTGATAAGTGGGCTCCTT
CAAAGGTTCGCAATTCCGCTTATACCACTTTCTGAGTTCATGGCACTTTT
TTTCTTTTGATTTTCCATCATCACAGTTCTACAATTGAAGAAAGAAATTG
ATGACACATTCCATCATCACAGTTCTACAATTGAAGAAATAAATTGATGA
CATCATGTGTCATTTCAAGGCATTGTTTAATTCTGAATATTAATTACTCT
TTTTCATAATGTTACAACATTATTTTCTCAGCATGCCTATATACTTTTTT
CAGCATTCGTATATATTGGATGTTGTTGGCCATATACTTCATGTGGTGAT
TTAAAATTTCACATCTATTTCCTACAGGTATATGGTCTTGATATAAATCC
AAGGGCAGTCAAGATTTCTTGGATAAATCTATATTTGAATGCCCTAGATG
AGAGTGGTCAGCCTATTTATGACGACGAGAAGAAAACTTTACTCGACAGA
GTCGAGTTTTATGAGTCTGATCTTCTGGGGTACTGCAGAGATAATCACAT
AGAACTAGAACGCATTGTTGGTTGTATACCACAGGTATCTTTTCTAGTAG
TGTGGTTCCAAACACTCTCTTGCCTACTTGTAGATGTATACCTTGTACTA
AGTGTTAATGATTCATTTACTTGGTAATTGATTGAAAGCTTTATGAGCTT
TATTTAAGGCGCTTTTGATCTGATAGGATAGAATCTGATCTCTGCCCTTG
ATTTGACTGACCTTAAGTTGTAAACTTTTGTATTGTTTATTTCAACCTGG
CATCCTCTCTTTCTCTGGTACCTTCTGTGACTGTACTTTTTAGCAATATA
TTATACTACTGTAAGAGAAATTGAACAATTAGCCCATTTGTTTTTATATT
CACTATATGTCTTTTAACTCTATTTCTTTGCAGATTCTCAATCCGAATCC
AGATGCAATGTCCAAGTTAATTACGGAAAATGCAAGTGAAGAATTTCTAC
ATTCTTTGAGTAACTACTGTGCACTTCAGGTCTGTAAAGTCAATCCCTCT
AATTGCTTGGGAAATATATTGATTCCCAAGAGTATTAGGATAAGGAGGCT
ATTAGTATATTTGTAAAAATTTAAAATTACTGACATCAAATGGTCTTTCT
TTTGTATCTGATGTCTGCAAAGCTACAGTCCTCCCAATATCATAATTTAA
AGCATAGAAATTTTACTGTACTTCCCTTCATTTTTATTCAGGGTTTTGTT
GAGGATCAATTTGGCTTAGGTTTGATTGCCAGAGCAGTTGAGGAAGGAAT
TGCTGTAATCAAGCCTATGGGGATAATGATTTTCAACATGGGAGGCCGTC
CAGGACAAGCTGTTTGTAAACGCTTGTTTGAAAGGCGAGGGGTCCGTGTT
GACAAGCTTTGGCAGACGAAGATTCTTCAGGCAAGTACAAACCTTGTAGC
AAAAAAACTTCTGTACCAGAACTGCACACCTTATGAACATTATTGTTGCA
GGCTGGTGACACAGATATATCGGCTTTGGTTGAGATTGAAAAAAACAGTC
CACATCGTTTTGAGTTTTTCATGGGGCTGGTTGGCGATCAGCCTATATGT
GCTCGAACAGCATGGGCTTATGGCAAGGCTGGTGGCAGAATTTCTCATGC
TTTATCAGTATACAGCTGTCAGCTTCGTCAACCAAACCAGGTACAAATTA
TTTTACTTTGGCACCAGGAGTGATTGCATTTACCGAGCAGAAGATGCTGA
GTTTTGCACAACTAAATTGACAGGTGAAGAAAATTTTTGAGTTTCTAAAA
AATGGCTTCCAAGAGATAAGCAATTCTTTGGATCTATCCTTTGAAGATGA
TTCTGTTGCCGAGGAGAAGATTCCATTTCTTGCTTATCTTGCCAGTATAC
TGAAAGAAAAATCATTTTTCCCGTATGAACCACCAAGCGGAAGTAAACAT
TTTCGCAGTCTCATCGCTGGATTTTTGAAAGCATATCACCATGTCCCTCT
TAGTGCAGAGGTTAGAACTAAAAAGTCTTTTTCTTTTTCGCTTTTTGTTA
CATCAACTAATTTGGTTTCAGTTAATTGTTTGGTGCTTTTGAGTGTTTGT
AGTATTCTTCTTTACTTAGTAGCAAGGTTTTATTTGTCCAAAGAGGAAAG
TTAGGAACACAAACTTTTGCTAGCATATTTAATGCCTGTTTTGACTTAAA
ACTGTCATCTGTATTGCAAGCAGTGTCCTGACTTTATTTCTTTTCAAAAT
CTGGCCAGAATGTTGTTGTGTTTCCTTCCAGAGCTGTGGCTATCGAGAAT
GCTCTTCGATTATTCTCACCAAGGCTTGCAATAGTTGATGAACATCTGAC
CCGATATTTGCCTAGGCAGTGGTTAACATCACTAACAATGGAGGTAAGTT
TTTTTTTATCCTCATTTTTCTCGCTCCTTGTTATCTCTGCTGCTTTTCAC
AATATATTTCTTTTGCAGAAAAAGGAGACTGATAAGCCTTCTGTTGATGC
AATCACTGTCATTGATGCTCCACGCCAATCAGATTTGATGATAGAACTGA
TAAGGAAGTTAAAGCCCCAGGTGGTAGTTACTGGGATGGCTCAATATGAG
TCTGTTACTAGTTCTGCTTTTGAGCACCTCTTAGGCACTACTAGGGAAAT
TGGTGCTCGTCTTTTTATAGATATATCAGATCAATTTGAGTTATCCAGTC
TCCCTGGTTCAAACGGTGTACTGAAGTACCTTGCCAAGACTGTACTTCCT
CCCCATGCTGCTATTATATGTGGCTTGCTGAAAAATCAGGTAATGTTTCC
TTTGTACATTTCATCTTACGTGTTGAGCTAAACGATATCCAGTGGATTAA
ATTGAACTGACAAGTTCCTTTAGAGTTATTATGGTAGATCTGTTTCACTA
GGAAACAGTGTGCTGTGTGTGCATCAGTGTAAAACTGATTCATATATATG
TCTACTGATTGCAGGTTTATTCAGATTTGGAAGTTGCTTTCGTGATATCA
GAGGAGGAGAGCATCTTTAATGCACTATCCAAAACCATGGAATTGTTGCA
AGGGAATACTGCACCAATTAGACAATACTATTACGGTTGCTTATTTAATG
AGCTTCTAGCCTTTCAACTCCCTGATCGACATCCACCTGCGGAGGTTTGT
ACTAACTTCACAACTGAAACGATACTGGGAAAATGTATTTTGTTCACATT
ATTATGCATAATCTGTGTCACCAGTAGTGAAGATCAAAATCAGTTAAAAA
TAAGAACCAGGGAAGTAAGTAAAATGCTGTATCATGATATAAATGCTTAA
TGCATTCATTTCTCATTAAAAAATAAAGCTGCACCAATTTGTCATAGTTC
TTATCTCTGTATGGTATTTACCTAATATTGGACACTTTTTTAGTGTCCAG
TCTTCTGATGAAATTTATCTGTTAGCAGCAAACCCATGCTGGATTTTCCG
AACCTATGTTTTAACCTCCATTTAAATCTGACCTCTGGCTTTGTTTAAGT
CATTTATGATGCATGCTTTAGGCTGTTGCATATATGGCAATACAAATTCA
CAACGGATGCTTGGTTGTGCATATTTCAATTGAAGTTGTAACTGCCAGCA
CTCTGTTACTTATACCAAAGCTTAAGATTAAGCGATATCTATGATTGAAA
ACTATGTTGTTTCCTCTATCTAGTGCTTCACTTGATACTTAATTCCAATA
TACATAGACATTATATTAGAAATTATATGTTTTGTTATGTAATGATTGCT
GCAAGTTTTGGTTTCATCTTTTATGCAGAGGGATGTTGAGACAGTAAAAG
CCAGTAATGTGATAGGTTTTTCAAGTTCTGCCATCTCAGTTCTTAATCAA
GCAGAGTTGTCAATCAACGACATAGATCATTCTAACCCTATTCACATGGA
TGTGGAGCAAAGCTTTTTACCTATGCCTACTCCAGCCAAGGCTGCAGTCT
TTGAAAGTTTTGCAAGGCAGAATGTATCAGAGGCTGAAACTGATGTGACA
CCTAGTATTAAACAATTTATAAAGACTAGTTATGGTTTCGTTACTGATAG
CAACTCGGAGATCTTGTACGCAGATTGCCCGTTAGCTCTTTTTACCAAGC
TTGTTCTCTGCTGCATAGAAGAAGGTGGAACTTTGTGTTTCCCATCAGGC
TCCAACGGTGACAATCTTTCTGCAGCTAAATTTCTGAATGCAAGTATTCT
TACAATCCCTACCTCCTCTGATATGGGGTTTAAGCTCACAGAGAAGCAAC
TTACCAGTGTACTTGAGACTGTGAGTAAGCCGTGGCTGTATGTATCTGGT
CCAACGATCAACCCAACTGGCTTGCTCTACAGCAATGAAGAGATAGAAAG
CATACTATCTGTCTGTGCTAAATTTGGAGCAAGGGTTATACTTGATACTT
CATTTTCAGGTCCAGAATTCACCTCCAAACCCCATGGGAGCTGGAACCTG
GGGACCAGTATAGCAAAGTTGAATTCTGCAAACTCATCTTTTTGTGTGTC
TCTCCTTGGAGGGGTGTTTTTGAAGATGCTTACCGGAGGTCTTACTTTTG
GGTTTTTGTTTCTAAACCAGCCGTATTTGGTTGATGTATTTAATAGCTTG
TCTGGCATAAGCAGGCCTCACAGCACTACAAGATACACGGCAAAGAAGTT
GCTCTCTCTTAAAGAGCAGAAAGCAGGAGACTTAATTGGTGAAGTTACAG
AACGTGAAACTATTTTGGGAAGTAGGTCAAAACGTTTAAAAGAGGTAATA
CCTGTTCCTTACAGAGAATATTTAATTTTTTAACATTCTGATTGTGCCTT
CAATCTAAATAAAATTTGAACCCGCGTCTTCTGTGGTAGGACACCTAATA
GGAGCAATTCTAGCTTAAGTTTCATTTTGTCGACTTAGATTTAAGAGAAA
CATTGCAAGATCCTGGACTATCTCAATTACCATTCATTCTGACTGTCCCT
CACTGCAAATTAGGCATGTTAAAAAATTAACCTGTAAAGATAAACACATA
TTGACTGTACTATGACCTATTAATTTGTGGTATACTCCTTCCATTATCAC
CTTTGACTTCTTAAGGTTTCTAAAACAGGCTTTGGGGAGAGTAACTACTT
GTATTTCAGTGTGAAAGTTCCTTATTTTTCAAAACCAAAAATTATTAAAG
GTTGTGTGTGAATAAGTTCTCTTCAAACTTGACGCATGCCTGAAAGGTCA
GAGGCAATTTAACTGTAACAGAGGGAGTACTTGCTTACATGGATATGAGT
TTTTCAATAAGAGTTTTAGTAATAATTTACAAATGTTTTACTTATGTGGA
TCTGATTTTTTTATGTACCCTGTACACTAGACCCTTGAAAAATGTGGATG
GGAGGTAGTTGAGGCCTGTGCTGGTATCTCCATGGTAGCAAAGCCGTCTG
CATACTTTGGTAAGACTATCCAACTCAAGAAAGACGCTGGTGTGTGGGAA
GCCCAAATAGATGACTCCAACATAAGGGAAGCTATGCTGAGGGCCACAGG
GCTATGCATAAATGGTGCTTCATGGACTGGAATTCCTGGATATTGTCGTT
TCACAATCGCCTTGGAGGAGAATGATTTTGGTCGTGCCTTGGATTGCATT
GTTAGCTTTGACAAACTTATCAGGAACTGA

Sequence Length:

8830

Sequence Checksum:

b8ccc43af3b28b25ade9de671f8e932e

View location in JBrowse:

DCARv2_Chr1:19919436..19928265-

Cds:

>DCAR_001729cds ATGGCGGCGATAAAGGGGTTGTACGGATCAGTAGACGAGTTTCTAGAGCA GTGTAAGCAGTCAGGTGACTCTGCATACACTGCTCTCAGATCACTTCTTG AGCGTCTCGAGGACCCGAATACCCGGACCGAAGCTCGGATCTTCTTCGCG GGTCTCCAGAAAAGATTCCAATCCAAGGAATCTATCGATGAATGTCTTGA CAATTATCATTTTCGAATCCAAGATATCTTCATTGAGCAACATCAAGAAG GTTACCAGAAGACTAAAAAGTTGACAATGATGGTAATTCCTAGCATCTTT ATGCCGGAGGACTGGTCCTTCACTTTCTATGAGGGACTAAATAGACACCC TTCATCTATGTTTAAAGACAAGACAGTTGCTGAGCTTGGTTGTGGAAATG GATGGATTTCCATTGCTATTGCTGATAAGTGGGCTCCTTCAAAGGTATAT GGTCTTGATATAAATCCAAGGGCAGTCAAGATTTCTTGGATAAATCTATA TTTGAATGCCCTAGATGAGAGTGGTCAGCCTATTTATGACGACGAGAAGA AAACTTTACTCGACAGAGTCGAGTTTTATGAGTCTGATCTTCTGGGGTAC TGCAGAGATAATCACATAGAACTAGAACGCATTGTTGGTTGTATACCACA GATTCTCAATCCGAATCCAGATGCAATGTCCAAGTTAATTACGGAAAATG CAAGTGAAGAATTTCTACATTCTTTGAGTAACTACTGTGCACTTCAGGGT TTTGTTGAGGATCAATTTGGCTTAGGTTTGATTGCCAGAGCAGTTGAGGA AGGAATTGCTGTAATCAAGCCTATGGGGATAATGATTTTCAACATGGGAG GCCGTCCAGGACAAGCTGTTTGTAAACGCTTGTTTGAAAGGCGAGGGGTC CGTGTTGACAAGCTTTGGCAGACGAAGATTCTTCAGGCAAATATATCGGC TTTGGTTGAGATTGAAAAAAACAGTCCACATCGTTTTGAGTTTTTCATGG GGCTGGTTGGCGATCAGCCTATATGTGCTCGAACAGCATGGGCTTATGGC AAGGCTGGTGGCAGAATTTCTCATGCTTTATCAGTATACAGCTGTCAGCT TCGTCAACCAAACCAGGTGAAGAAAATTTTTGAGTTTCTAAAAAATGGCT TCCAAGAGATAAGCAATTCTTTGGATCTATCCTTTGAAGATGATTCTGTT GCCGAGGAGAAGATTCCATTTCTTGCTTATCTTGCCAGTATACTGAAAGA AAAATCATTTTTCCCGTATGAACCACCAAGCGGAAGTAAACATTTTCGCA GTCTCATCGCTGGATTTTTGAAAGCATATCACCATGTCCCTCTTAGTGCA GAGTATTCTTCTTTACTTAGTAGCAAGGTTTTATTTGTCCAAAGAGGAAA AGCTGTGGCTATCGAGAATGCTCTTCGATTATTCTCACCAAGGCTTGCAA TAGTTGATGAACATCTGACCCGATATTTGCCTAGGCAGTGGTTAACATCA CTAACAATGGAGAAAAAGGAGACTGATAAGCCTTCTGTTGATGCAATCAC TGTCATTGATGCTCCACGCCAATCAGATTTGATGATAGAACTGATAAGGA AGTTAAAGCCCCAGGTGGTAGTTACTGGGATGGCTCAATATGAGTCTGTT ACTAGTTCTGCTTTTGAGCACCTCTTAGGCACTACTAGGGAAATTGGTGC TCGTCTTTTTATAGATATATCAGATCAATTTGAGTTATCCAGTCTCCCTG GTTCAAACGGTGTACTGAAGTACCTTGCCAAGACTGTACTTCCTCCCCAT GCTGCTATTATATGTGGCTTGCTGAAAAATCAGGTTTATTCAGATTTGGA AGTTGCTTTCGTGATATCAGAGGAGGAGAGCATCTTTAATGCACTATCCA AAACCATGGAATTGTTGCAAGGGAATACTGCACCAATTAGACAATACTAT TACGGTTGCTTATTTAATGAGCTTCTAGCCTTTCAACTCCCTGATCGACA TCCACCTGCGGAGAGGGATGTTGAGACAGTAAAAGCCAGTAATGTGATAG GTTTTTCAAGTTCTGCCATCTCAGTTCTTAATCAAGCAGAGTTGTCAATC AACGACATAGATCATTCTAACCCTATTCACATGGATGTGGAGCAAAGCTT TTTACCTATGCCTACTCCAGCCAAGGCTGCAGTCTTTGAAAGTTTTGCAA GGCAGAATGTATCAGAGGCTGAAACTGATGTGACACCTAGTATTAAACAA TTTATAAAGACTAGTTATGGTTTCGTTACTGATAGCAACTCGGAGATCTT GTACGCAGATTGCCCGTTAGCTCTTTTTACCAAGCTTGTTCTCTGCTGCA TAGAAGAAGGTGGAACTTTGTGTTTCCCATCAGGCTCCAACGGTGACAAT CTTTCTGCAGCTAAATTTCTGAATGCAAGTATTCTTACAATCCCTACCTC CTCTGATATGGGGTTTAAGCTCACAGAGAAGCAACTTACCAGTGTACTTG AGACTGTGAGTAAGCCGTGGCTGTATGTATCTGGTCCAACGATCAACCCA ACTGGCTTGCTCTACAGCAATGAAGAGATAGAAAGCATACTATCTGTCTG TGCTAAATTTGGAGCAAGGGTTATACTTGATACTTCATTTTCAGGTCCAG AATTCACCTCCAAACCCCATGGGAGCTGGAACCTGGGGACCAGTATAGCA AAGTTGAATTCTGCAAACTCATCTTTTTGTGTGTCTCTCCTTGGAGGGGT GTTTTTGAAGATGCTTACCGGAGGTCTTACTTTTGGGTTTTTGTTTCTAA ACCAGCCGTATTTGGTTGATGTATTTAATAGCTTGTCTGGCATAAGCAGG CCTCACAGCACTACAAGATACACGGCAAAGAAGTTGCTCTCTCTTAAAGA GCAGAAAGCAGGAGACTTAATTGGTGAAGTTACAGAACGTGAAACTATTT TGGGAAGTAGGTCAAAACGTTTAAAAGAGACCCTTGAAAAATGTGGATGG GAGGTAGTTGAGGCCTGTGCTGGTATCTCCATGGTAGCAAAGCCGTCTGC ATACTTTGGTAAGACTATCCAACTCAAGAAAGACGCTGGTGTGTGGGAAG CCCAAATAGATGACTCCAACATAAGGGAAGCTATGCTGAGGGCCACAGGG CTATGCATAAATGGTGCTTCATGGACTGGAATTCCTGGATATTGTCGTTT CACAATCGCCTTGGAGGAGAATGATTTTGGTCGTGCCTTGGATTGCATTG TTAGCTTTGACAAACTTATCAGGAACTGA

Pep:

>DCAR_001729pep MAAIKGLYGSVDEFLEQCKQSGDSAYTALRSLLERLEDPNTRTEARIFFA GLQKRFQSKESIDECLDNYHFRIQDIFIEQHQEGYQKTKKLTMMVIPSIF MPEDWSFTFYEGLNRHPSSMFKDKTVAELGCGNGWISIAIADKWAPSKVY GLDINPRAVKISWINLYLNALDESGQPIYDDEKKTLLDRVEFYESDLLGY CRDNHIELERIVGCIPQILNPNPDAMSKLITENASEEFLHSLSNYCALQG FVEDQFGLGLIARAVEEGIAVIKPMGIMIFNMGGRPGQAVCKRLFERRGV RVDKLWQTKILQANISALVEIEKNSPHRFEFFMGLVGDQPICARTAWAYG KAGGRISHALSVYSCQLRQPNQVKKIFEFLKNGFQEISNSLDLSFEDDSV AEEKIPFLAYLASILKEKSFFPYEPPSGSKHFRSLIAGFLKAYHHVPLSA EYSSLLSSKVLFVQRGKAVAIENALRLFSPRLAIVDEHLTRYLPRQWLTS LTMEKKETDKPSVDAITVIDAPRQSDLMIELIRKLKPQVVVTGMAQYESV TSSAFEHLLGTTREIGARLFIDISDQFELSSLPGSNGVLKYLAKTVLPPH AAIICGLLKNQVYSDLEVAFVISEEESIFNALSKTMELLQGNTAPIRQYY YGCLFNELLAFQLPDRHPPAERDVETVKASNVIGFSSSAISVLNQAELSI NDIDHSNPIHMDVEQSFLPMPTPAKAAVFESFARQNVSEAETDVTPSIKQ FIKTSYGFVTDSNSEILYADCPLALFTKLVLCCIEEGGTLCFPSGSNGDN LSAAKFLNASILTIPTSSDMGFKLTEKQLTSVLETVSKPWLYVSGPTINP TGLLYSNEEIESILSVCAKFGARVILDTSFSGPEFTSKPHGSWNLGTSIA KLNSANSSFCVSLLGGVFLKMLTGGLTFGFLFLNQPYLVDVFNSLSGISR PHSTTRYTAKKLLSLKEQKAGDLIGEVTERETILGSRSKRLKETLEKCGW EVVEACAGISMVAKPSAYFGKTIQLKKDAGVWEAQIDDSNIREAMLRATG LCINGASWTGIPGYCRFTIALEENDFGRALDCIVSFDKLIRN*