| NCBI Gene |  |
|---|
| Relationships |
|---|
| The mRNA, XM_017365792.1, is a part of gene, LOC108198011. |
| The genetic_marker, MK010955 8_14926185, is located in gene, LOC108198011. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017365792.1 | XM_017365792.1 | mRNA | DCARv2_Chr8:14918706..14926736 |
TGCAAAGAAGGAAAGAGGTGGTAATAAAGAAAGAGATTAGGGAGAGAGAT
TAGATACGTACGTATAAAGGGATGAAGGAGACATCGCACTGATGTCACTC
TTCTGGATTGTTCTTCGCCAGCTCGCTCAGATCGAAGCCATGGTAGATTC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCCCTCTCTCT
GTCTATATGCACACATGATTACTGTATTATCTTTGCTGATTTTCTCACTC
AGATTTGAACTTCTTGTATTTGAATGCACCAATTAGTATCGATAGACAAA
TTTATACTATTTGCGAGTATAATCTGCATTCTCTTAATGATTTTGCTCTT
CTTAATTAACTTCTGATTCTTCTTTTGCTTGTTGTGTTGATTGTTTTTAA
TTATGATTTGTGGTGATAATTACTGTGATAAAATGGTTGTGTAAGGAGGG
CTCCTAATTGCGCTTATACATTCATGGACAGTTAGTTCAATTTACAGAGT
TTGGTTTGAGATACGGATGTTGTTAGTTAGCTCTTCAATTTTGCGAAGCA
TATGAGTTTAGGAAAATTGTGTTAAAAGTTTTAATCTTTTGTGGTTGGGA
GTGTGCTTAAGTTTCCAGTAAATTGGATGGTTAGTCTATATGCACACATG
ATTACTGTATTATCTTTGCTGATTTTCTCACTCAGATTTGAACCTTTTGT
ATTTGAATGCACCAATTAGTATAGATATACAAATTTATACTATTTGCTAG
TATAATCTGCATTCTCTCAATGATTTTGCTCTTCTTAATTAACTTCTGGT
TCTTCTTTTGCTTGTTGTGTTGTGCTGTTTGTTTTTGTTGTGATTTGTGT
TGATGATTACTTTGATAGAATGGTTGTGTAAGGAGGGGTTCTAATTGCCC
TTAAACAAATATGGACTGTTAGTTCAATTTACAGATTTTAGTTTGAGATA
CGGATGTTGTTAGTTAGCTCTTCAATTTTGCGAAACATATTAGTTTAGGA
AAATTGTGTGAAAAGTTTTAATCTTTTGTGGTTGGGAGTGTGCTTAAGTT
TCCAGTAAATTGGATGGTTAGTCTAGTGTCCCTTTTTTTCAAGTTGAATT
TTTTATGTTATTAATTCTTTTTATCAAATACAATGAAGTTCTTGTTATCT
GAACAGGAACCAGGTCATGATCTTTCAAACTTGAAAAACTGGTCTGATTT
TAAAAACAAAATTTTGAATTCTGATTTGGCTCACCCTATTTGTACTCTCC
GCATAGATGATGCCATTTTTCTTTCTCTAGATTTAGAATTCACAAAGTTT
TTTTTTTTTGAGGTGTTTATTGCTTTTTAGCTCAAATATTGTTGTAACAG
ATGAATTAGAACATATTATGAATTTTGGGGAATTGTTCCTGAACTTTTTA
TCTTTTGTGATTGGGTACATAAAGCCCGCTAATGGGAAATTTGAATTTTA
AAGATGTTCTTTTTTTGCCAAAATTTTAGCCTAATTAGCCAAATAAAGTA
AAATTCTAGTTGTCTTAATTTTATTTGGATAATATTTTTTCCAGTCTGAA
CTGAAGCTAGAGTGGATAGGAACCAGATCATGATCTCTGTGATCTAGAAA
ATCTGGATATCAAATCCAATTCTGAAAACATTATTGAGTAGCTGATTATG
CCGACCCCTATTCTATCAATAGAATGTATGTGCAAATTAGAACTCTATCT
GATCATGTAGTCGTTGCACTAATGCTCATATGCTTTAGTTTTTATGTGGG
TATATAATTGTCCATGTATGCCGTGTAAGCTATTTTCTTCACATTCATGT
GCAAAGATGACATCCTTTATTGTACTGATGTAACACTGTTTTTTTTCTAA
TATGCAGGCTACTTCCAAGAAGCTGATAACTAGAGAGGAATGGGAAAAAA
AGCTTAGTGATGTAAAGATTAAGAAAGAAGATATGAATAAGTTGGTTATG
AACTTTCTTGTCACCGAAGGCTTCGTTGATGTCGCAGAAAAATTTAGAAT
GGAATCTGGAACTGAACGTATCCTTTGGCTTTAAAAATTACAGTATTTTG
ACACTAGTTTTTTTAATTTAACATTGTGCGCTTTAGCATTTGCTTTTCCT
TATAGACATATATAGCAGATATAGATCTTGCAACTATCTCAGACCGCATG
GCAGTTAAGAAAGCAGTACAATCAGGGAATGTCGAGGATGCAATAGACAA
AGTCAATGATTTAAATCCAGAGGTTTTAATAGAAATCTTAGTGTATGATT
AAATTTATGACTTGCACAGAGGAAAGGCATCAGGGGTTGTGATAAATTCT
GATTCACATATCTTGTGTAGAAATATTCATAATACTGTTGCGTATAGGCC
TAATCATGGAATCCAGAGCCAGTACTCGTATTGTACAAGATATTGAGTAA
AGTAATACCTACTAAGGTTTAACCAGTTATAAGGTCAACCCTGTGGTAAG
CTGTATTTAACAGAACAGGGGTAAAGTCAGGATATGAACTATTTGTCACT
AAGAGAACTAGGTTAGGGTAAGATTGCAGCCCTTAGAGAAAATTAAGATT
GGAAAACCAGGCCTGTGTACTCATTGATATTTTTTGAAAAACACTACAAT
GTTGTACATGATGAATATTACTGATAAAGCTATTATGCATGTTCTTTATT
GAGACTTTTGGCTGGCTCTGAATTAGAGATATGTTTGTTGTTGCAAGACT
TCAATTCGCTCTTATTGTTGATGTTAGTGAAGACTGAATAGCACAGATGA
GTCTAGCAAGGGAATGAATTAGCACTTAACTGAAAGTTTGGCCCAACCGT
ATTAACAGGCCTAACTTTAACATTCAACCCGATTTCTTATGATTCTTTTT
TGAAACATCATCGGAACAAGGATGTGAATTTGGAAAGATAGCAATTCCTC
AGGTATCAAAATCTAAGTTGGGAACTTTTGAAGAGAAGGCCTGTTAGGGT
CTTCAAGAATTTGCCTATATGCAGAGATTGCTACATTACATGCAGCTAGA
AGGATAATAAGAGGTTTAAAGTGACCAGTGCTTGCTTGGTTTTGGAACAT
ACTCATCTTAGCTTTTGTATAGTTCTGGCTAGAGGAGAAAAATTCTACAA
GGATATACGTGTTTTCCAAATTTATATCCTTGAGGGCCACATGTTTGAAG
AAGGGCACTGGCCACGAATAGGGTAGAGTTGTGCAGTTTGACCAGACTTG
GGAGACCTCAGTGCTGATTCCTTCCAGTAGAACTTATTGTCGGTATTACC
CTTCACTAACATAAACAGCAAATTGAAGTCTTATAAGCATAAGCTTATCT
GTAATTTAGAGACACCACTCATTTAACACACGACATGCATTATAGCTTTA
TCAGTATGCATAACTTCATTCCTTTGTTATGTTCCAACTAATATAAACTA
GAGCCCAATCCCACTAATTTGAGAATGAATGCCCTCATCATTATCCGTTT
TCTTCACAATGTCCGTTATAGAATATTTGCACTTTTAAGTTTCTCTTTAC
ACTCTTCCCTCGCATCCTTTTCTCCCTGTTAAGTTGTTCACGATTATTTC
ATGTCATCCCCTTCCAACCAACGGAGCATAAGTATATTTTGCTCTGTTGT
GCTATGGTCAGAGCTTTCCCAAAGTCAATGTGTTTTTGGAACATACTCAT
CTTAGCTTTTGTATGGTATTGGATAGAGGAGATAATTGCTACAAGATATA
TCTGTTTTCCTAATTTATATCCTTGATGGCCACAATGTTTTGAAGAATGG
CACTTGTCAAGATTTGGGATGGAGCTGTGCAGTTGGGCCAGATTTGTGAG
TATTTAGTACTTTTTCCTTCCCACAGAAAAACTTTTTGTTGGTATTATTC
ACTAACATTTGCCAATGATTAAAGTCTTCCAACCATAAACTTATCTGTAA
TTTAGAGACATCACTCATTCAACCCAAGATTTGGGATGGAGCTGTGCAGT
TGGGCCAGATTTGTGAGTATTTAGTACTTTTTCCTTCCCACAGAAAAACT
TTTTGTTGGTATTATTCACTACCATATACAGCTGATTAAAGTCTTCCAAC
CATAAACTTATCTGTAATTTAGAGACATCACTCATTCAACCCACGACATG
TATTATAGCTTTATTAATATACATTATATTGCGAGTATAGTATAAATATT
CTTTCATTCCTTCTGTTTTTGCTAATATAAACTTGAGCCCAAACCCAATA
ATATGAGAATGAATGCTTCATTTGCTTCCTACTCTTTTTCTTCACAATGT
CCATATTATAAAATATTTGCACTTCATTATTTCTCCTCACACTCTTCCCT
CTCGCATACTTTTCTCCCTGTAATTTTGTTCACAATTATTGATTTCATTA
CTTTCAATGAACCGTAAGTATATCTTGCTCTCTTGTGCCATGGGCAGGGC
TTTCCCAAAGTTAATGTGTCTTTTCTTAGATCAATATAATCTGGATAATG
TCTTCTTTCTTCTCTCTTGTTGTGATTTCTTTTTGAAGGAATACATCTAT
AATTCTATATTAACTTCCATCGAATCTAATTAGGCCACTTCTTAGAAGCA
TTATACATGGAAATATACATGTTGCTCATTTATTGTAGATAGATATTTGC
AGCTTTGTATGATAAACTTCTCTGGCAATTTGTATGCAGATATTGGATAC
AAACCCCCAACTCTTTTTCCACCTCCAGCAGCAAAGGTTAATAGAATTAA
TTAGGAATGGAAAAGTAGAAGAGGCCCTGGAATTTGCTCAGGAAGAGCTT
GCTCCTCGAGGAGAAGAAAATGTAAGTTGGTTGCTTGTTTATTATATGAT
CTAGTGGACTTAAATTACACAATTATCTTCACAGTGTGTTAAGCTTAGCT
AATATTGTTTGAAAAGCGTTTAACCAAGTAGAATTTCAATGCTGCTGTTT
TAGACCTTCAGTATCTAACTCAACATCTCTGACTGCCTGTTGTCATGACA
TCTGTAGATAGCCTTTTTAGAAGAGTTAGAAAGAACTGTTGCACTGCTGG
CTTTTGAGGATGTAACCAATTGCCCTGTTGGAGATCTTTTAGACATATCA
CAACGTCTAAAGACAGCAAGTGAGGTGAATGCAGCCATTCTTACCAGTCA
GAGTCATGAAAAAGGTAGGAGCTATTTCTTATAACTATGGTCATCCTTTC
ATTTGCCACGAATCAATTTCGGAAATTTTAGTATATGCTGATGATTCAAA
TTTTCCAGTGGTTGAGAGGAGTCACTGCATGGTAAATAGTTACATTAGCA
GATTCTATTGGGATAAATAGATAATACTGCTCATGTGAAAATCTAAAATA
TGACCCTAAAATCACAGACCTGTCAAACAAATTTAGGATTGTTCAAGCTC
ATTGAACTTTCTAAAAAGACCATTTTAATTTATATCTTTTATGTAATTGA
TATACCATTGTATTATTCATGGTTATTACAACACCAAGCTGGGACTCGAG
ACTCGACGCCTGAGTACCTTCAAGAAGACTAGGTGACAAGTAGTCGGACT
AATCAAAAAAAGTCGACAAGTCTTTTATAATATATGTGTTTACTAGGTTT
AATACAAAAACAAGTTAGCACATCAATTTATAATTTAATCAAAGTAATGG
AATAATAAGTTCCTAGAAAGCGGGGATTCTTCACTCATCAGTTGCACCAC
ACACTCGATTCTTGGGGGCACGGTGATTTTTCTTAATAATAGTTAAGCAA
TAAGATGATTACTTAATGACTTAACTACCTTATGCAACAATTGTGTTATT
AAGTATTATTATATCAATAACGGGTTAATTATCAAACTCATCACTGAAGT
GGACAAATGATATCAATTTCATCACTGATCTCCACGGGGTCTCAAGTTGC
TCACTAAACTCGTTTAATGGTATCAAACTCATCATTGCCGTTAAAAAAAA
GTAACGGAGGTTAGACGGAGTAACAGATTGGCAATTGACGTGGCACATTA
ATAAAAAAGACCGAAGAAAAACAATTGAAAGAAAATAAAAAAAAAAGTAG
AAAATAGAAATGCCACATAATTTGAAGTTTATATGGAAATAAAGTATGCA
AACTTTTTATTAAATTGATTTTAGGATATAATTATCTAAATAAACGTATC
GAACTAAATTTTAATATATAATTAACTAAACAATTAAGATTAACTTTTAT
GTTTTTTATTAGATTATAATTATATTTGAATAACATTGAAGTGTTTTCTC
TTTTAATAAGTTTTATTTATGTGAATATTATTGTTGGCAAAAAAATATTT
TCAAATTTTTTTTATACCACCAACTTTTTTAAAATTTTAAAAAAAATCTT
GAGATTGAACATAAAGAAATTCATTTCGATTTTTAACACTTCTATTTCTT
TTGGAGTTTCTCGTACCCAACAAAAACATGAAAATAAATATATGTAAATT
TAACATATGAAGCAACACACATTGTCCAAATCTTCAAAAACAACACATAA
TGTTTAAAAATATTTTTTTGCCAACAATAATATTCACATAAATAAAATTT
ATTAAAAGAGAAAACATTTCAATATTTTTCAAAAAAAATTATAATCTAAT
AAAAAACATAAAAGTTAATCTTAATTGTTTAGTTAATTATATATTAAAAT
TTAGTTTCATACATTTATTTAGATAATTATATACTAAAATCAATTTAATA
AAAAGTTTGCATACTTTATTTCCATATAAACTTCAAATTATGTGGCATTT
CTATTTTCTATTTTTTTTATTTTCTTTCAATTGTTTTTCTTCCGTCTTTT
TTATTAATGTGCCACGTCAACTGTTACTCCGTCTAACCTCCGTTACTTTT
TTTAACGGAGTGATGAGTTTGATACCATTAAGCGAGTTTAGTGAGCAACT
TGAGGCCCCGTGGAGATGAATGATGAAGTTGATACCATTTGTTCACTTCA
GTGATGTGTTTGATAATGAACCCTATCAATAACTAAGAATAATGAGTTTA
TTTATATGACTTTAGTTTAAATACAAATGTAAGTATTGAAATATATAAAA
TATATTTTTAATGTTCTAATATTTGCTGAATCCCCATCCCCCTCACCTGA
ATCACCATACTTTTATATTTGCCAAATTTTTCGTATATCTGTATTGCACA
CCCTTGCACCCGCACTCATGCTTTAATAAGTTGAGATTAAGCAGAATTAC
TACAAAATTGCTCACATTCCTAATATCAACCATGTCCAACCAAATAATAA
CATTAGTGATCATGAAAAAGAAGCAAATATCATATCATGTTCATCTCCAT
CTCCTTTATTGCCAATGATTGATCGGGCGATAATACATCATAATCATGGT
TATCCTAGTGCCAAGTCGAGCTTCGAGGAACTGGTCGCCCGATTACATTC
GGGTCGACTAGTCGTCTTACTGATAACCATGGCCATACTAAACATTTCTG
AGTCTGGTCTTTATGGCATTCTGTTATTGAAGTTTTTCCCCATGCTCATC
ATATATGCAGCCTAACTTCTTGTATTGCTACCAAGTTCTGATAACTAATG
TACAACAGATCCAAAACTCCCAAGCTTGTTAAAGATGCTTGTGTGGGCTC
AAAATCAGCTTGATGAGAAGGCTGCTTACCCCCGAATTACTAACTTATCT
ACTGCAAATCTTGAAGACCCTGCTGTTTAGTATGTACCAAGGCTGTATGT
AAGATCCACTTATTCAGGACTACACAGTTTCAGAGTGGATAAATGACATG
AAATCATGTAAATTCTGCTTTGAAAGACCGGAACACATACTTCACAAATG
CTGTAGAAATGGAGTAGCCTTGAGATCCCAGCCAATTGTTAAATGTGGTA
GAAATTGTTTGGCAAAGCATAGTTGATGTTTTCTTTGTTTTAAAAATCTT
CTCCAGCTTATCAGATGTTAAATTGTAGGTTTCTTTGTCTATGTGAAAAT
AGTAGAGTCTACAGTACAGTAAAGTGTTGCAAGTCTGAGACTTGATTTAC
TAATTTGTGTCACAATTTGCTATTACTCGATGATTTCTCATAATTTGCTA
TTAATCGATAATTTCATGTGCCGAAGTGAA