| NCBI Gene |  |
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| Relationships |
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| The mRNA, XM_017364677.1, is a part of gene, LOC108197155. |
| The genetic_marker, MK005066 K2510, is located in gene, LOC108197155. |
| The mRNA, XM_017364676.1, is a part of gene, LOC108197155. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017364677.1 | XM_017364677.1 | mRNA | DCARv2_Chr8:29172301..29180401 |
| XM_017364676.1 | XM_017364676.1 | mRNA | DCARv2_Chr8:29172302..29180401 |
AGCATACAAGAACATATAGACAAAGTACATGTAGACACAACAAGTTCGTT
ACATTAGTTTCCTGCTTCCTCGTCAAGCATTAAACACACACTACAGAGAG
AGATAGAGAGAGAGAGGGAGAGAGATTACTAGGGAGAGAGAGATTAATAA
ACAGTTCTACCTGAATTCACGTCTATCCATCGAAGCACACACAGGTGAGT
AGTGAAATCACACACACACACACACACAAAATAAATTCAAACTTCCTGTT
TATTTAGGTTGTTAATATATGCTTTTATTTAATTATACTATTTGTCTAGG
TTTTCAATTGGGATTTAATTATACTATTTGTCATCTTCTGATTATACAAG
TGATCCAATAATCATATGTATCAATTTCTTGTTGTATTAGATTTTGAAAA
GTTATTGGGATTTCATTCTGTAGATTTGGTGATTATATAGGTGGAGTTAA
AGATTTGTGTATATATTGAGAGGGTCTAAGAGATATATAGCTTGAGGGGA
AGAAGGGATTCGAAGAGGGAGGTACTGGGATGGGGAGCACGAAAACTGTG
GGCTCGACGACACAGGTGCATCGTCGTGATCCTTATGAGGTGCTGAATGT
GTCGAAGGATGCCTCGGAGCAGGATATTAAGACTGCGTATAGGAAGCTTG
CGCTAAAGTAATCTCTCTAAACCATTAACTTGTTTGATGTTTTTGTATTG
GAATTTGCGGATGTTTGGGCGTTAATTGTTTTTCGTGGTGTACGGGAACT
TTGGGATCATTCGTCGATAGAGATTGTTGCTTTATTGCTTATGCACACAC
GGTGAATCTATTTAAACTTACCTGGTCATTGCCTTGTCTATAAATTAATA
TATGTTCTCGAAGTTAGATAGATGTGTACCGTGTTTGAAAAAATTCCTGA
TGAAATATCTTTGAGGACTGTAGTTATAGCTTGTTAGTAATTGTCCAAGA
AAGCAAGAAAAATTGTCCGTTCTTGATTTCTAATTATGTCATCAACTGCT
ACATACTTGGAGGTAATGGTTTTACATGTGTACAGGTATCATCCTGACAA
GAACGTCGATAATCCTGAAGCTGCAGGACTTTTTCAGGAGGTTGCCTATT
CTTACAGTATTTTATCTGATGCAGAGAAAAGAAGGCAATACGATAATGCT
GGATTCCAGGTAGTTTTCTACAAAATAAACACGCATCACTTCGTTTGTAT
ATTCTGAAAATCTCTAGGGAATTCGTTGCTTTAATATCGTATATCCGCTT
TGCTATCATTAATATTTTCATGTGGGATTGATTTAAAACCATTCTGACAG
GCTCAGGAAAGGAGAACCTGTAGAGCTGTTTTTTTTGGACAACTGTAGGC
AATAGCCCAAATCCTGGACCAAGAGTGAAAATGCTTATTGTAGGTTTTAG
ACAATGCATATTCTAGGTTTTAGACAGACACATCATTTTGAGAGAGGTTT
GATTTAAAAAATTACTAAAAGATGTGCTTTTCACATGGTTGTGTAAAGTC
TGTGGCCTATAAGATGAATTAAGAATGAAAGTAAGAACTTATCTAGTGTC
TCTACAAGATATTGTAATTTTATGGCCAAATGTAGATATTCAATCCTTCA
AAGTAATTACAAATATACAGAGTAGTATATTTAGGTTATTTTAAGTCAAA
TCATGTATAGGAGCCCTATTATTATATGTAAGATGCAATATGCAGAAATT
GGTTTTAAAAATAAAAACAAACAATGACAGTATGCAATGGTTTTTGATAC
TTGATAATGTTGTACACGCCTGTGAACTTTTATTTTAGCACTGCGTTCTC
GAGTTTTTCTGATGAAGAAAAGAATAGTATTGAAGTTAAGAGAAAAGAAA
GAAAAACAAAATGTTTCTGATTATCTTTCTTATATTCTTTAAATTTTTAT
TTGAGAAGAAAGTGAAGATATGTAAAATGATTAATACATTTATTGCTATA
ACTGGTCTTTATTTCTCAATCTTCTCATATTAAGAAGAAACTTTTAGAGT
GTAATTAGCCTATATTTCACCTTCCTTTCTTTTCCTTTCTATTATTTAAA
TATATGTGGAACATGCGAAAGAAAATAAATAATCATATTTTTTTCCCTTT
CTCCCCAAACTAAACTCTGGAGTCTGGAACACAATGTAGAAGTTTTACAG
GGGAAATTGTTGCGTATGTAAAATAGGCAAATCAGAGAGATGTTTTATCG
GATTTGTGACTAAAGTAAAGGTGGAAATATTTAGGGGCTGGGGTTGATAG
ATGGTGGAAGTTAATGATAGCTTTAGGATAATCAAGAACACCGGTAGTGG
CTTTATGTGTCCACACACATCGACATGTCAAATATACAGGAATCTCCTAT
CCCTATCATGAAGTTGTGTGTAGTGCCACAACACACAAAGATATGTCAAA
TAAATAGGAACTCCTGGCCCTACCATGAAGTTATGTGAAGTGCTCATTCA
ATGTACTTCCTTAGAGCTGCAGCATGCTTCAGAAACACATACAAATATAT
GTCAAATAAATTCCTCCCTCCATGAAGTCATGTGTAGTGCTCATTTAATA
TACTTCCTTGTGGCTGCAGTGTGCTTTATGAAAGTGAGATTGTTTTAATG
GGATAAAGAGTTGACATGTAATAATAGGAGCGGCGTTTTCTTTTAAAATG
TTACCAACTATTTTGCAGTTGTTTGTGGTAAAAAATCTGGTCTTGTCATA
TATAGCTGGAAAATAATTAATGAAACGACAAATTTAGGTTCATCCTTCTG
AGTCATCAACTTTAGGATTTAAAAAGCCACCTACAGACGCTTTACGCCCA
ATAATTCTAGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCAC
AGAGTTAGCCGATGCTTATTTCAGAAAGTTGTCCTTATCATACATTTGAT
AGTAGATTAGCATTTGTTTAGAATTAGGAATTGGTCTTCCTATAATGCAA
TACATCAGTGAATAATTTTTTTTGTCACAAATTGATATTTCTTCATGTAA
AGATGACTTTGATATCTGTCGAGAGGATATTAGTTTTCCTGTTCTTTTGT
CAGTGTGTTAATTAAGTTATATATTGTAGTTTGACCGTTGTTGAATCCTA
TCAAACCAAAATTGCAATTTCTTACTCTATTAATTTCAAATGGTTTTCAA
TAGGCTATTGATGCTGAAGGCCTGGAGATGGAAGTTGATCTATCTAATCT
TGGAACTGTAAATACTATGTTTGCAGCATTATTCAGGTAACTTCTTTCAG
AATGTGTTAGCATTAGCTTAGAAGGGAGTATATTACTCAGTCTCTTTATT
TATTCTTAGCAAGCTGGGTGTTCCTATTAAAACCACCATTTCTGCTAATG
TTCTCGAGGAAGCATTGAATGGAACTGTTACAGTCAGACCTCTTCCGGTT
GGAACATCAGTTAGTGGAAAGGTACATGTTTGCATGATTTAGATTACTCT
TCAGATATTCCCTTGATGTTAACTTTTGAAGTTGTGAGGCAGGTAGAAAA
GCAATGTGCCCACTTTTTTGGTGTGACAATTAATGGGGAACAAGCTGCGG
CAGGGATTGTTGTCAGAGTTACTTCTGCTGCACAAAGCAAATTCAAGGTA
TAATGACATGTCACATGTGCATATAAAGTTTTATGATTTAGAATGGTTAG
TTTAGCTTCTTTTTTTTTCCTGCCCCATTACAATCTGAAGAAAATAATAA
AATCTTGCAGAGTGGCATGTTAATAGATATATATGGATGTGATTTTGCAG
CTTCTTTATTTTGAGCAAGAAGTCAGTGGAGGTTACGGATTGGCATTACA
GGTGATATATCTAATTTTGTCGACTATTTTTATAATTTTTGGTGTCCTTG
GGTAGTTGAAATCTACTCTTTATATTAATAATTGTTGCATTTTGCTAAGA
TTTTGAGCATTATAAATTACGTTAAGGGTTGTTAATGTACAATAGTCTGT
GTGCAATTGTATTCTTGTGCAGCATTTAGCTGGGTGACTGGTTCGTTACT
TTTCTGAATTGTACATTTTCTGTTTGCCTTAAGAAACTAAAACCATTCAT
GGAAATTACATCAGACAGCTCTATCTCCTGTGAGTCTGTGACTGTGCATC
TAATCAAAAGGAGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACGTTGGGGGGGGGGGG
GGGGGGGGGTCAGTGTTGTTACTTGTTAGAGGGGCAGAGATTCATGCCCA
GGAGTAAGGCTTGGATAGGGGCACATCTGTTAGAGGGGCAGAGATTCATG
CCCAGGAGTAAGGCTTGGATAGGGGCACATCTCTGCCTAGAAATATCTAT
GAACTTGTCCCTACTTCTAATCCCCTAATGAAAAAATTTCCCGAATTCCA
GCCATGTTCAAAGCAGGGTTCAGATCAGGCAGGATGGGGGTTGAAGCCCC
ATCCCTACCTAAAATTGGTGGGATATGTTTAAAAAATCTATGCAGTCAAT
TAATATCCATGCCGACAGCAAATATGTCTGCAAACTAGTTGAAGTAGAAC
CTAGCAGAGATGTATAAGAACGAATATTTGGATGCAATAACCGTTTAAGC
CAGAGATTGTACTAATTATTGAGTTACTGCTATGATTCAATTACAAAACT
TTATGCAACTACTACAGATTAGGTAGAATTTAATAAATTTAGTATGATGG
AGTTGTTATAGTACAACAAGATGAGAAAGCTTAGTTTTTACAGAACATAT
TAACATAATTACTGATGAAAAATATATGCCAGTTAGCTCTACATATGTGG
AAAATAGCACAATTCAGGGGCTCAGATCACTTTGGCTTTAGAGAATATTA
ATGTTTAAAAAGCAGATAATCTTTCTTCAGAAGTTGGTTTTTGTTATTTT
ACATGATGACACAGAACTTGATTCAGAAGACTTAGAATTTGATGTTACAG
GATTCAGTGTGACTGGGGAGTGAAACTTGAAATGTGTTCAGTGTCAATGT
TAAACTATATGTTTATTAATTTTGGTAACATATGTTCTTGGCTTCACCAA
TTTGCAGACATAATCATGCAAATGTTTCTTTACTATTGTTCTGGGCACGT
GTTGGAGAACTGATGATAATATATAGTAAAATTAATACTGAGCTGCATGT
ATATTGTTAACGTTATATGATTGTATATTTTAATAAGACTAAAATATGAT
AATTATGTACTCCATTGATGTAGTAAATCACTGAATTACGAATATTTGTT
GGGTGAGTTATGAGTAACTAATATTCTTAGGGGCGGGGCAAAACATTTGG
GGTCCCTGTGCGAAATATCAACATTGGTCTCTTAGATTTTACTTTCATAT
AATTTGTTTTTAAATAAAATGAACTATCAAAACACATTATAAATTAGAAG
CATACTCATAAAAAATCACTTGAAAAGATAGGCTCTTCTTGCATATTTGT
AACAAAATCATCAACAACACTTTCAATATGTATAACCAACTTTTTTTGGT
TAATTTCCAATATTTATATATACATAAAATTTAAAATTTGGGGGGCCTTT
ATTTTCGAGGGCCCAGCTCACCCCGTGCTCCCTCAGCACCGCCCCTGCTG
ATAATATATCTTGGTAGCTTTCAAACTGATGATTAGGGGAGTCACATTCA
ATTTGTTCTTTTTCCTTGGCATGTACTCGGTTCATCAACATTATTTGCTA
ATTATATGTCCATCCACGCAGGAAGATAGTGATAAGGCTGGCAAAGTGAC
TTCTGCTGGGATGTATTTCTTACATTTTCAAGTGTACAGGATGGATTCAA
CTGTCAATGCGGTATATAATTACACTGACATTTCGTAATATTCTCCCAAG
GTGATCTTCATCTAACAGCTTAGCATCTTACGATTTTATATATGCTGGTG
CAGTTGGCAATGGCCAAGGATCCTGAAGCTGCTTTTTTTAAAAGGTTGGA
AGGCCTGCAACCTTGTGAGGTCTCTGAACTAAAAGCTGGCACCCACGTGT
TTGCAGTTTACGGTCTGAAAACTTCATCCTTTTATGTTTTAAGCATCCAA
TGGGCTCACCTACAAGAATTTAATATTTCCTCAGACCATATATGCTAAAT
GTACCATGATTAATGCAGGAGATAATTTCTTTAAAACTGCTTCCTACACA
ATCGAAGCTCTGTGTACAAAGTCATATGAGGATACAACAAATAAGCTCAA
AGATATTGAAGCTCAGATCTTAAGTAAGAGAAATGAGCTGCGCCAATTTG
AGACGGAATACAGAAAGGTAACGGCCTTTGCTTGGCCTTACTGATTGTAT
ATTTTTTTACAATATAAGCTTGTTAATGGATTCATAATTTAACATTTTGT
AGGCATTGGCACGGTATCAGGAAGTGACTAAGAGATATAGCCAGGAGAAG
CAAACTGTAAGTTGTCTCCACCCATAGGCAGTGCACTCCTTATTTTTTTG
CCTTATTCCCAGGAGATATAGCCAGGAGACCATAATGCAGTAGCATGATT
ACTATAGAATAGCTCAAATTATTACGAGAGTACCCTTTAAATGATACAAA
CACGGACTTCACATCCTTGCCCTTGGAGGAAATGGATCTTCTTTACATTT
TACCCTGTTGAGGGATGTTGATGCTCCTGACCATTATAAACCCCAATTTC
GTTCCGCCATATATGTACAGTCTTCATATTTTAAAGAATCTTACCCGACT
TCCACTTTTCTTGCGCTCTGTGAACAGTTATTGCCTGTCTGTTTGCCTAA
CAGCTATGCTTTGCTGATATTGGGTTAAATTTTCTTTCTGCTAATAAGCT
GTCTGGCGGACTTAAATTCATGCATAGCCTAGGCCACCCCGGCTTTCTCA
AAATGAGCTTTTAGTTAGACCAAGTGCTTTACACCCCAGTAAAAACCCAA
ACCAGGACTTAAATGAGAAAATTGTACATATGTTTTGCATAGAGTTAATT
AAATGAAAAATGTATATTACAATCTTGGTAGTAATTTTCTTTTTCAGGAC
TTAAGTGGTAGTCTATATTATACACGTGTTACTATATTATACGAATAAAT
ACTATTATATATACCAGTAGCATATCAATCAATATTCATCAAGTGACAGA
ATTTTCATTTATGGTTATCAAGAATGAAGTAATCAGTCACATAATGTAAG
CATAAAAACATAATGACAATAATTCCTTACATATGTGATTAGCTGTTTGA
GATTTTAGTTTTGGAGAGTATTGTCCAACACTAATAAGTCAGTAACCACT
ACTCTGTGACGCAAAATATTAGGGGCCAGTAATCAAAAGCAAGTCAATGA
CTTGAGACATACATGTGTCTAGACCCTAAAATAGCACCATGTTTGGGTGT
ACTTGGCCTCACTGTACTTGCAAATATATATACATTATGCATATCTATTA
TGTGTATGTGAATATATGTAAATTAAATTTTACTTAAATTCTTTGAAATT
AACTGAAGTGACAAAATCTGTGGCTCCCCCTGGTTATGCTAGACAGTAAT
AGCCACATTTAACGACTGATTGTTGTATTTGCAATATTAGGTTGAAGAGC
TACTGAAACAACGAGACGGCATACATTCTACATTCACCATAAGTAAGCCG
CCCAGTCAAACTAGTGCAGATACAGCCAGTGTTAGCAACGGAAGTAGTAG
CAAAATACCTGCTGAAAATTGTAAAGGGGAGAGCCCCAGGGAAGATGGTA
GCTCTGATGGGAAAGATAAGTCTAGCAAGAAGAGATGGTTAAACTTCAAC
CTAAAAGGTTCCGCAGATAAAAAAAGTGGTTGAAAAGAAATTGGTTGCGG
ATAGTCTTGTATTCCTGGAGGACTGGAACTCTCCATTCTTTGGCTTGATG
CGATATATTTGCTGCCAGAGCGCTCGGATTCTGTTCCTTGTCATCCATTC
CCCGCCTTTGGGATTTTTTGCTCAGGCTTGTCATCAATCGTTGTTATTAT
CAATTCATGTGAAGTATGGGAAAATTGAAATATACAGATTTCCCCCTTTT
TCTGTTTTTAATTATTTTTATTGAATGAATATTTATCCTCCTTGCGGGAA
TTTACATGGTAAATAAAAATTGATATGGTCAAAATGGAGAAGTTATATAA