Resource Type:
Gene
Organism:
Name:
DCAR_001932
Identifier:
DCAR_001932.gene
Locus Tag:
DCAR_001932
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_001932, is a part of gene, DCAR_001932. |
| The genetic_marker, MK006249 K3693, is located in gene, DCAR_001932. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_001932 | DCAR_001932.mRNA | mRNA | DCARv2_Chr1:22460412..22475159 |
Sequence:
ATGGGTGGCGATAATCCAGCAGAAAAAGCCCTGATTCTCCACCGAGCCAG
ACTTAGTGACCCCAATTTCATCTTCGCTCACTTCTCACACTCACCAGACA
CCAATTACAGGTGCCTCTTTTTCACTGTCATTTCATTTCTTTACGTTAAA
GTTTGAATCTTTATTGATTTTATTTGACGGGTCTTGTGTTTTTTAGCAAG
TTGAAGTTTATTATAGCAAGTTCTGTAACTGAGGCTTGTAACAATTCTGT
TCTGCTTCTTGGTCCTCGTGGTTGCGGCAAGCTTGCTGTGAGTAACTCTG
TTTAATTTCATTCTATTGATGTTTATTCGTGGTTGTGTGATGTTTTGTTA
TTGTTTGGGAAATGGGTTTAGGTGTTGGAGCTTGTTCTCGATGATTTGCT
CAAAGAGTATCCCGATATGATTACAACGGTATGTGTACTACCCTTTTGGC
AATTTGTTGTGCCCCGTGATAAAAGATTGGGAAAGTGGGTAATGTATGGA
ATTATAGTTATAATTGGGAAATTGTTTAGAGAAGCAATGATGAGTTGTGC
ATTAGACTGGCTTGATATGGGGTTGTTCCGTAAAATCGTTTTTTGCTTTA
GTACAAGCATGTGTGTTACTCTTATAGGGGAATCATTTGTTGATATATAG
AAACAATTGTGTGGAAATTTCGATTAGCTCGAACTTCTAGTGTTTGGTAC
GTATGTGATTTGTTTTTGTGACTAGATTCTTTTGTTTTCAGATAAAACTG
AATGGTCTTTTGCATAGTGATGACAAATGTGCGCTTAAGGTTTGACTTCC
TAGTCCTTACTCTGGTTTCCTAATACCTCTCATTGGCCGTTCGGGTCAAT
TCTTTCAGTTTAGAATTTGATTTCTGTTGCTAGGTTTGTATTAATTAGTA
AACTATTTTTCTGATAATTAAGTGAAAGATCTTTAGTTCTGCTAAGTAAT
AACAGAAAGAACACAGATAGTTTACAGTACATAATTGTATTAGGACTTTT
TTTTTTTGTACCTTTTATCTCAGAAACAACACTGTTGAGTTTGCAGGAAA
TTGCTAGACAACTGTGTGCAGAGCATCAGTTATCATTCTCCAAGTTGGTA
AGATGCATGCTCTCAAATTGATCACGCGGAACTATATTTGAATGCTATTG
GACAAAGGTGTTTAATAAATCGGGATTACCTTTCAGGCATCATTTGATGA
TAATAACCAATTCATGATAGACATATTGCGGTGAGTATAGTGTTTGGCAA
ACAGATTTTTTGATCATCACAACTGCAGTGGTTCACCAAATTCATTATAT
TGTAATTGTTTTATATTCGTTTTGTTGTATGGTTTCCAGGGAGTGTGGAT
TAGCACATAAAACAGTCATTTTTGTATTGGATGAGTTCGACCTCTTTGCG
CAGGTAACATGGTACTTTTTTTTACGTCACAACACCTAATTGGTATGCAT
TTGTATGTACATTTTTGTTTCATTGAATAGACATAGATGATCAGATATTT
CAGAAGTAGAAATTAGTATAGATAGGCTTTTTTTGTACTATGTGTTAATT
TTTTTTTCAGACAATTATTTTGCTTCTTGTCAACATTAAACATTTCAGGG
AAAACAACGATTACTATATAGCTTGCTAGATGCAATGCAGTCTGTGTCGT
CACAAGCCGTGGTCGTTGGCATTAGTTGTCGCTTGGTAAGTTGATCAAAC
TTTAATTTGAATTGGGGATGCACTTTCATTCTGTTACTCGGGATTATCTT
ACAACACCTACCCATGTATTCGGTAATTAAAGAACTTAACACATAATTAT
AAATAATGCTGCATCTTTTGGCTGAAAAGTTTGTTGTGTGTGCTCAAGTG
TTGCAATAATTGTGGATAGATTTCTATAGAATCCTAATATACATAAATGA
AATACAGGATGCTGATCAACTTCTGGAGAAAAGAGTACGGTCGCGGTTTT
CACACAGAAAATTGTTGTTCCTCCCTCCCTCAAAAGAAGATCTACAAGGG
TAATTTCCCACTTTCAGACTAAGCAGAACAACTTTATCTCTCAGGATTAA
ACATGCATGAGTACAATAATCTTCTCTTTTTTTTTTTGTCCACGCAGGTT
GATAAAGCACATGTTGCTATTGCCTACAGATTCAAACATTCCTGAAGATT
ACACAACTGAATTTAATGCAAGGCTTCTGGTATCCTATGTATACAGCATG
GATAAGTTTAAAATAAATCAGTGTTTTCAATGTGTGAGCATAACGTACCA
AAAAGAAAAAAACATAAAGAGATAACTTATTTTTTTTGTCTTATTGTATC
CTGTAAGAAGTCTAATATAAAAATAACTTGAATCTGTCTCATTATGCTCA
ATAAGTTATAAACTTAAATGAGAAAAAAAAAATTATTTGAATTAATTTTC
AAAACTTCAAGTGTGAAAAAGCAGTGAAATTGGACTGATATTTGGGCTTT
GCAATTATAAGTTCTCTTACATATGGCATGAAGTCCTTGACATGCTACAG
AAATTACTAGAAGATGGAAGATGCAGAGACATTATTGATACATTGTCAAC
TTCAGATTCCACCTTCAACCATTTGATTAGGTTCCTGTAAGTTATGCATT
TGATTGTTGAGGATAAATAGTGCTGTACATATATGATGCTGATTTTTTCT
TATTTAATCCCAAAACTTTATTTCTATTTATGCATACACCAGGTTTATTG
CTGTTTGTCATATGGATATGAAACTAGGTTTCTTGACTTTGGAGAACTTT
AAAGCTGCACTTGCAGGTGTTCAAAGGCAGCCAAAGCTAGAATGCTTGAA
AGGTACAAGTTTTGAAAATTTTGCTTAGCATCCATTTAAAGAAGGATCAT
TGTTTCCGACAACATCCACACACACTAGTTTAGAGTTTTTGGTATAAATT
TTAGCACTATGTTATGAAATATGCACTACTGCCTTTTTTCTTTTTCACTT
TTTTATCTGTCCGTTTTAAAGATGTAACCAAATTGAGAATATTCACACCA
TAAAAGCAGATTGCTCTGTTCTTGAACTCTATGTTCTGGTTTGCATGATG
AGGTTGGAACTCAGAGAGCAAGAATCCTACAACTTCAATACCATAATGAA
AGGTCTGCCTCAAGCATCTCTGTGTTTATTTAATTTCCTAAATTGCCTAA
TGTCAGTTTGACTAATTAGAATTTCTTATTACATATGTCAGAATACAGTA
GCATACATGATACGTTTCAGACTTCCGACTATTTTGCACGCAATGTTTGC
TTACGGGTGCGTGAAGTGCAGTCCTTGTATCTTTTCATAAAATGCATCAT
TCCTTTTACTTCCTCAGTAATTCTGTAATCTGCAATTCTTATTACCCTTG
CAGGCCTTTGAGCACCTTCTACAGCGTGAATTAATTTCTCTTGTGGACAG
TCGAGGACACACTCAGTCAGTTGAATATCATCCAGTCAAGCTACTAATTT
CAGCCCATGAGTTGCATCTAGGTTTAAAATCGTACCGTTGCTGTCCAGTA
AGTTGGCTGAAAGAATATACGTATATATCTAGGCTAAGATGCTCTTGAAT
AATAATGTTACATTTGCTTGCTGTTTAATATCAGAAACCGCTTACAAATA
AATGGATATTTGCTTGCATTGCGGAGTTTAGTCTATATAAAGAAAAAAAA
ATCAGGATATATGCTTTAAATGTGCAAATTGTCATATTACAGCTCATAAG
TAAACTTTGAAGCATACAGTTACAATTGAAACTTTGTTTTGACGATTACT
TGTGTTGCGTGTAGAGGCCTAATTTCTGCTCTCTTTTGCAGGCAATTCTC
CAGAAAATTGTTGATCGAGGGTAAAAACTAAGAAAAGGTAACTTATTTCG
ATGTTAAAAGATTATGTTATTAGCCAGAATTCAGCAGCTCTCACTTTTTC
CCTGGTACTTGCAAGAAAAAAAAATGTCTACGAAACGACTCAGTTGTATG
TTACCTTATGCAAATCAAATTCGTTCCTTTAACTAACACGCCTTTTCATT
GGATCATGATGCCAAGGTTGGAGTTTGCTTCAAGTTGTTCCTCTATGATT
ACGAAGGCATTCCATTATTGTGGCAGCCTGGCAGGCTGAATGAACTCTGC
TATCATGGACTCTATACAATTGAGATCCCCAATTTCTGGGGCTAAAATTT
CAGAGGATGAACTTCTCCCGACGCATCCTCCACCTATAAGGATGGCCTTT
TCTTGTTTTTGACATGTGCTAGTGCCCAGTGATTCACCTTTAAAATCCGA
ATCTTGGTTAATCTTTGGAATTAGCGGTGTTCTTAAATATGTAAGGTAAA
TTCTCAATAGTACCTGTTAGAGTTGGTTTTTTTTAAAGGTATCTAAAATG
GTGGATTGGCCCTCTCTGTTTTAATAAATAGTGCCCAAAATATCACGTTT
TATAGAACATGACCTCAAATATCACTTCAAAACGCAACTTTAACTTTAAG
TTGTGTTTATACAAAATGACACGTGTAGCGTTTGGAGGATTTTTTTTTTT
TTTTTTTTGAAGTTAAAAATGCTACTTAAAGTGGTGTTTTGAATTCAAAC
ACTACTTCAAGTTGTGTTTTGTGTGCAAAACGCTATTTCATCTTGGGTTA
CCAATCTATATTTTTATTTTAAGGTTCAAAACGCTAGTTAAAGTGGTGTT
TTGAAAATTATTTTTAAAAAAGAAAAAAAATATGAAATTGTGTTTGATAG
TTTTCAGTTGATGCAAGACGATCATGGTGTTCAGGGTCATTTTTTTTGGG
CTGATATTTGGGGCATTTTAACTCTAATTTGTGATATTGTGGGCCTTTTC
TTGTCATTGCTCATCGACTTGCTTTTATTTGTCTAGACCTGATCCAAGCG
GGTTCAAGTGCTTGAAGAGCATATTTACCGAAAGAAATATGATTACCTCG
ATAAGACATTCCCTTTATTCTTCCTCTATATTATTTACAAAATCTGACTC
TTTTGGGGTTATAGTTGATGGTTGGTACTGATTTCCATCTCTACTACATA
ACAGGACATGAGAGTTTCTTTCTTCTCATCCAGCTACTCGTGAAAAATAA
CATTTTCAAAATATCTATTATCATTTTTCAAAATGTTTATTATCATTTAT
ATATATTGCTGTCTAGCTAACTAAACATATTAATTTTTATATTTTTAAAT
ATTGTATTATTATTCTTTTTTTTTTCTTTTATCTTATTGGATTGAGCAAA
AATTATCAATCGATGAAGATAAAGTTTTCACGGGGAATATTGACTCTTTT
CGTCACTATTTTAGTTGTAGGGTTAACTCTTTCCCNAAGAACTAGTCTTT
GATTTTTTTAGCCATCCCGATCAATCGGGATCAATGAGTTTGATTTCAAT
AGATTTGAATTCACAAGTTCCATCGTTCTCATCACTTCTTGCTTGATGGT
TAGGTCTTATTTCTACGATGGAGTTCATAATATTTCTTTTCTTGAGTCGA
TTTTCTTAGTCTTTATTGACTTGAAGCTGTTATTTTTTATATTTTTTTTT
GTTCAATGAACGGATTCGTTTTGTTTTTATAAATCCATATTGATTGATGC
TTTATTATGAGGCGACTCATAAACCTTACAAATTGGATGAAATTCTATAT
CTTTGTTTCTCTCCCTTCCTTTACCCTCCCGTTTATCAACATCTTTCCTC
TCTTTACAACTTTTTCTTTTGTTTATGCAAAATAGATTTCAGTTGCTACA
GTGATATATAACTGATATATCATTTCTTGACTGTTGTATTGGAATGTCAA
GTGATGAGTTGGTTATTATTTCTATAGTTATAGTTATTTGTTTATAAAAA
AAGTTGGTCTTTTTTTCCTTTAATCTTAATCCTAAAAAGCTAACGAGTCG
CACACTAAGCATAGCGATTATTTCAAAAGGTCAATCGAGTTTTCATTCAA
CCTTATAGAAGTAGAATAGTTCATTTTGGTTTTGTTTTGATTGAACATAA
AAAGGTAACTATTTTTTTATTCTAATACTAGATCGAAGGGAAGGGAAAGA
CAAGTAAAGTTTAATTGTTCCCTGTCTACAGATATCCATATATTAATGCG
TAAAACTCCAGTCTCCATGTATAGTTCGAACTGTATAAGAACAATAATCT
ATTTTAGCTCGATTGTTTTGAAGAGGAACCCTGTCCTTTCTGATCCAATC
GACACGTGCAATTTCTTTTTTATTGATACTTCTTGAAATTTGTATTTGAA
TTCCTTTTGTATCTACTTGTTCAGTTAATTTAATAGCCTTTTGCATTGCT
TTTTGAAAAGAAACTCTAGTCTTTAATTGGCCGGCTATAAATTCTGCAAG
AATATTAGGGCTTTCGTAAGGTTTTACAAATTGGGATAGTAATGTTAAGT
TTTCAGTTGACACAATTTTTTTTTTTTTTTTTTTTTTGTAATTCAACTGC
AAATTTTTGATTCCTTTGATCAATTTTCTAATAACTTTGTTAATCCCATA
TAGATAATAACCTGGATCACATTAATTTGTTTTGAATTTCTATACGTGCA
ATTTCCTCGACGTAAGAAGAAATTTTCATTTTGTTTTACATAACTTTTTT
TATAAAATCTCTTTTTTTTTCTTTTTATCTTCTTGTAGACCTTGGGAATA
ACTTTTTGGTTGTTTAAGCTAAAGGATGATGACTTTGGGTTGCACAAGTC
TGAAATCAAGTGGAACTATTTTTTGTCCCATATCCCCCCATTAGTACATA
TCATATATGACATGGTTGTATACTTATTTTTCGATTTAATTTTTTTAGCA
TGTGAAAGAGTTTATAATGTGTATCATGATTTTGATATTCATCTAATGAT
ATATCTTTCACTACAATAGCTATATGACAAGTAGGTTTTTATTTTTAAAA
CTACATCATCGAATTTGAGGTTTTAATTTTTTTCGTTATAATATCCCACT
GACTTCATCTTTATTAATAACCAAACTGGATTTATCGGAATCCATATTGT
AATTAGCATTTGATGTTGCGGAATAAACCAATTTCAAAATGGGATAACAT
GCTTGATAAGGTATTAGTTCTCGAATCAATATTGTAATTATTGATCTCGA
ATTGGATCTCAAATTGACAAATTAGTGTGAGCTTATCCATGCGGTTATGC
ACTAGTAATCCATTTCCGCTATTGTGCTTTGGAGGGCTTTCGAGATTCTT
TCGATGACCTATTTTGTGTTGAAGAGATAATTATAGAAATAATCTATTGC
GTAAAGCCCGCGGTACGAATGAAATCATGACTAGTATACGGAAAATACAA
TACTTTTCTATGATATTAATATTTTCTAATTATTATATTTCTCTACCGGT
CCACACAGTGGTACATATATAGTAGAAGATTCGGCAGTTACCACGGCTCC
CGCTTCTTCAAGTGAAATTCCAAGTTGAGGATTTACTCAGAATGCCGCCA
AGATATCGGTATCTTAGGTTTCATTGTAATCTTTAACCCGAATTTTGAAT
CTAGCACCTACTTTAGTATTTGTTTGTGGTGACACAAATCTCTCCCAACA
ATCTGTTGTCCCGGGAGACCCGGGTTCGACTCTGGCTCATCTCAAAAAGT
ATTGGAACAGATACTAATTTATAAGGCATATAAGCCTGCATTGTCAAAAA
AAAAAAAAAAAAGTCTAACAACAACAAAGTTTACTTAACATGAATAGGCA
TTAATGAAACTTTTTACAAGAATCTTCTAAAAGACTCTCAACAAATATTA
ATATTATCAACCAATCAAAATATTTTATTATGAAACCATGGTATTTAATT
CGTCGAATACATCATTAATGTATACACTTTCATATATATATGACGCAACC
CAACTCATATGTTTTATGAATTGAACCACTTAAATAGAACTTGAATAATT
AGAAATTCCCTCTTTAAATCGGTCCATGTTATATGTGTAAATCATAGACA
TAAAAAAATATGAAAATTTTATAGGAAAAAAAATAAAATATGAAAAGAAG
AGGCTAAACATAAATCAATATTATCAAATAGGAAAAAGGAAAGGCTGATG
AGATATAAATTATAAATGAAGTTCGGGTTCGAGTCCTAAAATGATCTAAA
CGGGATTGGTCTATAATGATAGACAGATAAAAAGATTTTTTCAAGATTCT
AATACTTGATATTTTGAAAACGAGCAGTTTGAGCTTAAAAATTCACTAAT
TGGATAAGTAAACAGTTAGTTTCATTATTGAATTGGATTCAGTTGGAGGT
TCTCATTTCTTGTTTAATTTGAATAAACCAATTAACTTGCCATCGAACGT
TTTTTTTTTGAGTTTGATCATTTCACAAAAAAACTCGACCTGTTTTATTT
TGTTCATTATTTTGTTATGAAAATAAATCTTACTAATTCTAGTTCGTGAC
TTGGATCAAATCGAGCAGGTATTATAACTTGAATATGATTGAAAAATAAA
ATAAATTATCATCAAATATCTTCCTAAACAAATATGAAGATAAAAATTTA
ATCATAACAAACTGTGTTGACTTGATTTTTGTATAAATAGAATAAATATC
CATCTGGTAAAAAATCCGACACATCTTACAAGTCGAGAGAATTGAAACAA
TTTTGTTAATGATAACCATTTTGAAAATGAGTATTGCAGTATGCCCAATA
AAAAAATGAACCCCTTTAAAATAGGAAATAGACAAATTATACGTGATCCT
CATCTCGTTTGAAGAATGGAGTGGCCATGCCATGCCCACTTTCATAATAC
ATTAGAATGATATTTTTAATTAATTTTTTATTATAATATTATTATGAGAA
ATATGATAAAAAGAGATAATTTTATCTTCACCGGAAGGAGATTAATATTC
TTGAGCATAGAAATTACTCCCTCCGTCCCTTTTTAGTTGTCACATTTCTA
TTTTTGTTGGTCAAATTGACTAACTTTTAACCATAGATTATAAGTCACGT
TTTCATTATTTTAATTACATCTTAAAGTAGATTAAAAATTATTTCTGCTG
ATATATTTTTCTATTTTTATAATTAATAAAATATTAATAAATTTCAGTCA
AACTAAAACCAAAGGTCACAGTTAAAAAGGCAGACGGAGTATCCGTCCCT
CCCATTTCTTTACCTTCTCCTTTTTGGGTGCATTTCAAAACTTACCAAAA
ATAGTTAATGGATCCCACCACTTCTCCACTTTTTTCCACTGCTTTATACA
TATTTCTTAACTACGGTCTTTTTATACATTAAAAATCAATGGATCCCAGC
ACTTCACCCACTTTTCTTCCTTTTTTCCAATGCTTTATACATATTTCTTA
ACTACGGTGTCCAACATAAGAAATGAGAGGGACGGAGTACAATTTTAGGT
ATAATATCAATTCTTCTGAAAGTTTTAATTTTGTTTAGTGTGTGTGAGTT
TGAATTTTCAACGAAGAAACTAGCTGGTCAACCCTCTCCTCATTGAAAAG
AAGAAGAGGTTAGACTTGCAAATCTTCAAGAGCTTCTTCATTTTGTTGGA
GTTGAAATGGGCGTGCAGTGGCTTCTCGTCTGCCATGGATTAGTCACTCT
TTTGGTGGTTGTCTCTTTTCTCTGCGGCCGCTGGCCTATTTTCGATGGCA
CTTTCATTCAACGCATCCACATCTTCCTCACTTTCGGCGCTTACGACTAT
TTCCAGTACATCTNTTCTCTTCCCCCTCTAAATTGAATACTACTGTGTTT
TTGTTGCAGGAGATTTGTTAATTATATATTCGGTACAAAAGGCACCAATG
CCATCCTTTCTATCGAGTACTATTGCTGTGATCGACCTAATCCTATCTTA
CAGGTTTCTCTCTCTTGATTTTTGATTTTATTATATTATATCTTGCTCAT
TGTTAATCCTATCCTATCTTCTGTTTGTATGCCCAACTGATTATGCACTT
GCAACGCGTAATGCTGTAACTACGATCGAGCTTAGCAATTTAAGTCTCCT
AAATTTCATGTATTGGTACATGTATCTATTAGATATAGTCAGCAAATGGA
ACTAAGATTTCTCCCCTCCAATTTGTGATGCAGGCCATATATTTGGCAAT
TATCGGAGCTACTTATTACTTTATTGTGACATCATCCTTTAACTATATTC
CCGGCCATTACATAGGTGGAATCCACAGGTACCAAATCATTTAATTAGCT
TCTTTTAATGTGTTATTTTCCGATATATGTACATTACAGGTACTCTCGGC
CGTTAATTATGGTTGCAGGTACCTAAGTGTGGTTGCGGTTGGTGTGGGTG
TTCTACTCTTTCTGTTAACTAGTTTCTCTGATCCTGGAATTGTAAATAAT
GAGAATTTTTCTCGTTATGTGTCTGTGTATCCATATGACAACGCCATTTA
TATAGAGAAAGAATGCTCAACTTGCAAGTTTACGAAGTGAGTATCATTAA
TTTGGTGTGGTGTTCGCTAAAGAATATATTCTTTTTACCAAATGCTGATA
GGTTTATATACTTGCTTATGTAGACCTGCTAGGTCCAAGCACTGCAGTAT
ATGTGATCGTTGTGTTGCTCGATTTGATCATCATTGTGGATGGATGGTTG
GCTCTTTATCTTTTAGTTAATTTTAATTTGGCAACTGATGGCCTTGTTAT
ATCTCTTTATTTTGTTTCTCTGAATATTTCTACTTAGCATCGCCCAATTT
TTTGCTAGTTTCTTTAATTTTTATGTGTCATGTCTCTTATTTTTGCAGAA
CAATTGCATTGGAGAGAGGAACACTCGATATTTTGTGGCTTTTCTTATCT
GGTTAGTTATTTGACAAACAGTTGTCAGCTCATAACCCAAAATTTATGTA
TGATTGTTAAGCTTTGTGTTCAGCATATTTTTGCCCTATATGCACAGCAT
AATTTTAGTGAGAGCATATTGACCTCATATCGGAAAACACCTAATTTCCT
ATTGTTCTTATGGATAGGAATCAAGGCTGTCATGTCTGAAAATTCCCTTA
TCCTGTTTTGTAGTTCAATTATGAACGAATATATGTGACCATTGTGTAAT
TGCCTAAATTATATACGTATATTTGTGGCAAACTTAATGTTTCGTCCTAT
ACATTAAAATGGCATCTTCACACGATTACTTGATTCAGCAGTTTCATTTT
CTACTAAGAGCTAAAATGCTTTAAGTATGTGTAGAAGTACCTAGGCCACA
TCCTTTTTACTTTATAGATAATGTTTCGTTCAGTATACTGTAGGCACTTC
ATTCTATGCGTTTATGGAGCAGTAGCCATTGCGTTGATTCTTGCCGGGCA
ACTGAAGGAATCACAAGTCATATATATTCTTACTGGTAAAGTCATGTATT
TTCTTACTGAGTAAGATGTGCTTCTCTTGTTCACATAAATTTCTAAAATC
TTGTTTTAACTCGCACATATTTTTGAGGTTCGAGTGACTAAGTTTGTTTA
GACACCCATCTACAGATATAACATTCAAAGGAAAACTAAAACAATAGCTC
AGCAATTTTCCCAATTTTATCCATGTGTTTTATAACCTTAGTCGTTTCAA
TGGTAAAAAACACTGAGAGTGTAGTTTTCATTTTCCCCTCGTTTGATATG
ATTCTTAACTAGGTTTTTTTCTCCATATCATGGTACAGAATTTTATGGAA
TTGATAATTCATTTGGCAGTTTGGCTCCACATGTTGTTCAAGTAAGTACT
TTCCCTTAACCTTCTTACAATTTGATTTTTCCATTTTCTCTCTTAACTTC
TATATTTGATTGGTCTCTTTTCATTCTATTATTTGTATCAAACTTTAGTT
GTATAAGAATTTGCTACGTAAATACTTTATAGTATAACTTTAGAAAAGAA
CAGTTGATAGTTGTGTTGTGTTTCCGATTATTGAGCAAAGAGCATGCAAT
GAGACTAGAAGCTGTACAATGGAAAAAAAAATAAAAAATTGGTGTGGTCC
TTAATGATTGAATCATAAAAATGTATTTACGTAATGTTGCATAGTGTCCT
GATTACGACAATATTCAAGGAGAGATTTATTTGCTTCAAAGTAGTTATTC
AAAGTCACTGTATTACATAGAGGTTCAATCAAGGATCTATCAGAATGACA
ACCTGAGAACTTTTAATCTGTGCTGATTGATGTTTAGAATATTATCATGT
CCACATTGGTTTTGATGGACAAGAACTGATTTTCAGTTTTCAGGAGTAAA
TAACTAAATATCTTGTTCTCCGGATAAGCTGGTTCTCATGTAAACCAAAG
CTGTGTTATATGAAATATAAATGAAAACTAATTTTCCTTTATATTTCACC
CTGGTCAATATTAAAAAAATAGAATATGTATCTATAGAACCAAAATGTAG
GAAAAGTTCTCATTCTAATAGTGATCTTATCCGAGCACGTGCTTATATAT
TATGAAAGTAATATAATATAATATTATATATGGTGTATATTCATATATAA
TGTATTAAAACAGTAAACAATGCATGTTATAACTCTGTCGCATCTAAATT
ATAATAAAAAAATTCTCTGTGTGTGCTTGCCTATATAAAATACTTGAAAA
TCAAAACAAATTAGTTTCAAAAACAAGATAAGGGTATTTTAGTAAATAAA
TAAAGGTGCGCAAGTGCAACTACCAATTTAGATGTGCATATGTTGCCACC
CTTCTACATTTTATTAATAGAAGCACCAAAAGATTTTTTAACAAAAACAA
CAGAAAAGAGCTCTCAATACCCACTTGACATGCATATTCGTAATTTATCC
ACATTCGATGTCTCCTCACTTTTTCTAGCCGCTTAACAAGGCCACCATTA
TGTTGATGTCCTGGATAGTAATTAGCTGTGTTAATTAACTTCTTTTTTCT
TTTTCTTTTATTTCTAACTCTGGTTTTACTATAGTAAGAATTCCGACTAT
AAGCTTTATTTGTTTTCATTGTAGTTGCTTATGTATTTCTTATTCTCTTG
TAATACCCAATAAACTATATTGATGTTTTTGTGCTAATCATGATTTGTAT
TCTAATAGTTTATTTTGTAACAGTGGTTCTTGGGATCATATAATACTCAG
ATACTGATTATGGTCTTTTTGGCCATAGTGTCTCTTCTACTTGCCGGTTT
CTTTGGATATCATGCAAATCTCTGTCTTACGAACACCACAACAAATGAGG
TTTGTTCATCTTGCTTACAAATTTGTTTAGCTCTGGACTCTGTGCACTCT
TTATCTTCCCTCGAAATACTACGACAGAAGAAAATAATCTTAAGTAATTA
AGTAACTAAGAACAAAGAATTACGTTGGTGTTGAGATCGTAACAAATATA
AAGCTTCTTATGAATCAAACAAATAAATAAAATATGAATCGGCTCATTGA
CCTTTCTTGACCAACTCACCTTTAAAGATTCATTGCTTTATATAGCATTA
AAACCATCTATTTTCATTGTCTAAACTATTCAGGAAATAACAGGTATGAA
CTACGAACATTGTTTTTTTGATATTTAAGAACTTATCTAGTGGGTGTTTT
TAAGTCAAAGGAGGGAGAGATGATGTACCAGATATATGAGTAACAATTAT
AGCTAATAGCTCTGGTGATTCAGTTATCCAATTTTAAAGAAACATCATTG
ATCACCCTGAAAACATGAAGATGATTACACTGATACAGACATACAGTACA
CTAGTGGTACCTATTAATTATAACAGTGTTCTTAAGTATTATGGTTAGGA
TATGATATCAATTTACAATAAGTTTTTGGTTTAACGTTATTGTAAATCAC
GTTTTCTATAGACAAGAATTTTGTTTCCTACTCCTTGCAGAGCACAGGAT
GCTTCATAAGTATATGAGGTATATCCCTGCTCTTACTACACCAAAGGAAC
CTACCCTCAACAATGACATGTGTCTTCCTATACTCTAGAATATTCTTCTA
TAAAATGTGGCACCATACTGAAATATAAAAAGTCCTTGTTTTTATTGAGC
CCTTATAAGATTTTTATTACATGTGATATGGTTCTATTATATGTTGCTAC
AACTAATTTCTGTTTGTCTCGGATGAGGTAGAGGAAAACGTTCGGAATTT
TGGATAGTTACTGGAGTACCTTAAATTTTCAGTGCCATGATTTGACGTCC
ATGTCATGCATACAATCAGTCTCTTAGGCAAGAAAATCATCCTACTATCC
CAGGCATATTGGTTATATAGGACCTTTTAAAGAGTCAGTATTAAAAGTTG
ATTATTGCTATGTTTAGTGGGCTACCAACTAAACTAACTAGTGGTTGAAA
TTCTGTTGTTAGCAAGTTGTATTTGGCACATATGACAGTTTATTCTTTTC
CAACATGTATCGTATTTTGTTAGTTTAAGTGCCTAAATTTAGGGGTTGCG
GAGATGGTTAAGGAATTTGTAATTTGTTTACAAGATTCTTTGAACATGCT
AGTGCAGCTCCAACTTCTATAGAAGTAACGAATCAGTTGTATGACATTAT
ATGCAATTTAACTGAAATTCACGGTTTTTTTTTAAAAAAAATTCTCACTT
GGATTCACAGACTTTTAAGTGGCACGAGTATTTGAGCTGGAAGAGGAAGG
TCAACGAGGCAAGAGCAAGTGCAGAAGCACTTAAATCAAGTTTAGCTGAG
CTGAGCCAAGAGAAGCCTCCTCAGAGCAAGTGGAAGACTTTCTTTCAAAG
ATCTCCACTGAAGGATACAGAACCTGTTAAGAATAATATCTATGACAGAG
GTTATATCCGCAATGTAAGTGAGATCATATTTCCTTTGTCATCAAGACAG
TTATTCAAACAATATAAATCAAAATCAGGCTAGGTGTAGGTTGTCAATCA
CTCTTTTCTCTGCATCCACTAGACAGGACAATGCTACAATGAATTAA
Sequence Length:
14747
Sequence Checksum:
dcf2406a4e2d81289c4e77136f26c34b
View location in JBrowse:
Cds:
>DCAR_001932cds ATGGGTGGCGATAATCCAGCAGAAAAAGCCCTGATTCTCCACCGAGCCAG ACTTAGTGACCCCAATTTCATCTTCGCTCACTTCTCACACTCACCAGACA CCAATTACAGCAAGTTGAAGTTTATTATAGCAAGTTCTGTAACTGAGGCT TGTAACAATTCTGTTCTGCTTCTTGGTCCTCGTGGTTGCGGCAAGCTTGC TGTGTTGGAGCTTGTTCTCGATGATTTGCTCAAAGAGTATCCCGATATGA TTACAACGATAAAACTGAATGGTCTTTTGCATAGTGATGACAAATGTGCG CTTAAGGAAATTGCTAGACAACTGTGTGCAGAGCATCAGTTATCATTCTC CAAGTTGGCATCATTTGATGATAATAACCAATTCATGATAGACATATTGC GGGAGTGTGGATTAGCACATAAAACAGTCATTTTTGTATTGGATGAGTTC GACCTCTTTGCGCAGGGAAAACAACGATTACTATATAGCTTGCTAGATGC AATGCAGTCTGTGTCGTCACAAGCCGTGGTCGTTGGCATTAGTTGTCGCT TGGATGCTGATCAACTTCTGGAGAAAAGAGTACGGTCGCGGTTTTCACAC AGAAAATTGTTGTTCCTCCCTCCCTCAAAAGAAGATCTACAAGGGTTGAT AAAGCACATGTTGCTATTGCCTACAGATTCAAACATTCCTGAAGATTACA CAACTGAATTTAATGCAAGGCTTCTGAAATTACTAGAAGATGGAAGATGC AGAGACATTATTGATACATTGTCAACTTCAGATTCCACCTTCAACCATTT GATTAGGTTCCTGTTTATTGCTGTTTGTCATATGGATATGAAACTAGGTT TCTTGACTTTGGAGAACTTTAAAGCTGCACTTGCAGGTGTTCAAAGGCAG CCAAAGCTAGAATGCTTGAAAGATTGCTCTGTTCTTGAACTCTATGTTCT GGTTTGCATGATGAGGTTGGAACTCAGAGAGCAAGAATCCTACAACTTCA ATACCATAATGAAAGAATACAGTAGCATACATGATACGTTTCAGACTTCC GACTATTTTGCACGCAATGTTTGCTTACGGGCCTTTGAGCACCTTCTACA GCGTGAATTAATTTCTCTTGTGGACAGTCGAGGACACACTCAGTCAGTTG AATATCATCCAGTCAAGCTACTAATTTCAGCCCATGAGTTGCATCTAGGT TTAAAATCGTACCGTTGCTGTCCAAGGCCTAATTTCTGCTCTCTTTTGCA GGCAATTCTCCAGAAAATTGTTGATCGAGGGAGATTTGTTAATTATATAT TCGGTACAAAAGGCACCAATGCCATCCTTTCTATCGAGTACTATTGCTGT GATCGACCTAATCCTATCTTACAGGCCATATATTTGGCAATTATCGGAGC TACTTATTACTTTATTGTGACATCATCCTTTAACTATATTCCCGGCCATT ACATAGGTGGAATCCACAGGTACCTAAGTGTGGTTGCGGTTGGTGTGGGT GTTCTACTCTTTCTGTTAACTAGTTTCTCTGATCCTGGAATTGTAAATAA TGAGAATTTTTCTCGTTATGTGTCTGTGTATCCATATGACAACGCCATTT ATATAGAGAAAGAATGCTCAACTTGCAAGTTTACGAAACCTGCTAGGTCC AAGCACTGCAGTATATGTGATCGTTGTGTTGCTCGATTTGATCATCATTG TGGATGGATGAACAATTGCATTGGAGAGAGGAACACTCGATATTTTGTGG CTTTTCTTATCTGGCACTTCATTCTATGCGTTTATGGAGCAGTAGCCATT GCGTTGATTCTTGCCGGGCAACTGAAGGAATCACAAGTCATATATATTCT TACTGAATTTTATGGAATTGATAATTCATTTGGCAGTTTGGCTCCACATG TTGTTCAATGGTTCTTGGGATCATATAATACTCAGATACTGATTATGGTC TTTTTGGCCATAGTGTCTCTTCTACTTGCCGGTTTCTTTGGATATCATGC AAATCTCTGTCTTACGAACACCACAACAAATGAGACTTTTAAGTGGCACG AGTATTTGAGCTGGAAGAGGAAGGTCAACGAGGCAAGAGCAAGTGCAGAA GCACTTAAATCAAGTTTAGCTGAGCTGAGCCAAGAGAAGCCTCCTCAGAG CAAGTGGAAGACTTTCTTTCAAAGATCTCCACTGAAGGATACAGAACCTG TTAAGAATAATATCTATGACAGAGGTTATATCCGCAATGACAATGCTACA ATGAATTAA
Pep:
>DCAR_001932pep MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEA CNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCA LKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEF DLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSH RKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRC RDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQ PKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTS DYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLG LKSYRCCPRPNFCSLLQAILQKIVDRGRFVNYIFGTKGTNAILSIEYYCC DRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVG VLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARS KHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAI ALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMV FLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAE ALKSSLAELSQEKPPQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNDNAT MN*