Resource Type:
Gene
Organism:
Name:
DCAR_001938
Identifier:
DCAR_001938.gene
Locus Tag:
DCAR_001938
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_001938, is a part of gene, DCAR_001938. |
| The genetic_marker, MK003616 K1060, is located in gene, DCAR_001938. |
| The genetic_marker, MK008584 85036.67009, is located in gene, DCAR_001938. |
| The genetic_marker, MK008585 85036.14722, is located in gene, DCAR_001938. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_001938 | DCAR_001938.mRNA | mRNA | DCARv2_Chr1:22532757..22549655 |
Sequence:
ATGATGATGACGTCGAGGATGACGACGATCACAATGATTCACGCCGCTGC
TCCTCCTCGCCGATTTCCCGGCCCAAGCTGCCCCCGCCGCCCATTTCTCA
AAACCCTAAAACCCCAATTAAGAATCCTCACACTCACAAACTCCTCTGCG
CACCCTCCTCCTCCCTCCATCTCTGCAAAACCCTCTTCTCAGTTGCGAAA
AACTCGGAACACCGCCGTCGACGACGACAGCAAGCTCACCGCGCTCCGCT
CCCTCTTCTCCACTCCTAGCAATGCTATTGACGCTTATATTATCCCTTCT
CAAGATGCTCATCAGGTTCTCCCAATTCCTCGTATTAATGCCTAGTTTAC
GAATGCTTTTTCGATGTTAAATGCCTTGTTTTTTCTTGTTTGATTTCGTT
TGCTGTATTGAATGTGAATGTTTTCGTGTTTCGGTTGCCAGAGTGAATTT
ATTGCTGAGTGTTATATGAGGCGGGCATATATATCGGGATTCACCGGCAG
TGCTGGCACTGTGGTTGTCACAAAGGAACTGGCAGCTCTTTGGACTGATG
GGAGATATTTTCTCCAGGTTTGTCATGTTTATGTTTGTTGTTTAGTTATG
ATTTTCCTGCTTAGATTTGTAGGGCGCAGTGTCTAAATACTCCCGTCTTT
CGTTTTCTAATTAGGCAGAGAAGCAGTTGAATTCTAGCTGGACTCTCATG
CGAGCTGGTAATTCAGGGGTGCCGAGCACTAGTGAATGGCTTAATAATGT
TCTGTCTCCAGGCAGCAGAATTGGCATAGATCCTGTGAGTAATACTAAAT
TGCCAAGTTTTAGTTGATTTTGGTTTAAGATTCTTATGCAAAAACTGATG
GTAGAAGTCGTTTTTTTTCCCGTCCGCACATTGAGAGCTTCATTTTTGGT
TTGTGTCCTTTGTGTGTACGTAGGTCTCTTTGCATCTTGTCTGTATATCC
ATTGTTTCTTCAAATTGTATTCCTAATCTGTATTTTATTATATGAAGGCT
CATGCTATCTAGTTAGTAGAAAACTATCCCTGCAAATGTTTATTTCATGG
TATATATTACCCACATCGTTAATTGTATTATATATTTATGCGTATGTGTG
TTATTATATTTTATGTTCGTACTTTTATTTTTCTTTTTTTTTTTGTGTAA
CATTAATATCTCAATAAATGGATTACATGGCTTGGATTATATATGATTGT
TTCTGATTCCTTATTTTTGTTTTTATGAAGAGTTCAGTTCCTTTTCTCTT
CCAATGCTGTAGAAGAACTTAGAGAGGCTATGACCAGTAATAGTCATGAG
TTGGTATATTTGTACGAGTATAATCTCGTCGATAAGATTTGGAATGCAAG
GCCAAAGCCTCCAAGTAATCCGATTAGAGTGCATGATCTTAAATATGCTG
GAGTTGATGTGTCTTCAAAGCTGTCTAACCTGAGGTCTGAATTGAGTAAT
GCTGGCTCATCTGCAATTGTCCTCTCCATGCTCGATGAAATTGCATGGCT
TTTAAACTTGGTAGCTTTCTAACTTTTTTATGCTATATTTTTTAATACTT
ATTAAAGTAGAAGATAATAATAGCATTATAAACTGTATGTGGTTACATTA
TATCTTCCTCCAGCATTATAATGTGGTTACATTAATCTCAACGAATCTCA
TTTGATTCATACATGATCCTTATTAAAGTAAAAGATAATAATAGCATTAT
AACTCTGATCACCTGAAGGCTGAAGCAACATCTATATTATATCTTCACTC
TTCCGCATCGGAGTTATAATTATGTGATTAGCAATTTATGATTTTTGCGA
ACTTCTATCTTTATTCTTTAGTCGGTGCACCACTAGGAAATTGAGAGTAG
CAACACCATTTCACCATGCTAAAAGCCAATAATATTTTTGTTGACCTCAC
TTCCCATAATATTGTTATTGCACTGTTTTCTTCATCTTCTTATCTGTGAA
GATTGGCGATCCATGTTATATGCTCACTATGTCAACCATCTTCATTTTCT
CCTCTTACAATATTCATGATCTATTGATCTCTATATACTACATTAGCTGG
TCGTAGTCTAACTTGGATCTAGTCAAACTGTATCTTGATACTGCTATTTA
GCAGTCACTGGTTGCATGTCTCGTTTAAAAATTAAAATCTTAGAAAATTG
AATATCCATTTATTAGTCCAGTAGTTCATTAACAAGCTACCTCCACAAGG
TTGCTGCCCCAAAATAATGTCTATATAAAAAAAATTGCGACATAGTGGCA
AGATAAATATTTAATTAAGAACTACTTTATTTGCATGAAACAGGAACATT
GTATATTACATTTTGGTCCTGCTCACATGAACCAAATTGAACAGACGCTA
TACCTTCTATGATTTATCAATATATCCTGCAAATAGTGGGAATGCATGTT
TTTTTTTACTATTTTTATTTTTTAACAAAATTATCATAAATGGATTTCTG
TACTCCAGTTAATGCTGTTATTTTATTGTGGTGCTTGTACTCGTCGAAAA
ACCCAGTTGTACGCGTGTCAAAACAACCCGGATATGGACATGAGATGTGC
CATTTGGAAAATTGAATATTCATCTTTGTTGACCTCTATCTCTAAGACTC
TAAGCGGAACAAAAAAAAGAAGAAAATACAAGAAAGAGAGGTTAAATTGA
TGTAGAATAAGAGTGAATGAAAACCCTCAACTTGTGCTATTGTTATATAG
TATAATTAGGTTCCCAGATCCCGGTAATACTATTAGACAACTCAATTGTT
GAAATATAACATAAGATCCATCTGGGGCCTTCCTCTCTTATGCCTTAAGG
TTTTGGATGGATTGTTTCTCAACATGGTATCAGAGTTCTGGTTTGGCGGG
GGTCTTAAGTTCGACTCTCCGTCAACCCCAATATTATCACAATATAATAT
GGACACGAAGACATTAATTGTCCCAAATTATGGGCTCCTGTGGTCCACTC
TTCAACCCAAAAAATGGGATTTCGAGTGAGGGGGAGTGTTGAAATATAAC
ATAAGATCCATTTGGGACCTTCCTCTAGTACCTTAAGGTTGTAGATGGAC
TGGTTTTCAACATTGACTTCTTCTTGTTCTTTTTTGTCGACGACCTCTTA
TCAATAAAATTTAACTTTAAAATTTGAAATTGACATGCTTTAAATTTGTA
TATATAATAAATATTAATTTACCTCTTTATTCAAAAGTTTATTTATTATA
TTTGGATTACGTTATGGGTATTATTTATAAAAAAACATATATATTAATTA
AATTAAACTATAGGTAAAAGAGTATACTAGATTAAATTAATAATTGACGT
GTCCAAATTTAAGTTTCGAATTCTTAAAAAAAAGGATCCCTCAGTTTTTG
ATTTTGGAGGTCAATAATTTGATACTCCGATTTCTGTCTTTCTGTCTGGG
TTGGATCCTTCTAAAAGAATAAAAGGAATTCTACATGTTCGAGTCTGAAG
TTGATTATGGATAGAAAATATCAAATATACTTTTTAAGTGTATTATAAAG
TGTCCTTTTCTTCTAAGTTCTAAGATTTGAGGCAGTCCTGGTTTTCTAAT
GATTGGAGTGCTATTGTGATCTTTATGTCACACAAACAACTGTACTATTT
GATAGATGAGTGTTGGGTGGCAAGTTGTCCCATGAGAAAGCTATTGTACC
CGGTAAAGTTGTTCGAGTAGGAACCCCTTGTCTAAGACTAAATTAATAAT
TTAAAATAGTTACTTCTTGTTAACTTGGATACTTATGTTTGTACTAGATC
AACTACCATAGCAACTTGGATACTTATGTTCGTAATTGTCTGCGAATGTT
TACCTTTTTAATGTGATACATGTTACTTATGTCATTCTTTTAAATCTTTT
TGTATTTTGTTTCTAGTGGTCTGCCATGGTAAACATTTTTGAGTTTGCTT
AATTTTTCATGTAAGAGGTGTTTGATTACTTGATTGTTTTTCCCATGTTG
TCCTGTGACATACTGATGCTGCGTCCAATCATGTTTTCAGAGAGGGAATG
ACATTCCACATTCACCTGTAATGTACGCGTACTTGATTGTGGAGGCTGAT
GCTGCAAAATTGTTTGTTGATAATTCTAAAGTTACTCGGGAAGTTGTGAG
CTACTTGAAAAGTGCAGGTGTAGAGTTGAAAGCGTATGAATCAATTCTTT
CTGAAATAAAAAGGTGCGTTTTGGTTTTATTTGGTAACGTTCAAGTGCAG
AATATTTAATGCTCGTAAATTATGCCTTCACTAAGATTCAGAAGAAGGGC
ATCCTTTAGGCTACAAAGTTACAGATGTGTATGTGATTTTTTTTATCAGA
TTTCTGTTTGTCTAGTGCCTCAGATCTCTAGCAAGTCTCCAATCAGTAGA
TAATTAAATTTACACGTGATAATTTTTGTCAACTATTGATATAAAATTCA
AAACACAATGAAGCATTGTTTATGACAGTAGAATATATCTTGGCATGCCC
AGAACAACCCGGGATTGACAAACATGAGCATCTCTTTTGCCATTCAGTTT
CCTAGTGAGAAATATGACTTCAATTTAGAGTGAACAATTTGTGAAATTTT
TCCTTTCAGTTTAGCAGCAAAAGGGGCACACCTTTGGTTGGACACATCAT
CTGTTAATGCGGCTATTGCATCCATATACGCAGCTGCCTGTGATGAATAT
AGTGGGGGAGTTGGGAGCAAAACCAAAGTCAGGAACAGCACTACTGGTCA
TTCTGGAGGGCCTCCGGCTGCAATTTATAGGCCTTCTCCGGTCTCACTTT
TAAAGTCTCTTAAAAATTTTGCTGAATTGGAAGGGATGCGCAATTCTCAT
CTTAGGTAAATTTGATAATATGAACCTTTAATAAAATTCCATTTGAACCA
GGTAATATTCAGTCTTGGGTTTGCCAATTTCAAGAACACGCTAAATCACA
CATTTTTAACTTGTGGACCTTGTGGCTAAGTACTAACCGCAAAAATTTGT
GCTCCTTTAACAACACTGATTTTCGCAATTTTCTCTTCCTTTTCAGTAAT
TTTTTTAGGCTGCAGATTGCATTTAGCTACTTGTCCACTTCACACATACA
TATCATTATAAGGCATGCACATAGCTAAGTAGTGAAACTCTCCTTGTCAA
AAGTGTAGGACAGCACCTAAAGACTGATTTATATAGCTTAGCCAGGAAGC
TTTTGCTTTTGATTAGATAAGGGATTACAGGAAGGCTGGTTGTAGGACTT
GTGCCAGTCAGATCTCTTCAATTTCTTTTAAAGAATCATCTATGTTGGTC
AACTTCGGCTGAGGAAGCACTACTCTAGAACAATCAATGAGGAAGCCCCA
AAGTGCCTTACACTAAGTAATTCAAGCCAATCCACATTAGGACTAACGGT
GAATCACTTTTTTCCTTAGACCTACCTAATACAACTCCATGAGCAAGATG
AACGGCTGTAGTAATGGTAAGGATCACTGTGGAAACCTTTTAAAAAAGTT
TGAACATGGGAGAGAATAGTCTGTTATTTTATTGTCTTTTATGCTGACAT
AAGCAAAGGGTTACAACACAACTTTTTAACTACAATTTTTCCCTACTATA
GTATACATTATTGTAGGAAAGGGTTTCAGTACGACTTATTCAACTCAATA
TACATTTATTGGTTTCTTGGTTCAAATATCTTTGTCGTTTACTACAAAGT
AAAGAATAAAAAGAGCCACCTAATCCGCGCCTCACATTTCCCTTTCTGTT
GTTCTAGCATAGATTAGAATTAACTACAAGTGTACCATCAGTTTACAAGA
ATGCAGGCTTGCTTTCTAATATTTTAATGAATATATTAAACTCAAACACC
ACAACATGAATTCTAGATACACAGATTATTTAACTAGCTACATTTAAGTA
ATAAACTGAACAGAAGTAAAATAAGGCATACCGCACCTAACAATTATAGT
TGTCCCTGCTTAAAGTGAACTGATTCTTATTATTAATTGAAGCTCCTAAC
TTAACTGTTACATTAAAAAAATAAATTAATGTATAAATATTTAGAAACTT
TTATCATAAGATATTAACAATAAATATAATTGATCTTTCCGTGTTCAGGT
TTGGTTTGGTGAGATATATGATTGCTGATCTTGAACTCTTTACCTTTTAC
TGGTACGCCATCCAAGTGTAGACATATATTTGTTCTCTGATGCTTTCTAT
TGCAGGGATGCAGCTGCTCTAGCTCAGTTTTGGGACTGGTTAGAACAAGA
AATTCAAGAAGATATTGTATTGACAGAGGTAGCAGTTTCAGACAAACTTC
TAGAATTTCGTTCCAAGCAAGCTGGCTTTGTTGGCACGAGCTTCGACACT
ATAAGTGGTAATTAAGATTCATCCTTGTTTCAACAAATTTGGACTAGCTC
CTTAGCTGGTTCCTTTCACCTTGCATTTGTGCGCTTTTAATTACGCTGCT
TGCATGGTATTGTCCAAATTTGTAGTCATTGAGATAATATTTTTTCTTAT
AATTGTCTGGATTGTACATTGTATATATGTTTGCTGCTCAGAGGATGCAG
GAGACACAAGAGTAAATATTATATTTCTAGTCCCTCCGTCCCTTTTTAGT
TGTCACTTTGACTTTTTACACGTAATTTAAGTTGATTCAAAAACATACTT
CCACTTATTATTTTTTAAAATTTTCTTTTTATGAATAAAAATATAAACTA
TAAACTTTAATTCAAGAAAAGAAAATTTTAAAAATAATAAGTGGAAGTAT
ATTTTATAATCACCTTAAATTACGTGTAAAAAGTCAAAGTGACAACTAAA
AAGGGACGGAGGGAGTATATAAATTAAAATAGAAGACAATTTTTTTCGTA
TTCCTCCTGGACTTAAAAAGAAGTAAATGTTTATGCATATTATATGCACA
TACATATGTGTGGATATATAGTTATATACATGAACACATAAATTATGTAG
TTTTTTGATATATTTCTTATAATATAAATTTGATACATCTCAAATTATAA
TTATCATATCACAGGGAAATAATGGTTTATCTGAATACTCTGTTGTAGTG
TATAATATAAATAATTGATAGACGTCAATATGATAGTTTGCATCTTTCAA
TATGATACTTTTGCTTACATTGTGCAGTTATTAATTCTAGAAATATATTT
TAATTTCACTAATTTTTTGGAAGAAAAACATGATTAATTGTTTATGGGAG
TGTTCTACATGATAGACAACAAACCTGCACTTGTCAAAAAGGTCTGCTAA
AATTGGAGTTGTATTCTATGAGGCTTAGCAAGTAAACCTGTATACTCTGG
CTAACGTTGTGTGATTTTGCTCTTAGTGATCGGGGACACATCCACTATTA
AAATAGTTTATTTGTTTAAAAATACTCTTTAGCATGTGTACCTCACATTC
TGGCATGAAGCTGTGATGGGAGACAGTTCATTTGATAAGTGATAACTTGT
TAATCAGTTAACTGTTGTCTTAACATAAAGGCTTGTTATTTTTGTCAAAG
CACATGCAGTAGTACTTTATTTACACTCTGGCGATGTAGGAAGCCAAGAA
TCCTATATTCTGTGAAACCCTTATTTTTACTCCTTGCAAGGAACATATGA
ATTCGAAGCTATGGTGCAATCTCTTGCCGATTAGTATTTTAATACAACCA
AATCCTGTTAGTATTGAATCGCCAGCATAAATGATTTTATCAGTTTTGCG
CTCATGCATAATTTTCTAATATTTTTACGTTATTCATATTCAACAGGTTC
TGGTGCAAATGGCGCAATAATACATTATAAACCAGAACCAGATAGCTGTG
GCCTAGTAGATGCTAAAAAACTTTTTTTATTGGATAGTGGAGCACAATAT
GTTGATGGAACAACTGATATCACTCGAACAGTACATTTTGGTGAACCTTC
CGCATGGCAAAAAGAATGTTTTACCCGGGTTTTACAGGTAATCTTAACTT
AGTTACATGCTTAGCATACTTCAATTCCATTGCTACACATATATTTTACT
CTGTTTGCTTGCATGTGTGATGATGTTCGATTGCAGGGCCATATAGCTCT
GGATCAGGCTGTCTTTCCGGAAAACACCCCAGGCTTTGTATTGGATGCTT
TTGCTCGTTCTTCCCTTTGGAAAATCGGGCTTGATTATCGGCACGGTACT
TTTTCTACATTACTTATGCTTAATTTACCATTGGATTATTGATAATATGG
GCTAGCAGTTTATCTTATCAGGTACTGGGCATGGTGTTGGAGCTGCTCTT
AATGTTCATGAAGGTCCTCAAAGTATTAGTTATCGTTTTGGAAATACGAC
CCCGCTGATGAAAGGCATGGTTGTTAGCAATGAACCTGGTTATTACGAGG
ATCATGCTTTCGGCATCCGTATTGAGGTAATACTGCCATTTAAATTATAA
TTACATTTGTTTCTTTACCTGTATTGTGACAATGGAATAGTTTGTTTTGC
AAGTGCTGTGTTTTCGCCACGTATAAACACACGCCCAATGACAATTCTTA
TATGGTTTTGTACATGGAAATTTCTCAAATTAAATTATATGAAAACAATC
ATGAGTTGGGCATTACTTATTGGCTTTGATCTCTTGTCCTTTATTAAAAA
GAAAAGATGCAGATGAGATTTGAGGAAATCACCCGGATCCATCCACCCCT
TGAGGAAATCGCAGACTTTGTTTTACACAATTCTATTAGCAGACAGAAAA
AGAATTTAGGGTATTTTAAATGTGATTTGTTGTTTACAGATCAATAGGAT
TAAGAGTCAGGTGAGAACACGATTATCAAGTGCAATACTATTCATTTTAA
GGGTTTAGGGTTTGTGTATGTATATTCTTTTAGCCTGATAGAATAGACCA
TCATTATAAAGAATTTTTCATTTTTGGTAAGATTTGCTTTTAAAGCAAGC
ATGCACAGAATTGAATAGCTTGTGCAGTGATGTGTTTTGAACCTTTTAAC
TTGTGTCCAGAAATTAATTATTTATTAGTTCACCCAGAAAAGGACCGTAA
GGTATATTGGGACCGTTTTGATTAACTTAAAAAGTGAGTTATTGCTTATA
AGTAAGGAGTTACTTATAAGTGAAAAGTAACTTCTAATTTATCAGTTTGG
ACACTTATTGGTAATTTATAACTATTCAGGTATAAAAACTAGTAATTTAA
TAATAGGATATTACAAAATATCTTTTAAAGTGATCATATATCTACATTTT
TACGAAGTCAAACTTCAAAAATAAAATACGTCGGTGAAAGAAGTTAGGAT
TTTAAGCTTACAAGACACAATTGTTACACATAAGCTGATTCCTAACAGGC
CCCATTGTCTTCTTGAATCACGCAAGAATGGGAATAAATTTCTGAATCGA
TCAATTGTCAAAACCATGGGGCATGGACTGAAGTGAGATATTTCATTAAT
GAATATTATACAGTAATAGACTCTGAAGATAACTAGTATTTGTTGAATAC
ATGAATAGTCACAAAACCCTAGATGGCTAATATTGTTGATAATTTGATCA
ATCAATCATCTCAGTCTGAACTTCCTTATAAACTGCATCAGTATTTCCTT
GATAGCAACTTCATTATGAAACAAGAAGCAAGACCTGTAATATTGGAACA
ATAAATAGAGTAAGGTTTCGAGCTTAGAAGTATAACGTTTCAACTAGAAA
CACGGCCTAATTAGTGGTTAACCACTACTACCAGTGTTCTTAGGTGCGAT
TTTGTCTTTCCATATACAAATTAAGACACCAACTATGAACTTATGTCAAC
CAAATATTGCCATTTTTATATAAAATTATTAGTTTATAGTAATATCAGAA
GTAAACTTTAGTGCACCCGTTTATTTTCCAAATATGTATCAAAGTAGTTT
CAAACATAATATTTATATAAAGGGACAAGTCTCATAAGTTCGTAAAAAGG
GCTCTAAGATACCTCCTAATCGAATATCCGGCTTCTTAAGAAGAAATTTT
CTAATTGCAATCGCTCCAAGTCTTTAACCTGCAGGCCGCAGCTGGCTAAA
GTCAAGATTTCTAAACGTTTGCCATTATTAGCTCTACAAAAACTATTTAT
ATAATTGGAAACTAATAATTACAACAGAACTTGTGCTAATATTTGAAAAG
CGGGCGTCCAGGCCTGTTTTGCGTGGCAAAAAATTTAAAACGTCATTATT
TTTATTTATACCGTCATTTTTCCAGTGATGTGCCCTATTGATTTGCCACA
CTGATTTCTCCATCAGAAGATTATATCTATTCTTGCTCTTTATACAAATC
GATACAGCCACCACATGCTGTTTCAACATTTTTATGCTCCCTGTTCCTTG
TGAATTTGAGTAGTATGTTCCAGAATGCTTATATTTTGATTTTGCTACAA
ATGATTTTGTCGTTTATTGGGTTTCTTATCAAATTTAAGTGGTCCAATGA
GGGTTATCTTCTTTCTTTGTTACTTTCTTGGATTTTTTTCTTATACATGC
ACTTCTTTGGTATGCAGAATCTTCTTTATGTAAAAGAAGTGGACACTCCA
AATCGCTTTGGAGGTATTGAATATATTGGTTTTGAAAAGCTCACATTTGT
TCCGATACAGGTATACAAACAATGTTTAGGTTTAATATCTTAAAACCATT
AACCGTGTTGTGTTTATCCAATCCTAATGTTGAATCTCGTGCATGGTTTG
TAATTATACAATAAACAGTTGAACTCTTTAAATATCTCATTTTCAACTGA
TATTTGGGCCAATAGTATAATCAGCTGTTACTAATTAGTGTTTTACCCTT
TCCTCCGTACAGGCAAAAATGATAGACATGTCTTTGCTTTCTGTTACCGA
GATCGATTGGCTCAATGAGTACCATTCTCAAGTTTGGGAAAAGGTCAGGA
CATCTGGATTATTTTATTTGCTCATCTCTCATCTACCCCCCCTCCTTTAT
CCCTCTTGTGTGTGTGTGTTATTGCTTGAGGGTTGATCTAAGATAAGCAG
GGTTGATGTTGCAAGAGTAGACAATCACTACAGTACATTAACAATCTGTG
AACATCTATACTTTGTTGTCTGTGTTTTTCATTAGTATAATAACGGCAAT
CTAACCTTTGAATGTCACATTAAAGAAAATTCTCCAGCATAATCAGTAGG
GGTTGCAATTTTGGGTACAATCAATCTAACCTTTGAATGTCACATTAAAG
AAAATTCTCCAGCATAATCAGTAGGGGTTGCAATTTTGGGTCGATTGTAC
CCGGTCCTTTTTCTTGATCAGCCCAACCCCGACCTGAAACAGGTTGAGAT
TTCTCTACCTGAGCACGACCTGGTATCAGTTTTAAAATACACGAACCCAA
CACGACACGAAATATAAATGGGTTGGGCCAGACCCGACCCGCATCAATAT
GACAACTGCAAGAGTAAAAGAAAAATCTTACAAATGAAGATGATACAATA
CACACTTATTGACATTTATATATACACGCACAAATGCAATTTTTAAATTA
TAATGATACAAATACATGCATAAATACACATATTTTCAACAGAACACATA
TTTTGACTTGGTAGATTTGTAAGAATTAAAAAAAAATACATATTTATGAA
GGTTATAATCAGAACATAAAAATAATAAGTATTGAATGTTTGTAAGTAGG
GTTGTGACTTTAGTATAATGAAAGATAAGGTCTCTCATCTTTTATTGGGC
CTATTGTTGGGCCATGACCTAAAACCAAGGAATCAGTCATTTTGTACAGA
CTGCATAAATATAGTATCAATACTAATGTATTTTGGGTCAATTTAAGGTT
CACCCGAAACTGACTCAATTTTTTCAGGTAGATTTTTACCCAATCTGAAC
ATGACCTGAGACTCAAGTCCCCCGAGCCCAATTCGTATTGTTTCATGTCG
GGTTTCGGGCCGTGTCCAATTTTACCAACCCTAATAATCAGTGGCTAATT
AATTGTAAGAAGAATTGAATATATGTTGGTGAGAAATTGAAATTTGGTTG
GTGAGAAATTGAATGTATGTTGCCAAATAATTTAATTTTATTCAGAGAAA
AATACAAGTTGTCAAGAAAATTGAACTGTATACCCGAAATGATCTGCGAG
AGATTTGTTTGTGGCAAATTGTACCCACAGCAACAAAATACTATATAGTA
AAATATATTTGGGCCCAACTACCCCGACTTGTCCTTTCGACTGGTAGTTC
GCTTGTGTGTGAAGTTGTGAACATGCAATATGACTAACTAGGCAGCAAAA
CTGTCATGCCAATTATGCTAAAAACAATTCTAAACGATCCGTCATAGGTA
TCTTGTGTTTTATATATTCAGTCATTTTGGCTAAATGCTATTTTTAGGCT
TATGCAGGAATGTTCCTTCATATAATATCATATAACAAGCAAGAATGGAA
TCTTGACAGTTGTCTGTGAACTGCATAGCATATTATCTAAATTCAGAGCT
GCCAGTAGTAGTATAAATATATGCAACTATTTTCTGTTTTTTTTGACAGG
TCTCGGTATTGCTGAATGATTCTCCTCGCGAGTGGCTTTGGAGAAACACA
CGTCCACTTGAGAAAGTGTAACTTACGATGGTTTTGGCTTTGAAACCCAC
GACACTTGTCAGAGCCTAACTTATGATGGCTTTGTGTCCAATTGCTTCTG
TATGTTGTTCTGCGAGTGGAAGCTTCTATAACTTTGGAAAGTATATGTAC
ATAAATCAGATAATTTGCTTGATAAAGTAAGAAGCATGTATGAACGCTTT
TACTTGAATCTTCTAGTAGACATCTAGGGAGATGAATTGCTTATATGGTT
ATACCTTCCCATTAATTTATACAATGTAAACCTTGCAAATGGTATAATGC
TTATAGTGCTTAAGGGTTTGACTTGTTTCCATTACCTTATGTTTTACAGG
GTCATTTGATGAGGAGTAATGTATTTCAGTACTACAAATTGAAATGTGTA
TTTGTAATTGTTTCATGGTCTTCTCAATTATTTTCATGGGATATCGTACA
GGTAAATTCTGATTTCTACCCCAGCGATGTTTCTGCAATGCTAAAAAACT
GCTCTAGGGTTTTGTCCCAATATCAGACTTCGCCATTATAGCATGACCTA
AATCTCTAAGAAAATCACCGACTGCTGCATATTCTTGAAATGCTCTGGTA
TCAGCATTACACTTCAATAGCTGCGGCAGAAACATGCACAATCCCGTGGC
AAGCACGACCACTGCTGTCAATGCTCTGGAAACAAATTTCGGAAACCTCA
ACCTGTTGCCAAGTGCTTTTTTCACGGCTATCTCCGTGACCAAAAAGAAC
CCATGGAACAAAAAGAACAATGTGATCTCCCACCCTGGCCTTGTTCTCCC
CAAGTAGTAGAATATGAGCTCATGCATGATTGCGGATACAAGAAACGTGA
TCAGAATTGCCGGAACATACGCCCACCGGCGTCCTAAAATCACGGAAAAG
ATTTTGAGGGTGGGCTCGTATGCCGTGGGTCGGAGAATACGTGTGACCAT
AATGTTCCATCTCCTACCCCAGAAGTCTTGGAGCGAGGTGGACAAGTAAG
GTTCATCAAACGGTGGCTCGAGCTCCAGACCTAACAGAGCTCGAGCTCCG
GCAGCCAGTCCAGCCAGGATGAGTTCCAGAACAAAGTATACATGAAAAAC
ATACATAAACGGAATAACTCTCGGATGCATGTGATCAACATAGTCATACG
CACGAACAAACAGAACTACAAGAAGAACTTTTGCAGCATAACTCAGAGGC
GCCTTCAAACCATGCCCCGATGCCTTCGAAGACGGGGTCTGCTGCAGAAT
CCTGATCGGAAGTGAACCAATAGCCAGAAAATGTATGAAGGAAACAGAAT
GGCCCGAAAGAGGGCCAATGTCGAAACACAACATAAGCAGTTTGAAGTTA
GAAAGCCAGGCAACAAGAAATGCAGTCATGCCTCCGAGATGGATAGAATG
CAAGCTCAAAGGAAGGGCTAAGAAAAGGATGATGACTGGGAGAAAAGTGA
AGAGTCTTGACAAGCCTGCGGGAATGATCTTTGCAGCGAAAAAACAGTAA
GACAGAGAGATGTAAACTGAAATCCATACCAGAATGCAGGTGTTGATTTC
CCCTTGCATCCAGTTTTTGAGAACTTGCAACACCCCTAGTTTCATCTTTA
GTTTTTGTTGTGAAATCTGAGAACATGGACAGTACAGAAGCGCCTATCTA
CTTGACTCACTACAGCTCCCTGGCCCTCGCAGTTAAGGCCGGCACTGCGT
GTCAATATTATATTGGTTTCTATGATTCTACTTATTGTCCTTTTATGTCC
CTAAATTCCGTATGTTAATTTTTTTTGTCAGATTAGTTTTATTATATTCT
GAATAGTTTATATTGGTGGACGAAGACGGTGTGCACTTTAAACCTCATAT
AAAAATTTAATATCTAAATTTTTGTTCAGATTTTTTTTAAAAGAATAAAT
TACATTAAAATACGTGTCGAGAAGTGAAAACTGTATTAATCTTTTACTAT
AGAACACTAATATAATAAATTAGGAGTGTGATCATTGACATAAAATATAA
AGAACATATATAATACAGTATAAAGAATGAAATAGAGAAAGGAATGGATG
AAATTTATAAATATTTTTCCCAACATAAAATCATTCGAAACAGTATAATC
ATATAATCATATACTCCCTCTGTCCCTCTCATTTCTTTACAGTTACTATT
TTGGGATGTCCCTCTCATTTCTTTACATTACCATAAATAGTAAGTTTTTT
CCATCATTACACCCACCATCTCATATTTAACAATAAAAACTACTATTACA
CCTACTACTTTCCTCCACTATCTTAAATCTATTATTAAATATTGATGGGT
CCCGTGTCCCCCTCTAATGTAAACAATTGAGGGGGGCGGATGGAGTAATT
ATCAAACAGTTGAATATACAAATGTTTCAAAATAAATTAGTTTACAGAAA
TAATAAATATATTACGCCTTACATGGAGACTATCATTAACACTACTCTCA
TGCATATTTGTTGCACGAGTAGATTATATGTTTGTATCCCATCATAAATT
TATGTATGAATTCCAGATGGGTTTTTCAAAATCTTAAACAACGAAATGTA
CCCAACTGGCTATCTTATGTGCTCAACAATCATGTAGACATAAGCTACCT
TCTCTCCATTTGTGGTAGAGAAGCTCGTCTCCATTTGGGTTCTTCAATCC
ATGCCTCCCTAATCAAAAGCCCTGAGCATCATACCCATTTGCACATTTCC
AACTCTCTCCTCTTTATGTACTCCAAATGTGACAGATTAGATGATGCAGC
TAAGTTGTTCGATGAAATGCCTGTGAGAGATGCAGTTTCTTGGAATTCCA
TGATTTCAGGGTTTTTGGCTTGTGGGGAACTGGATACTGGATTTGGGTAT
TTTAGAAAGGTGTTTCAGTTGGGTGTTTGTTGTTTTGATCAAGCAACACT
GACCACCATATTGTCCAAATGCAGTGATCCTGATGTTGTTAGTGTTACTA
GGATGATACATGCAATTGTGTTTTTGTGTGGGTATGAATCGGGGATATCT
GTGGGGAATGCTTTGATAACGTCGTACTTTCATTGTGGGTGTTTGAATTC
TGGAAGACAGGTATTCAATGAGATGGGTGAGAAGAATGTTATTAGTTGGA
CTGCTGTGATTTCAGGCCTTGCAAAAAATCAGCTTTGTGAGGAAAGTTTG
AATTTGTTCGTGGATATGCGGATGGGATCAGTGGAGCCGAATTATTTGAC
ATATTTGAGCTCTCTGTTGGCTTGCTCCGGTTTGCAGGCACACAAGGAAG
GAAGTCAGATACATGGCATTGTTTGGAAGTTGGGTTTTCAATCAGATCTA
TGTATTGAGAGTGCGCTGATGGACATGTATTCTAAATGTGGATACATAGA
AGAGGCACTGCAAATATTTAATTCTGCTAAGATACTTGACGAGGTTTCCA
TGACTGTAATTCTTGTAGCATTTGCACAGAATGGTTATGAGGATCAAGCT
GTCCACATTTTTGTGAAAATGGTAAAGTCGGGTGTCAAGATTGACCCAAA
CATGGTGTCTGCGGTGCTTGGGGTATTTGGTATTGATACTTCATTGGCTC
TTGGTCAGCAAATCCACTCCTTAATTATAAAGAGAAACTTTGATGCTAAT
ATATTTGTTAGCAATGGCCTAATTAACATGTACTCTAAATGTGGTGACTT
AGAGGAGTCGATCAAAGTCTTTGATCAGATGCCTCAAAGAAACTCAATTA
CATGGAACTCAATGATAGCTGCTTTTGCTCGTCATGGCAATGGTTATGAA
GCGCTTAAATTTTACGAGGAAATGAGATTAGAAGGTGCAGAGCCAACAGA
CATTACCTTTCTGTCTCTTCTACACGTATGTAGTCATATCGGATTAGTAG
AGAAGGGCATGGAGTTTCTTGTATCGATGGAGAGTTTATATGGTTTGAGT
CCAAGAATGGAGCACTACGCCTGTGTTGTTGACATGTTAGGTAGAGCAGG
GCGTCTTATGGAAGCTAAGAGCTTTATTGAAAAATTACCTGTAAAACCAG
GTGTATTAGTTTGGCAAGCATTGCTCGGAGCATGTAGCTTTCATGGTGAA
CCAGAAATCGGAAAATATGCAGTCGATCAGTTGTCTCTGGCAGCACCCTG
TAGCCCAGTATCCTACACTTTACTTGCAAATATATATTCAACATGTGGGA
GATGGAAAGAGAGAGCAAAAACCATCAGAAAGATGAAAGAAATGGGGGCA
GCAAAAGAAACAGGACTTAGTTGGATTGAAATCAATAAGACAGTCCACAG
TTTTGTGGTTTATGATCAAATGCATCCCCAAAGTGATGACCTTTACAAAA
TTTTGTTAGAATTGTTTAAGCATATGAAAGATGAAGGCTATGTACCAGAT
AAAAGATTTATACTACATTACTTGCATGAAAAAGAAGGAGCAGAGCATTG
ACTACAATTTATTTTCTTTCGTTGTGTTAGGACCCCGTTTGGGTGTGA
Sequence Length:
16898
Sequence Checksum:
e5fdd5492feff0e63063225d6925fa2a
View location in JBrowse:
Cds:
>DCAR_001938cds ATGATGATGACGTCGAGGATGACGACGATCACAATGATTCACGCCGCTGC TCCTCCTCGCCGATTTCCCGGCCCAAGCTGCCCCCGCCGCCCATTTCTCA AAACCCTAAAACCCCAATTAAGAATCCTCACACTCACAAACTCCTCTGCG CACCCTCCTCCTCCCTCCATCTCTGCAAAACCCTCTTCTCAGTTGCGAAA AACTCGGAACACCGCCGTCGACGACGACAGCAAGCTCACCGCGCTCCGCT CCCTCTTCTCCACTCCTAGCAATGCTATTGACGCTTATATTATCCCTTCT CAAGATGCTCATCAGAGTGAATTTATTGCTGAGTGTTATATGAGGCGGGC ATATATATCGGGATTCACCGGCAGTGCTGGCACTGTGGTTGTCACAAAGG AACTGGCAGCTCTTTGGACTGATGGGAGATATTTTCTCCAGGCAGAGAAG CAGTTGAATTCTAGCTGGACTCTCATGCGAGCTGGTAATTCAGGGGTGCC GAGCACTAGTGAATGGCTTAATAATGTTCTGTCTCCAGGCAGCAGAATTG GCATAGATCCTTTCCTTTTCTCTTCCAATGCTGTAGAAGAACTTAGAGAG GCTATGACCAGTAATAGTCATGAGTTGGTATATTTGTACGAGTATAATCT CGTCGATAAGATTTGGAATGCAAGGCCAAAGCCTCCAAGTAATCCGATTA GAGTGCATGATCTTAAATATGCTGGAGTTGATGTGTCTTCAAAGCTGTCT AACCTGAGGTCTGAATTGAGTAATGCTGGCTCATCTGCAATTGTCCTCTC CATGCTCGATGAAATTGCATGGCTTTTAAACTTGAGAGGGAATGACATTC CACATTCACCTGTAATGTACGCGTACTTGATTGTGGAGGCTGATGCTGCA AAATTGTTTGTTGATAATTCTAAAGTTACTCGGGAAGTTGTGAGCTACTT GAAAAGTGCAGGTGTAGAGTTGAAAGCGTATGAATCAATTCTTTCTGAAA TAAAAAGTTTAGCAGCAAAAGGGGCACACCTTTGGTTGGACACATCATCT GTTAATGCGGCTATTGCATCCATATACGCAGCTGCCTGTGATGAATATAG TGGGGGAGTTGGGAGCAAAACCAAAGTCAGGAACAGCACTACTGGTCATT CTGGAGGGCCTCCGGCTGCAATTTATAGGCCTTCTCCGGTCTCACTTTTA AAGTCTCTTAAAAATTTTGCTGAATTGGAAGGGATGCGCAATTCTCATCT TAGGGATGCAGCTGCTCTAGCTCAGTTTTGGGACTGGTTAGAACAAGAAA TTCAAGAAGATATTGTATTGACAGAGGTAGCAGTTTCAGACAAACTTCTA GAATTTCGTTCCAAGCAAGCTGGCTTTGTTGGCACGAGCTTCGACACTAT AAGTGGTTCTGGTGCAAATGGCGCAATAATACATTATAAACCAGAACCAG ATAGCTGTGGCCTAGTAGATGCTAAAAAACTTTTTTTATTGGATAGTGGA GCACAATATGTTGATGGAACAACTGATATCACTCGAACAGTACATTTTGG TGAACCTTCCGCATGGCAAAAAGAATGTTTTACCCGGGTTTTACAGGGCC ATATAGCTCTGGATCAGGCTGTCTTTCCGGAAAACACCCCAGGCTTTGTA TTGGATGCTTTTGCTCGTTCTTCCCTTTGGAAAATCGGGCTTGATTATCG GCACGGTACTGGGCATGGTGTTGGAGCTGCTCTTAATGTTCATGAAGGTC CTCAAAGTATTAGTTATCGTTTTGGAAATACGACCCCGCTGATGAAAGGC ATGGTTGTTAGCAATGAACCTGGTTATTACGAGGATCATGCTTTCGGCAT CCGTATTGAGATCAATAGGATTAAGAGTCAGAATCTTCTTTATGTAAAAG AAGTGGACACTCCAAATCGCTTTGGAGGTATTGAATATATTGGTTTTGAA AAGCTCACATTTGTTCCGATACAGGCAAAAATGATAGACATGTCTTTGCT TTCTGTTACCGAGATCGATTGGCTCAATGAGTACCATTCTCAAGTTTGGG AAAAGGACCCCGTTTGGGTGTGA
Pep:
>DCAR_001938pep MMMTSRMTTITMIHAAAPPRRFPGPSCPRRPFLKTLKPQLRILTLTNSSA HPPPPSISAKPSSQLRKTRNTAVDDDSKLTALRSLFSTPSNAIDAYIIPS QDAHQSEFIAECYMRRAYISGFTGSAGTVVVTKELAALWTDGRYFLQAEK QLNSSWTLMRAGNSGVPSTSEWLNNVLSPGSRIGIDPFLFSSNAVEELRE AMTSNSHELVYLYEYNLVDKIWNARPKPPSNPIRVHDLKYAGVDVSSKLS NLRSELSNAGSSAIVLSMLDEIAWLLNLRGNDIPHSPVMYAYLIVEADAA KLFVDNSKVTREVVSYLKSAGVELKAYESILSEIKSLAAKGAHLWLDTSS VNAAIASIYAAACDEYSGGVGSKTKVRNSTTGHSGGPPAAIYRPSPVSLL KSLKNFAELEGMRNSHLRDAAALAQFWDWLEQEIQEDIVLTEVAVSDKLL EFRSKQAGFVGTSFDTISGSGANGAIIHYKPEPDSCGLVDAKKLFLLDSG AQYVDGTTDITRTVHFGEPSAWQKECFTRVLQGHIALDQAVFPENTPGFV LDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISYRFGNTTPLMKG MVVSNEPGYYEDHAFGIRIEINRIKSQNLLYVKEVDTPNRFGGIEYIGFE KLTFVPIQAKMIDMSLLSVTEIDWLNEYHSQVWEKDPVWV*