DCAR_016603

Resource Type: 
Gene
Name: 
DCAR_016603
Identifier: 
DCAR_016603.gene
Locus Tag: 
DCAR_016603
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 3 relationships.
Relationships
The mRNA, DCAR_016603, is a part of gene, DCAR_016603.
The genetic_marker, MK008768 85036.16483, is located in gene, DCAR_016603.
The genetic_marker, MK005118 K2562, is located in gene, DCAR_016603.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_016603DCAR_016603.mRNAmRNADCARv2_Chr5:5228846..5240078
Sequence: 
ACAATAAAAAATCCCAAAAAAGACAGAAAGAAAGTCTTGTTTGACCAGCA
CAAGAGCCTCCTCTCCTTCTTCCCCTCTTCCTCTTATCTGCTCCCACCTT
TCCTGCAAATCAATGTCATTCTTATTCAATTTTAACAACCCCTTTATATA
CACGCCCCCTTTCATTCATACCATGATCCCTTGATCCCTTAACACACTAA
ACAAAACAAATCATGGGTTCTTGTTTCTCCACCAAGAAAATTACTGGGTC
AAGCAGTAACACAACAAACACAAACACCCATGTCAAAAAGCCTGCGTCTT
CAGCAACAAGCACAAGCGCCACCACTAAATTGACTTATAGAAACAATAAT
AATAAGAATAAGAATAAGAATGATAATGATCACAGAAATCAGCAGCTGAT
TAGGCATAGAGATAAGGCCAGTTCCAGGAAGCAGAATGGGGTGATCCCGT
GTGGGAAGAGGACGGATTTTGGGTATGATAAGGATTTTGATTTGAGGTAT
AGTATTGGGAAATTGTTGGGCCATGGCCAATTTGGGTATACTTATGTGGC
GGTGGATAGGAGTAATGGCGATCGTGTTGCGGTCAAGAAAATCGATAAGA
ATAAGGTACTTTTCCGGGTGTTTGTTGTTGATTTGGAATTGGTTTTGTGA
TTTGAATTGGTTTGTTTTGTACTTTGTGGTGTTTGTAATGTGCAAATTTT
GTCGAGAATTCGTAGGTGGATTAATGAACTTGTTTGTGTTGAAAAGTATT
TTCTTTTTTGATATTACTCATCAGCTAGATGATATAATTATTGTTCCATA
CACTCTTATCTTGTAGTGAAGTTTAGTTTTCCTCCGGCAATTTCTGCAAT
GTCGGAGTATGGTAAACTATGTAGTGTTTAGGTATACCTAACTATTGGGA
CTTTTGGCTGGAGCTTATGAGGTACAGGGTGGTGCAGACTAATTCATTAA
TTCCGCAGTCAATTTTGTCGGCGCCTGTGGAACAATTTTAAAATCTCTCT
TTTTATAAATTAACTTCTCATCAATTGATCTTAATTGACTATCTTGACCA
TTTATATTCCGTCATCAATTTTGCCATTGCATTGATTTGATTCTGGGACA
TGTTTCACCACTGAAGTGTCTTTATTGTGGTCAGTCATGCTAGATTTACT
TTGCTACTTGCTTGCTTTCGAATTGGAGTGATATTAAGATCTTGGGGAGG
GGGGGGGGGGGGGGTACTAGATTGGTTTAATGTGTGAAAGTTAATTAAAG
TTTAACTTGATGGTTGGTGTCCGATATGGTCCTTCAGAGGCATTTGCTTC
TTACTTTAATTTGTCGCAAACAATTGTGTAATTTTGGCAGATGATCCTTC
CTATAGCTGTTGAGGATGTCAAGCGAGAAGTCAGGATTTTAAAGGCCTTA
AGTGGCCATGAGAATGTGGTTCAGTTCTATAATGCCTTTGAAGATGACTC
ATATGTTTATATAGCTATGGAGTAAGTATTGTTATGCTTGCAAAATCTAG
AAAGTTATCGTCTTTTTGTGATTGTAATTTCTGACAGTCATGTTTTTATA
AGTTGATCATTTGTCTTCGGCATCTAACGTGTAGTCCCAAATATTACTTC
TTAAGGTTATGCGAGGGTGGTGAATTGCTGGATAGAATTTTAGCCAAGTA
AGTACCTTCTAAACAAGTTACTTTCTGATAATGATTAACTTAAGCATTAT
TACAAGACTTACTGTGACTTTGTGTGTACAGAAAATCCAGCCGTTATACA
GAAAAGGATGCAGCTAGAGTTGTAAGACAGATGCTAAAAGTTGCAGCTGA
GTGTCACTTGCATGGTTTGGTGCACCGTGATATGAAACCAGAAGTATGCC
TCAATTAGATCAGTAATGTTTGATTTAATTTAGCTATACTTTTTTCCATT
CTTGCTCTTTAATGGTGTTTCGTCTGATTATTCAGAAAAAGTGTTTCTCT
TGTAGAATTTCCTTTTCAAGTCACCAAAAGATGACTCAGCATTGAAGGCT
ACTGATTTTGGTCTCTCAGATTTTATAAGACCAGGTATACAAGCTTTTAT
TTTAAGTTACTTCTTCCCCTACTTTATTGATGAAAAAGCTAATATCTTTA
ATTAGAGCTCTAATTCCGGAATGGATGATCTTTCCTTGACATATTTAGTA
TGTAAAGATAGGACATTCCTGATGTATCTCGCCTATACCTTATAAATAAT
TCTTTATGCGCATTTTTAATCTAGTAAGTGCAACATGTCTGAGATTATTG
TACTTCTATTGCCAAAATCTTTTATGCTCCCTCCATCTCAATTTCATATA
TAAAGTCCACTTCTCTACTCTTTATCTATGAATCAGTAGACAATGTCTTT
GTGCGGAAGGGATTAATAAATAAAATTTTCTTTGGTATTGTGAACTTTGC
AGCTAAAACATAAATTACTATCCCGGAGTAGTGTGCATAGGCTGAAATTG
ATCACGTATGGAAGTCAATAATTAAATCTATAAAGCGAAGATGAAAAAAT
TACAAATCAATCTATATCATATACTAAAGTATAACCTCTACTTCTTTGTA
ATAATGAACTTTACCATTTGTCAAGTACCTTTGCACGTGCACAATATACT
GAAGTATAACCTCTACTTCTTTGTAATAATAAACTTTACCATTTGTCAAG
TACCCTAGCACGTGCACACGCACACACACCGTGAATTCGAGCCCTATTTC
AGTATCCAGCCTACCCCTAACCTAACTCAACCCTGAACCTGAAATTGAAA
AATTATTATTCCATGTATTAGCAAGAATACTACTCCCATCCTCTTTCCTG
GCTAGTAGTCCAGTTCAGGAGTGTGTGACGGTGATGGCATAATTTTATCT
AGGAGTTCAGAAAAAAGTTAACACCCGAAGTTGTCCACCCACCTATGATG
ATTATTAACCTACTATAAGCAGACTTTTGGTGAACTATCTCTCATTTGCA
AGAGGCTGCCAATAGATTATACGCTTGAAATTCTATGATTTTGCTGGTAT
CTATTTTGGTTTGATCATGGCAATAGATAGGTTGGACTTCCTGGTTAATA
TTAGTATTGGGCAGCGTAAGAAGTCTGATCTTCCACATATATCAATCTGA
GGCTGTGAGTTGATTGGTATACAGCCCTAATCACAAATGCATATTCTAGG
GGTAATAAGAGGGCAAATTTTTCATCAAAGCAGGTGGCTTGATGTTAACA
CAAGAGTGAGAAGCTATTTACTTTTTAAATTGTCTTGCATCACAACAGTT
GCTTTAATATATTTGCCATCATAATAGGCCTAGGCCCTGGAATGTTTATC
TGATGGGGATCTAGACGAATCACCTTGCTGTCTCGAATTAAATCGCATGG
AAGAATTAACTTCCTAACTGCCCAACACTAATTTTGAGAAGTCTTGCCTC
AGTTACCATGATCAGACCAAACGGTACCTATGAAATCATAGAACTTCAAG
CTAATAACCCTCTATCATAGACTCCTGCTGAACAACCATCATTTCCGACA
GTACTGCTCGAGTCCCCCTTTTCAGGACGAATTGAGATAACAACTGTTAT
TGGTTGGTAGACAACTTTGGTCATTAGCTTCACATCTATATTCTCCAAAA
TAAGATTCTGTCACGGTGGCATACGCTCTTGAACTGGACTGCTAGATGGA
AGGAGAGTACAAGGAGAATTCTTGCTGATAAATGAAATGGTAATTGTTCG
ATATCAAGTTTGGGCTTGATAGGGATGGGCTTATATTCTTCTGGTTTAGG
TTCATGGTCTAGTGCTGTGTAAGCTGAACTTACCCCCTTCTACTTCTGGG
CACCTTGAACTTATCGTCTCTCAACTAAAGCAAGCCAAAGGCACAGCTCA
TTTTTTTCCCACTTCCCCGCCACAACTACCAGCTGATTTGAAACTTAAAA
TAGAGCCAGATTTTGTGAGGCATGGAAGAAAGCAGAATTACTAAGAGACA
GAGGTGTTGGAAGGACCTGCCCTCTTTTGAAGCTATGTGGGAGAAGTTTG
TTACAATCCAAAGTTTCCTGATTTTGTCGAGGTGAAGTGTTGGCGGGGCA
ATGATAAAGCCCTGATCAAGTAGACATAGACTATGCTTTATACCAGAGAT
GTCTAGGGTAATTAATTGATATTATCACATCAATTAGAAATATTAATATT
TGGTAAGTATGAAATCTAGTAGAATTAAATTGTCATGGGGTGGAGTGTGT
GGGGGAAAAGAGAAAATTGTACTGAGCTCTTGCTCTAGGGATAGAAACAG
GTCTCTCGAATACCTGGATATCATGTTACTAGGACACAGTTACAGGGTGT
CCTGAAGCTCTAAGAAATGGGAAATGGGGAACTTGTCTAATTTTTGGGCA
CCAAACAAGGACACGACATAGCCAACTATATAAATATATTAAAATTTTAG
TTTATACAAATCAAATTAGTGACGATATTGTGAATGGCTTTGCAATTTAG
GCATTTTTTCCTGCTCTTATTCCTTTTTCTTGTTTTCCCTTCGTCCTTTT
CTCATCCTTTATTCTTTTTTCTTTTTTTGTAAGGCTCATCCTTTATTCTT
TGTGTACAGTTAGTTGTCTTTTACTATTGCTCGAATATTCATATTTCTGC
TATTGCAATTAAAAAAAGCACACACAATTTTTTTTAATATTTTTTTCTCT
CTTTGTTATGAAATATATCGCGGGGTGTATCAAATAGCTTAAGCACAAGG
TCAGTAGGTCACACATTTTGCTTCGGGAATTGAATTGATAAAGGCAGCAG
AAAGTCGAACAATCCATCCACTTGTCACATTGTTGAACTAGCAACCCAGA
TAATCTGAGTTCGCAATCAACTCTCTGTGAATACAACATAGGCTAATATG
TATTCCTAATCTCATTGCATCACATTTTGCCAAACCAATTTTGAGTAACC
CATGAATATTCTAGCCAACTATCTGTTCAATCTTATTTATTGTCATTGAA
AACCTATGCAGGAAAGAAGTTTCAAGATATAGTTGGTAGTGCATATTATG
TTGCTCCAGAAGTTTTGAAACGAAAATCGGGTCCTGAATCAGATGTGTGG
AGTATTGGTGTAATTACCTACATTTTACTTTGCGGACGGCGTCCTTTCTG
GGATAAAACAGAGGATGGCATCTTCAAAGAGGTGCAACACTTATTATTTG
CTTTCTAAATAAAATAACTTTATGTAAGATAGGGTAGGACAACTTCTATA
ATTTTGTTCCGATGTTGGATATATAAGCTGTACCAATCAATATTTCTGTC
TCTGATAATGGTAACTAATACTAGTCTCTGTGTTTTAGTTTCTTAGCTAC
GGAATTATGCAAAGTTTGGAGTCGAGTAGTTGTAAAAAACCTATCTTTCC
TTAGTATAAAATTTGTTCAAATCACCTTTAGTGGTCTAAATGAGAACGAT
AATTTTGACATAATAAGGAGATACACTCGTTATGCTGCTGAAATTAGGGA
GTTATTATAGTATAATTATTATGCCATCGATGTGATCTGTAACTGCATGC
ATAGTTAGCCATTGGTTGTTTCGCTCATGTCGTGGGTATCTACGCAATAG
CATTTTATGTGACCGGCATATGGTGCAAGTAACAAAAATGAAAAAAAAAA
TTAGCGACGTTAATAGCAAGTGAATCAAGGAGAACTCTAAGAAGCCTTCT
CAATTTATTTAGCTCTCTTTTACAGTTTCTTGTGCTATGTTACTGTTTTT
CTTCATCCCTTTTTAACTATAGATTTTTTAATCCATACTGCTGTATTAAT
ATTGCTCATAGAGTCGAGTTCTTTCACTTTGTTGCCATTTTGTCTAAATA
AGAATTTTTTAATGTCCAACTTGATAGATTTTCATTACTATGGTTTTGGA
GACGGCCATCCCTGCTGGTTCAACTGGGACCTGGTAAGCAGGCTGGTCTG
ATTCAACATATTTCAATCCATATCATGAACAGTCTTGGTATTAACCAGCC
AGTTCAGTGATAGTTTGACTTCATTAGCACATAAATTCTTACATTTTAAA
AGGTTATAAAAGGTAATTATGAACCTTAGACCTGTTATCTAATTGGAGAG
GCACTAACCAGATGAGATTTTAGCATTTGTGTGTACAAGGTTATACACAA
TATATATCATACTCAGAACACAACTTTGAACAAAATTAGTATCTATTATA
TAGATTTCAGCTTACACACTACAATAAAAATGTGAATACGATTTGATCAA
TTAGACAACCATGTACTATATGAACTATTAAACCAGGGAACCACTCCTTT
TGTCAAGTTGGTCATAAATACCATCCTTATTCCATGTCTAGCCACATTCC
AGTAGTATTGTCAAAGTAACCTTTGGATTTGCTTATGTATTTGATATTTG
AGACTTTTTCTGAAGTTCACAGGACTTCTCCAAATGTGCGTAGATCCTTA
TAGTTTTAAAAATTTGTTTCTAAATGACATTCTTCTGGAAACAAGCCTGA
TTCTTATGTATGTATTTTATACTGATCCATAACTAATTTTGTCCAGTCTA
ATGCTATTCCACTTTCTATATTTCGGTGTATATATTGATTATATGCTCTG
CAGGTTTTAAGAAACAAGCCCGATTTTCGTCGAAAGCCATGGCCAACCAT
AAGCAATGGAGCAAAAGATTTTGTAAAGAAATTGCTCGTAAAGGAACCTC
GGGCAAGATATACTGCAGCTCAAGCTCTATGTAAGATTTTACTTGTCTTT
TTGTGCTGCCAGCACACTTAGAGAATTAAAAATGTGATTCCCAGTTTGGC
ATCATAGCTATTTTACCACATCTATGGATCATGTGATTTATGCTCTTTAC
TGAAAACTCACAGTAAAAAATCAATCTTTTCATTATATGTTCAGTCTAGT
CGAAAACATCTTTAGTAAAGATATATATGTAATCAAGTTGTATTAAATTT
CAACATTAAAGATAAGTTCTGATGCTAATGTATGCATGCATGAAACTTTT
GTTTGTATACCTAAATCATTCACTATGGGGATATGTAAGCTCTAGTGAAG
CTCTACTTTTTTGTTTCAACATTTTGTTCCAGCATCTTGAAATATTCGAT
TTTGCCAGCACACCCGTGGGTAAGAGAAGGGGGCAATGCCTTGGAGATTC
CTCTGGATATATCTGTCCTATACAACATGAGGCAATTTGTGAAGTACAGC
CGCTTGAAGCAATTTGCACTTCGGGTCTGTTTCCCTCCTTTGTTTGATAG
CAAATTACAAATGATTCTGATTAGTGTGTTTTTTAGATCGCAACTGAGAG
ATGAGTTTGCTATGTCACAGGCATTGGCTAGTACTCTTGATGAAGAGGAG
CTTGCTGATCTCAGGGATCAGTTTCATGCAATTGATGTGGATAAGAATGG
TGCAATCAGTCTTGAAGAAATGAGACAGGTTTGTTTTCTTCCGTGCTTTA
ATTGTGAAAAGTTAGTTTTGCTGTAAATTATGTATGTTTAGGTCGAATTT
CAGGTTATGATACATTGCCATATGTAAAGATTTTCTGTTTGCTGTCTGAA
GATGCACCCTGAAATGTTCTTATGTGTTTATTTAATTGCAGGCACTTGCT
AAAGATATTCCTTGGAAAGTGAAAGAATCACGTGTCCTGGAAATTCTTCA
AGCGGTATGTTTACGAGTTTATCCTTTCGAAACAGATGATTTGTGGATTA
AAAATAGTGGGCATATTTTACTATCTATCATTCTCAAGTATAAAATGTAT
ATTGTCCATTTTCAATTCATGCGGATGTTTTTCTTGTTTCTTTCTATTTA
ATAAAAATTTATATCTAGGATTCCTTGTGCGAGTGACCTATAAGAATAAG
GAAGGAGTGCTTTTTGTTAAAATTTGGAGTAAAATGCACTTCACATCCTC
AAACTTATCGCCATTTGGACTTTGTTACACTACCTTTGACTTTACATATT
TTTGCAATCTTGACCTCAAAAACTCGGGCCATTACAGATTGTCTTGCAAC
ATTTTCATTAATAAGCAGTTTAATAGTCAAATTTGAGTAAAGAAAATTCG
GAACCATAATACTTGCAACAGGCATCTTTTTCAATGGAATAAAATGCAGG
ATTTGTGTATCTTTCGAAATTAATGCCTTTACCCAAGCATGCAAGCATCA
CTCAAAGAAAACATGCATCCCAAATTCAAAATTATTTGAAAACCTATGTT
ACCCGGACTCTCCATTTTTGTGCCTATACCCGTGTCCACCGGACATGACA
TGGGTGTGGGTATGGGATCTGTGTCGGATCCTTCTTATTACAACCGGACA
CCTCACCTTGTAACATCCCAGGTCAAAATGAAAACTTAGGTCTTGTTTCA
ACTTGTTTAAAGAGATCAAGATCCATGAATGACTTGTTTCTATGTTGTTC
TATTGATTTTATGCTTCAATTTTCAGCGTATGTGATTTATGTGCAGTAGA
CACTATTTTTATGAATGTACAATAGACTAGTCTATATAAAGTTTTACTTG
CATGGAGCTTAAGTGCCAAGTCCCCGTACCCGAGTCTAATTCCGGATCCA
TGTCCACGAATCCTAATTATCCTAAAACTACGAATCTGACTCTTGGATCT
GTACCCGTGTCCGATACCCATACCCGTGTCCGGGTAACTTAGTTGAAGAC
TATAGAAATATAGAAATGGGATTGCATGAACGAATGGCATAAGCATTTAC
AGCAGCAAAAGGCTCTTCACTGAGTCTATCCTTTCACTGAATTCCTGCTA
AATCTTCCTTACACCCGTTATGATTCTTTTCTACATACAGTATGGATTTG
AAGTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGGACTGTTTG
GAGGGGGAGGGGGGGGGAGCCACATATTTAGGGGTCACTGGGAATGCAGA
GCATTATTCTTTGAGGACTTCTATCTTTACACCAAGATCAAAAAATTGGA
AAAGGTATTGAAGAACGACTCTGAAAACTGTATTTTCTGGTTTTGTCCCA
CATTCTATAAACAAGAGTCAGATAGTTATGCCAGCCATTACAGCCACTAG
TCTAAACCTGGTGTTGAACTTGGTCTCCTCCATCTATTCTGCAGGATTTT
TCTTGGTTTTGCCATACTTAAAACCATTCTTGAACTTCCGTAACACTAAC
ATATACAAATATAAATTTTCCAACTGTCATATGGCTTGATATTATTTGAT
GTTTGTTGGGATTATTTGGGTTGATGCCAATGTCATTGAATGCTATGCGC
ACATTCGGTTGTGTTATACGACATTACTGGGAGCTGAACTAAAATTTTTA
CCATCTACAGACGATGCTTGTCAACTCTATATGTCTTCTTTTTTAGGGGT
GGGTGCAAAGTAACTGAAATTTGATAATAACTTTCATGTATTCTTTTCCA
AAATGTGAAATTGTATTGGAGGTCTTACTTTTTTACTATACATTTTCTTT
GGACAAATGTACTTGAGAAAGAACTATGTGATTCCAGCAGTTCTACAACT
CGCAATTCATTGTTTGCATTTGAAACCATCAATATCTTTTTATCCCCTCC
CCCCCTGCCAGAACCACTGATTCACTTCATCTCACCTCTAATGTATCTCT
CTAATTTTTAGAGCTCATATATATAGAATTTTTCTTTGGGCAGATGGACA
GCAACACTGATGGCCTAGTTGATTTTCATGAGTTCGTTGCAGCCACTCTT
CATGTCCATCAACTGGAGGAACATAATTCAGAAAAGTGGCAACAAATATC
ACATGCTGCTTTCGAAAAGTTTGATGTTGATAAAGATGGGTATATAACTG
CTGAAGAGCTTAAGATGGTGAGTTTGTTATGCTGTATTCTTGCACGGATA
ACTTTTTTTATTTGTTTCTATAAAGTCACTACTTGTTAAGACTTGTGTGT
TTCATAGTCTAACATCTTTCTCAGCTACACCAAGTTTGTTTTTGTTGTGG
AATTCTGACTTTATTAATTATAATTGGAAGCCAGTGTGCTGAGTGTCCAT
GGCAATAATATTTCACATTCAGCCAACGATAGTGTGTTCCCAAGTTGTAC
ATTCTAAATTACTGAGAGATAATGAAAGAAAAGAAAAGTAGTGGAGGGAA
GAGGCAGGGGGAGCTAAATGTTTTCTTTCTCTCGTATCTCCGAATTTTAG
AAATTTGGGATAGGGAAGGAATCACAGAATTGTTTATTTTAAAGGAAAAA
GGCATTTGTAGAATTATAAGAAGATTTTGAGCTTTATTTCTTGCAATTTC
TCAAAGTCTTTTATAGATTATAAGTTTCATTTGGTCCAACTTGTAAGAAC
AGGATTTATCCTTGTTCCCTATATAAAAACTTGGAAGCATGTGCGATGGA
AGTTTTCATAAAATCTCTTGGATCTCTCAAATTAATACTCTGGATCAACA
CTAAAAGTGTCCAATAGATACCAGGTGGAACTTGGGAATATTGAGAAATA
GCTGTTATCCAAAATTAGGCCAAGTAAACTGCAGAATTTTACTAATAACC
TACAATTTGGTCAAGTACAGCCATGATACCATAGCTAGGAGCCGAGATGT
AGCAATGCACTAGAGTAGTTTGTTCAAAGTGTCATTTCAGCTGCACTGCT
ATTGAATTCACATGTTTATTTATTTTAATTTGCTAGACAAATGCTAGGCT
GCTGCATTCATTATTAAGTATGACGGGGGTGGTCTTGAAGGTTCGTAAGC
AAGTGATTGCTGACGGACCCTCATTGTAGTTTTTGTGTACTATTTGTAAG
GCTTCCCTTGGCTCCATCACATAGACTCTCCATTTTGGTCCTCCTACCCG
TGTCCACCGCACATGACATGGGTGTGGGCATCAGATCTGAGTCGACCGTC
ATTATAACTGGACACTTCTCCTTACAGCATACCAGTTGAAAAGACTCACA
AAGAGCAAGGTCCATGGATGAATTGTTTCCATGTTCTTTTTATTATATGC
TGCTATTTAACACACATACTTAAGTGTATCTGATTTATATAACATATTAT
GCATAGTAGACACGTTTTTTTGAATGTTCAATGGATCAGCCTGTATAAAG
TTTTACTAGCTCACATTTTGAGTCTCCATAACATTGTACAAATTCAGATC
CATATCGAAGAATCATAAATATTTAAAACTTGGTATATGACTGACACTTG
GTACCCATGCCCGGGTAACATAGGTTGCACTGAGGTAAAATGAATCTTGT
AGCTTGAATCAAGATGTTGCATGGCTCTGTACAGACATGCTTTAGTTTTA
GCCCAAATTATAAAATATCTGTTATGTATGATATATATGATATCTCAGGA
ATTTACAAATTTTACTTTTTGATTTGTAGCATACGGGATTAAGAGGATCC
ATAGACCCACTTTTAGAGGAAGCTGATATCGACAAAGATGGGAAAATAAG
TTTGTCCGAGTTTCGGAAGCTTCTTAGAACTGCAAGCATGGGTACGAGAA
ATGTAAATAGTCCTGCTGCCCATCGAGGATCTCGGAGACAATAGAACATA
TTCAGGTACCTGAAATCTATGACAGAATGAGATTTTAGAGTTCTTTTTTT
AAGAAATTATTCAGTGAAAAGTGTGTAAACGTATAGG
Sequence Length: 
11537
Sequence Checksum: 
083f58c1b985382cdbf6a5cc57c1eb44
View location in JBrowse: 
Cds: 
>DCAR_016603cds ATGGGTTCTTGTTTCTCCACCAAGAAAATTACTGGGTCAAGCAGTAACAC AACAAACACAAACACCCATGTCAAAAAGCCTGCGTCTTCAGCAACAAGCA CAAGCGCCACCACTAAATTGACTTATAGAAACAATAATAATAAGAATAAG AATAAGAATGATAATGATCACAGAAATCAGCAGCTGATTAGGCATAGAGA TAAGGCCAGTTCCAGGAAGCAGAATGGGGTGATCCCGTGTGGGAAGAGGA CGGATTTTGGGTATGATAAGGATTTTGATTTGAGGTATAGTATTGGGAAA TTGTTGGGCCATGGCCAATTTGGGTATACTTATGTGGCGGTGGATAGGAG TAATGGCGATCGTGTTGCGGTCAAGAAAATCGATAAGAATAAGATGATCC TTCCTATAGCTGTTGAGGATGTCAAGCGAGAAGTCAGGATTTTAAAGGCC TTAAGTGGCCATGAGAATGTGGTTCAGTTCTATAATGCCTTTGAAGATGA CTCATATGTTTATATAGCTATGGAGTTATGCGAGGGTGGTGAATTGCTGG ATAGAATTTTAGCCAAAAAATCCAGCCGTTATACAGAAAAGGATGCAGCT AGAGTTGTAAGACAGATGCTAAAAGTTGCAGCTGAGTGTCACTTGCATGG TTTGGTGCACCGTGATATGAAACCAGAAAATTTCCTTTTCAAGTCACCAA AAGATGACTCAGCATTGAAGGCTACTGATTTTGGTCTCTCAGATTTTATA AGACCAGGAAAGAAGTTTCAAGATATAGTTGGTAGTGCATATTATGTTGC TCCAGAAGTTTTGAAACGAAAATCGGGTCCTGAATCAGATGTGTGGAGTA TTGGTGTAATTACCTACATTTTACTTTGCGGACGGCGTCCTTTCTGGGAT AAAACAGAGGATGGCATCTTCAAAGAGGTTTTAAGAAACAAGCCCGATTT TCGTCGAAAGCCATGGCCAACCATAAGCAATGGAGCAAAAGATTTTGTAA AGAAATTGCTCGTAAAGGAACCTCGGGCAAGATATACTGCAGCTCAAGCT CTATCACACCCGTGGGTAAGAGAAGGGGGCAATGCCTTGGAGATTCCTCT GGATATATCTGTCCTATACAACATGAGGCAATTTGTGAAGTACAGCCGCT TGAAGCAATTTGCACTTCGGGCATTGGCTAGTACTCTTGATGAAGAGGAG CTTGCTGATCTCAGGGATCAGTTTCATGCAATTGATGTGGATAAGAATGG TGCAATCAGTCTTGAAGAAATGAGACAGGCACTTGCTAAAGATATTCCTT GGAAAGTGAAAGAATCACGTGTCCTGGAAATTCTTCAAGCGATGGACAGC AACACTGATGGCCTAGTTGATTTTCATGAGTTCGTTGCAGCCACTCTTCA TGTCCATCAACTGGAGGAACATAATTCAGAAAAGTGGCAACAAATATCAC ATGCTGCTTTCGAAAAGTTTGATGTTGATAAAGATGGGTATATAACTGCT GAAGAGCTTAAGATGCATACGGGATTAAGAGGATCCATAGACCCACTTTT AGAGGAAGCTGATATCGACAAAGATGGGAAAATAAGTTTGTCCGAGTTTC GGAAGCTTCTTAGAACTGCAAGCATGGGTACGAGAAATGTAAATAGTCCT GCTGCCCATCGAGGATCTCGGAGACAATAG
Pep: 
>DCAR_016603pep MGSCFSTKKITGSSSNTTNTNTHVKKPASSATSTSATTKLTYRNNNNKNK NKNDNDHRNQQLIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGK LLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKA LSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAA RVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFI RPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWD KTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQA LSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEE LADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDS NTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITA EELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSP AAHRGSRRQ*