DCAR_017477 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_017477

Identifier:

DCAR_017477.gene

Locus Tag:

DCAR_017477

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_017477, is a part of gene, DCAR_017477.
The genetic_marker, MK004814 K2258, is located in gene, DCAR_017477.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_017477	DCAR_017477.mRNA	mRNA	DCARv2_Chr5:19732117..19742702

Sequence:

ATGTTTGATTACATCGATAGGCTTTTCGTGATGGTGCGTCCTCGAAAGCT
GCTTTACATGGCTATCGGTGGGTCAAATTTTGAAATTATTTTAAAATTTA
ATTGATTTGAATTTTTTGCTGTGTTCTTGTTTTTGTCTTTCTTCTTGTGA
TAATATTTTGGCACCTTTTCTAGATGGTGTTGCCCCAAGGGCAAAAATGA
ACCAGCAACGATCTAGGCGGTTTAGAGCAGCCAAAGATGCAGCAGATGCG
GTGAATACCTCTTGTACAAAAATGCATACACTGTGCAGCTAAAAACTTCT
AGAGCCAGTTTGTGACTCCCTTTTTTGTAGGCAGCTGAAGAGGAAAGGTT
GCGTGAGGAATTTGAGAAGGCAGGCAGAAAGCTTCCCCCAAAACAGGAGT
CTCAAGTCTGTGATTCTAATGTTATAACTCCTGGAACTGAGTTTATGGCA
GTTTTGTCAGTTGCTCTACAGTATTATATCCATCTTAGAATTAACAATGA
CCCTGGATGGAAATCTGTGAAGGTATTACACCCCATAAAATATAAATCTG
GTGTATGGATTTCCTGTTAAGATTATATATGCTTCCAGTTGTGAAGAATT
TTTTATTGGTTTTAAGCAGTAGTGCTCTGTATTATTAGTTATTCCTCTAT
TATTTTGAAGGTAATACTTTCTGATGCAAATGTTCCTGGTGAAGGGGAAC
ACAAAATTATGTCCTACATTCGACTGCAGAGAAACCTTCCTGGTTTTGAT
CCAAATACACGGCACTGCCTGTATGGTTTGGTAAGCCTTCTGATTTGAGT
AGTGGTGGACTGCTATCTAGTGAATATCTTTTTCTAAACATGTGATGATG
CTGATGGTGCATTACAGGATGCTGATCTCATCATGCTGGCTTTGGCTACC
CATGAGATTCATTTTTCAATTCTCAGGGAGGTTAGTATCTGACTGATTGA
CTGTTGTACCAATATCAGTCCAGACTTTTGTGCATATCACATTGCAGTTG
AATACAGAGACGATATGAAAATATTTTGTACTCTTGAACTTCTTTCTAAT
ATATATATGTGTGTGTGTTTATATTTATTTTTTACTAGGTCAGAGAAAGG
GTCTTTTTCATATTTTGTTGGTGAATATATCTCGGACAAACCCATGGTTT
TGTTTAGATTCATTTCCAGGACACATTATGTGGGGCTTTTGTTCTTCAGT
TCCAGACCTAATCAATCTGTTGGCCCAAATTTATTTGTAGGTTGTATTCA
CTCCGGGACAGCAAAACAAGTGTTTTCTTTGCGGTCAAATGGGCCACATG
GCCGCAGAATGTGAAGGAAAGGCCAAAAGGAAGAATGGGGAGTTTGACGA
GAAATGTGAAATTGTTCCCAAAAAACCATACCAGGTTGGTAGAGTGAAAC
TCATATATTAGTATTAGGATGTAGCATGCCTTCACGCTCTTAAGTTGTGT
GCGCTGTATATTTTTGCAGTTTCTCCACATTTGGACTCTTAGGGAGTACT
TGGAGCTTGAGATGAGGATTCCTAATATTCCTTTCACAATTGATTTTGAG
CGCATCGTTGATGATTTCATCTTCATGTGTTTCTTTGTGGGCAATGATTT
TTTACCACATATGCCTACATTGGAGATCCGTGAGGTATGTTCGATTGTTT
CTTCTTCTTAATAGTTCTTAGCTGAACTCTCTAAATTAAACTGAATTAAT
CCGTTCTCACAAACAAAAAGGAATAGTTTGAAAAATTCGTTTGTCTATGA
CCTTATGAGTCTGCTAACTTATTTGCTAATTTTCATTCCCTTATATGCAA
CCTTCAAATTTCCCATCAGTTCCTATTTGTTGGTGAGTATTTTCTCTGTG
ATGATAATTAGATTAGTGTCATGGGAGAGGAGGTAGTTGGATGGTGTTGC
CGTGTTGGCTGGAAGCAAAAAGAAATTAAAAAGAAATTAAACACCCTGAA
GGAAATATAGAATTAGAAACCCTCATATATATTTTATGTGGTCTTGAAGT
GATGAAGCTAGCAAGTAATAAGGTATTTCAGGCATGTAACGTGATAATTA
TGAAGAGAAACTAGTTATCCTGAAATAATTTATTTTGGCCAAGGACACCA
CATTTATTTTGTTGGTCATCGTTTGAGATGATTACTAAGACATTTATGGA
TTATAAACCTTTTCTGATATTGAAAGGTGAACTGTTTTTAATATCTAGGT
TTAGGATAATGTGAGGAGACAATTTCCAGCATGTATGTTAGCTTGTTATT
TACATATCCTTTGAGGTTTTTTAGTTAAGTAGCTAAGTAGCTACCATCTA
GGTTAGTGGTTTACGTGTTTATTTTATCTAATAACCTTCATGGTGCTATT
AATATCTTCCTTTTGTCCCCTAATTTCTTTTTGCTGCTATCTAGGGTGCA
ATCAATCTGCTTTTGGCTGTTTACAAGAAGGAATTTCGAGCTTTAGGTGG
TTATCTGACCGATGGAAGCAAGGTAAGTAATATGGTGATTTTGGTCAGAA
CTCTCTGAAGTAGGCTCTTCTGTTCAACTTTTCTGGTACGATTGATACTA
TGAACATATGAAAGCGTCCTCAATAATATTTTTTTTTTCATTGTTAGCCA
AACTTGAGCAGGGTAGAGCATTTCATTCAAGCTGTGGGATCATACGAGGA
CAAGATTTTTAGTAAAAGAGCTCGGTTGCATCAGGTTTGTAACAACTTTT
TTGTTTAGTAGATGTTACCATCTGCTATTAATATAAGGAATTTTAGTATA
TCATCTTTCTACTTGAAAAGCATCAAGGTCTAAGCTTTTAATATTCTGAT
GTATCTGAAAAACATTTATTCTGTAGTCTCCACAGCAATTTGCATATCGA
TATTGGATTTAAGTACACATAGTGTACCTGCAGTTCATGTGTCGGACCAC
TTGCTATATTTCACTTCAAAAAGTATCACTTGCTACACTAAGATATACTG
TAATATTCATCACACTGTGTATTTCCACCAAGTCAGTTTAACACCATTAG
AAAATGCAATAGTAAAATCGTCTTTTGACAATCATCATCTTTCTCTACCA
CATTCTCTACCATCGATACACTTTCTCAAAATTTGGAAATTCGGATATTT
CATTCATTTGGTCATGAAATCCGTTAATCCAAATTATGAAGTTATTGTCT
CTTTCTCCCCTGCATCATGGTATCAACATAACCTATTAAATATTTATTTA
AAAAAAAATTATATTTAGGAATATATAAAGTGAAAATATACAATCTCCAT
CCTCCAAGCATCATGACAATGCATAATCAGATGATTGTCTCCAAATTTTT
TACAGGTTGTCAGGTTGTTAGGACTCAGGTCTAAAATATCTAGGAAAACC
TTACCAATTTTGTTGGGACAGTTTGTAACTATGTGCCAAACATTAATCTT
TTTAAAATTAGAAATTAAAATAGACAGCATATGTTATTAGAACGAAAAAC
TGAAAAAAATAAACGATGGTCAAGTAGCACTGATATAGAACTGAGATATT
GATGCCATTCTAAATAATTTCCACGTACTGCATGAATGAATTTCTTGTAG
AACCCAAAAGTCAGCAAGAAAATATTCAGGGGACGAATTTTGACATTTTA
ATTATGTTTGTTGAAACTTGAAAACGAGTAAACATAAACCAGTGTGCTGC
TGTGTGATGCTTGCGAAGTAGTACCTGGAAACACAAGAACTAAAACTATG
AATTGCTGCAGAAAATTATTGTAATTAACTTCGATATATAGCATGCATTA
ATTTTTTTGAAGTTACATACTTACATATAGCATGCATTAATTTTTCTTTT
AAAATTTATATATAGCATGCATTATTAACGCCACTACCCAACCAATTTCA
TATAATTATTTCTTGAATAATCTGGTATTGTTGATAGAAAATATAGTTTT
TTAAATAAAGATCATATTGTTGGTGGAAACTTTGGAACTTCTTTGCAAAG
ATCCATCATTTACTTTAAAAATATATTATTTTATTGTGTAGAACTTCTGT
AAAGAACTTCTTATACAGTCCAAACAATAAAAATTATAAATTACAAATAT
TAATGACAAATTTGTGATAGTTAAAATCAGATACCTTGCCGTAAATGAGA
AAATTACGATCTTTCTGTAATTTAAGTTGGTTTATTTCTTAATGAAATGA
ATGAAATATTCGAGCTTTAAATTTTAAGAAAGTTTATCAATGTGTACAAT
GGGGTCTGGGGAAGAAGTGATTGTCAAAAATGATTTTACCCTTTTAATTT
CCAACGGTGTAAGAACATCTCCAAGAGTATCGTAATGGGTTCCCTAAATA
TATAATAAACATTACAATCCTTAGTAAGTTACGATATTAAATTAAATAAC
AACTCCAACAACTGTCCCAATTTGTGTTCCCTGTTACTACTATATTAAAA
TTCAAAATCTGTTANAAAGAGTGTGAAAAAGGTGGGAAGTGAATAGTTAA
TTATTAAAAACAAAATGAGCAATAATTAGCCATTCCCTATAAATGACGAA
TAAAAGGGTGATCCTAACTTTTTAGGGAATCACTAAGACTCTTTTAGAGT
AACGTTTGTAGCATATTCCTCAAAATAGTTTTAGACATCATTTAGCTAAT
CTCCCGGAGATGCTCTTAAACTGACTTGACGGATATGCACACAGTGCGAC
GAATATTATATTGAAGTCTAGTAAGTGATACTTTCTGAAGTGGAATATTG
CAAGTCATTGACATGCTAACTGCAAATACACAGTTTTTTTTTTTATATTT
GATATTTGATATCCTCAGTTAGCAAGTGTGGAACTGACCAATGTTTTTTT
GATGACTCTGGGTTTATATTATATATGATATGGAAAATTCTATCGATTCT
GAGAGGCTTACAACATTCAAATCTTAGACACCCAGATTTTGTCAACCAGT
GCTTAAGTTCCTAATGTTTCTGTACCCAAAGGCCCGCAAAAAAAGGAAAA
AATAGCAACTTATATTGCCTTTCTTGTTCAGCGTCAAGCTGAGAGAGTCA
AGCGTGATAAAGCTCAATTGAAGAGAGGAGATGATGCCGAGCCACAAATT
AAACCTGATATGGTACCAGTTGCCAGATTTCATGGTTCTCGTCTTGCCTC
AGGTCATGCACCATCACCATATCAACATACACAATCCGCCAACCAGAGAG
CCCCAAAAGTTGCACGGCTGTCTTCTGAGGCCACTATTGGTGCTGCTCTT
GTCGAAGCTGAGAATAATCTTGAAAATGAGGTACATTTTCCACCTCTGGA
GTATTTGTTGTGATGTGGCATTACTGTATTCCATTAGCCATCGTATTACA
TCTGGTAGACTGCACTTTGCTGTAGTTTTGCTCTCTGAGCTTCCATTGTG
CACAAAATGATACACTATTAAAATTATCTAATTTCATGTTATTATATTCA
CTTTTTTTAATAACATGCCATGGTCATTATTGCCTTCATTTGTCATCTCC
TACATGCATAACACTTTTAATAGTGCTTTGTTTGCTAAATCATCCATGAT
TTTCCCCAGGCATCTGACAACAAAGAGGAATTAAAAACAAAGTTAAAGGG
GATACTTCGTGAAAAATCTGATGCTTTCAACTCTGAGAATCCTGAGGAAG
ACAAGGTATGAGCAAAGACACCCAATTGCTTTACATCTAAATCAGCCATA
GTCTTAGAAAATGCTCACTTGTTATTGATGTTTCTGTAATACATTCATTA
GAATGGAGTAGTCTTCCTCCAGAATAATATGCATGCCGGTAATATGTTTC
GAAGTACATTACTTAATTTGTATCTTGTGTCATAATATGTTTACACAATA
ATGAAACATGTGGCAAGTTCCATGAACTCCCATGTACCCATATTGTATGC
CTTCTCCCATGCTCAGTTCCTCGTACTTATTATGTAAAGTAGTGTCTCTT
AGTTCTTGGATTCAATTGACTCTGATACTTTTATTAAGTCCTTGCTGCTA
CGTAAGAGTCGACAAGCATATATGATATTCTCGTCTATACTTGTTAGGTA
AAACTGGGAGAGCCAGGTTGGAAGGAGAGGTATTATGAAGAAAAGTTTTC
TGCAAAGACTCCCGAGGAACTTGATAGGGTTCGCAGAGATGTTGTAAGTT
GTTTAATGTAAGCTTTAATATTCTTATATTATATGGAAATTTCCTTGGAA
TATTATAAAGAATATTCAGAAAGTCCAGCATCAAAAAATAGATAGTATTA
TTACTCCTGGAACTACCCAACCATTAACATGATGAAAATTCATGAGATGT
CATTAAATGAGACTGGAGGAATTATTAATTTCATTCATACTCCTTTGGCT
TTTTGACAGTCTGTATTCAAGGGGAGATGTGTTCTCCACAGACTAACATA
ACCTTGTCTGTTTCACAGACCGTATGACAAATTTTAATATTTTATTGAGC
AATTTTCTACCCTAAGTAAAGCTTTACATCAAGGTGGCTTGGTGGCACTT
TTGTATTGGTAGCAATATAACGAGTTAATGTAACTCTGTGTAGGTATTGA
GTTACGCAGAAGGTTTGTGTTGGGTTATGCATTATTACTACGAAGGAGTT
TGTTCATGGCAATGGTATAGTATTACACTGCTTATGAATATATATATGTA
CAATTTACAATTTACTCCTTTCCTTCTTTCATAAGTGTATGAGATATTTA
CAGAAAGGAAAATCGCATGAAGCAAGTCACAATTGGAAAATCGTTTATAT
GATCATTAGATTTTTATTTCGGTCAGGATGGGTACATTTAATTTGTGTAA
TTATTTCAGATCATAATCAGAAATAAAGATCTCTGTCATTAGCTTGGACT
TTGGAGGCTTTTACTATCGGCTTTAGTATATTATGTCAATTCCATAATCA
CGTTTACATAGAAACTGTTGATGTGGCAATTCAATTCAAATCTGATTCAG
GAAATTTGACAGAGAAATTAGTTAGGTCAAGTCCAATGGTTTGATACATC
TTATACTGATTGAATCAAAATTAAAATTCATCACTTCAATGGTGTGCTAA
TTTTGTTCTAAAGTAGCACACTATAATTTGTTCTATATATATTAAACAAT
AGATAGATGGAGCTATAATTGCCACCCTCATCAAAAAGTGAAAAAAGGGA
GGGAAATGGATAAAAATAGATGCTTGAAAGTGTAAAAGTTAGCTATATTT
GTATTTAAAAGTGAGGTGTATTTGGAAGTTAGTTAAATACAAAACAAGAT
TTAGAGCAATGCATTGGGACATGGTACGTATTTTGTGCTGAATTATAGCA
ATAGCTCCATCTATTTTAGCTAAACCATTGCATGCTCTTAACAAAAGAAC
CCAAGCAAATGCACCAAAGTGAGTACATGTATATTTCGGTCTTCATCATT
TATTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGA
GTATTCTGCTTCTTTAAGCTCAGATTCTACCTAGAAAAGGTTTTGGCATA
TCATTACAGCTTTCTAATCTTTATTCTCAAGATAAGTTGTTGTTTGCAGG
TTTTATCCTTATCATTATGCTCCATTTGCTTCTGATCTTAAAGATCTTGG
ACAGTTGAATATAAGCTTTGAACTTGGATCTCCATTCAAACCATTTAATC
AGCTGTTGGGAGTATTTCCTGCTGCAAGGTTGTGCCCACCTTTTACCTTT
TATTCTTCTTTCCATCTCTTTAACGTTCAGACAGACACACACAAAAAAAA
TATATCTCGGGAGGTGCTAACAAATTTTCCTTGCAGTTCCCATGCACTTC
CTCAGCAGTACAGGAAATTGATGACTGATCCAAATTCGCCTATCATTGAT
TTTTATCCAGCTGGTAGGTGTCTGTGGCACATCAGTGATAATTGATCTTT
GTGGTTCTAATTAATCTCCTTTTATTAAACTTAGTGCTGTTCATGTATCA
GATTTTGAAGTGGATATGAATGGGAAGAGATTTGCTTGGCAGGTGCGATT
TAAATAATATCACAAGGCTTCACTTTTCTTGTGATGATATGCATAGATTG
CTTCTTGACACTAATATAGATGGGAGTTTTTGACAATTTTTCTTTCTAAA
AAATTGTATAGGGTATTGCCAAATTGCCGTTCATTGATGAAGCTCGTCTT
CTTGCAGAGGTTGCAAAAATCGAGTATACTTTAACGGTATGTTAAAGTTA
TGCCTTCAAACAAATCCAGCCAGATGATTGTTGTGCATAGATTTATTTCA
CTATAAGGATCATCATTTTTTATAAACTAATGTATATTTTTTTGTAGGAT
GAAGAAGTTCGGAGAAACAGTACAATGTATGACATGCTTTTTGTGGCACT
ATCTCACCCTCTATCTCCATACATATTTTCTCTGGATGATCGTTGTAAGC
AGTTGGATGACAAAGAACGAACTCAAATAAAGGAGCAAATTGATCCTGGG
GCCAGGTAGACATATTAAATGTATATAAGTTTCTGTTGTACTTCCTAGCT
TCTATCTTTATGTACTTACAAATGAAACTTGCAAGTGATTGGAGGGTGTC
ATCTTTGTCATAGAAATCATAATCAATTTCATTTGAAGCATGAGGCATTT
GCAAGATCTTATTGTGTTAAACTCTAATCCGAACTTGATTTTTATTAGAT
TAGCATGCAGCGTGACAAATTGATATCACATTTTTTGCTTAACTGATGAT
TCTTGAACATTACCTGCATTAAGCTGTACAGGTCCTCAACTCCATAACAA
TCTAGACCAATTTGATCTTTTAAATAAAATTCTAATCTTGTTGGCAAATG
CTAAATTCTGCTACATTACGTCCATGTGATTAAGTTGACGGCTTGCGGGT
TACATCCCCTTCCAGCAAACACACACCTTTTCTCCACAAACTTAAATGGA
AAGAAATAGGCTGGAACGTGCATTTCGGTTTAGACTTTCATGTGGAATGT
TTTCGCTGCTAAGAAACTACATAGATCTATTTGAACTTCTCTGATTAGTT
GAGGGCTCTTGTGCAGTGGTGGGATGAATGGTTATATATCTCTTTGTGCT
GGAGATCCATGCCCAACAATATTCAGATCACCGGTTGAGGGAATGGAAGA
TATTATGGACAATCAAGTGATGTAAGCTTTTGAGCAAGAAAGAATATGTT
TGGGGTTTTATGTATTTGTATATATGTTCTTAAGATCTTGTACCGTCTTG
CTTTTCAGATGTGCTATTTACATACTTCCAGATGCTCATAATCATATTGC
ACATCCTCCTCCAGGAGTTAAACTTCCGAAAAAGGTATTTCTTCTAATCT
GCAGCAGCTCTACCAGTGTCCACTGATCCAGTGATATCCTGGTCATCATA
TTGATGCACATGCTTATGTTTCGAGTTTTTAGATCATGTAGTTGATAGGC
CTTTGTGTGAAAGTACCTCGTTCGTACTAATGTGGATTTCTTATTATGGG
GGAAGGGAGTGGAGTTGCGCACTGTTACTATTTAATAGGCCAATTTCGTT
AACCAATTAAGCACACATATGTTGCTTGCAAATTTTTTCTGCTTTCTTTA
ATTGGTTCTATGTCTCCCAATTCTCTGATAGTTGAGTGATATATGTTTGA
GGCATGCTAATTTTGTGCTGCATTAATAATATGCTATAATCTTCATGTAC
AGACTGTCTCATTTGGGGATCTAACGCCTGAGCCTGTTCTGTGGCACGAA
GATTCTGGAAGGAAGCCCTGGGAAAATAAAAGGTAATTATACTTCTCTTA
TTATGGTACTGGTTAATTTACTTGATGATATCTAGTCTACTGAGTAGCTT
TTTGGTCTGTGGAAAATCTCCTTTCAGGAATAACCCCCCAGGAGCCATTT
CTGGAAGGCAGTTGGGTGATGCTGCACATCGGCTTGTAGCAAATAGCTTA
CAGATAAAGAAAGATAGAAATGTTGATGGAGATCACTATGGTCATCCTCC
GTATGTCACTACACATGGCCCAGCGTTTCATCCAAACCAAACTCTTAGAC
ACCATGGTCAGGAACAGTACAGAATGGTGCCGCCAGCTTATCCTGAAGGT
CGCCATATGTTACCAAATTCTGTTCCGGGGCACAGTCAATATGATCGTTC
TTATAACCAACCCTATGCTTCATCATCAACACGCCATCCTAACAATTGGC
ATCGTCCTCCATTGGATCAGAGTAGGGATTATCCTCCACAAGTATATCAC
TCCCAAGGATCACATCAAAATAGGCATGTATATCAACCACGTGGCCCTCT
TCATGCAGTCCAAGCACCACCTCCAATTGCAGCTGGTGTTCCGTTTTATC
AACAAGTCGGATATCAAGCATATGGTGGTGCCAATTATCATCACCAGAAT
GGGGGCCCACCCACAGTAAACCCAAGAGTAGGCAGAGATTATGGTCGTCA
TCAACAATTTGGCAACCAGTTCTCAGCATTAGACATTAGTAGAGGAGTTC
GAAGGCCACCACCGCCACCTGGTTACCGCCGTTAA

Sequence Length:

10585

Sequence Checksum:

944ea7ea1fa747df5e34fb29f507d58e

View location in JBrowse:

DCARv2_Chr5:19732118..19742702-

Cds:

>DCAR_017477cds ATGTTTGATTACATCGATAGGCTTTTCGTGATGGTGCGTCCTCGAAAGCT GCTTTACATGGCTATCGATGGTGTTGCCCCAAGGGCAAAAATGAACCAGC AACGATCTAGGCGGTTTAGAGCAGCCAAAGATGCAGCAGATGCGGCAGCT GAAGAGGAAAGGTTGCGTGAGGAATTTGAGAAGGCAGGCAGAAAGCTTCC CCCAAAACAGGAGTCTCAAGTCTGTGATTCTAATGTTATAACTCCTGGAA CTGAGTTTATGGCAGTTTTGTCAGTTGCTCTACAGTATTATATCCATCTT AGAATTAACAATGACCCTGGATGGAAATCTGTGAAGGTAATACTTTCTGA TGCAAATGTTCCTGGTGAAGGGGAACACAAAATTATGTCCTACATTCGAC TGCAGAGAAACCTTCCTGGTTTTGATCCAAATACACGGCACTGCCTGTAT GGTTTGGATGCTGATCTCATCATGCTGGCTTTGGCTACCCATGAGATTCA TTTTTCAATTCTCAGGGAGGTTGTATTCACTCCGGGACAGCAAAACAAGT GTTTTCTTTGCGGTCAAATGGGCCACATGGCCGCAGAATGTGAAGGAAAG GCCAAAAGGAAGAATGGGGAGTTTGACGAGAAATGTGAAATTGTTCCCAA AAAACCATACCAGTTTCTCCACATTTGGACTCTTAGGGAGTACTTGGAGC TTGAGATGAGGATTCCTAATATTCCTTTCACAATTGATTTTGAGCGCATC GTTGATGATTTCATCTTCATGTGTTTCTTTGTGGGCAATGATTTTTTACC ACATATGCCTACATTGGAGATCCGTGAGGGTGCAATCAATCTGCTTTTGG CTGTTTACAAGAAGGAATTTCGAGCTTTAGGTGGTTATCTGACCGATGGA AGCAAGCCAAACTTGAGCAGGGTAGAGCATTTCATTCAAGCTGTGGGATC ATACGAGGACAAGATTTTTAGTAAAAGAGCTCGGTTGCATCAGCGTCAAG CTGAGAGAGTCAAGCGTGATAAAGCTCAATTGAAGAGAGGAGATGATGCC GAGCCACAAATTAAACCTGATATGGTACCAGTTGCCAGATTTCATGGTTC TCGTCTTGCCTCAGGTCATGCACCATCACCATATCAACATACACAATCCG CCAACCAGAGAGCCCCAAAAGTTGCACGGCTGTCTTCTGAGGCCACTATT GGTGCTGCTCTTGTCGAAGCTGAGAATAATCTTGAAAATGAGGCATCTGA CAACAAAGAGGAATTAAAAACAAAGTTAAAGGGGATACTTCGTGAAAAAT CTGATGCTTTCAACTCTGAGAATCCTGAGGAAGACAAGGTAAAACTGGGA GAGCCAGGTTGGAAGGAGAGGTATTATGAAGAAAAGTTTTCTGCAAAGAC TCCCGAGGAACTTGATAGGGTTCGCAGAGATGTTGTATTGAGTTACGCAG AAGGTTTGTGTTGGGTTATGCATTATTACTACGAAGGAGTTTGTTCATGG CAATGGTTTTATCCTTATCATTATGCTCCATTTGCTTCTGATCTTAAAGA TCTTGGACAGTTGAATATAAGCTTTGAACTTGGATCTCCATTCAAACCAT TTAATCAGCTGTTGGGAGTATTTCCTGCTGCAAGTTCCCATGCACTTCCT CAGCAGTACAGGAAATTGATGACTGATCCAAATTCGCCTATCATTGATTT TTATCCAGCTGATTTTGAAGTGGATATGAATGGGAAGAGATTTGCTTGGC AGGGTATTGCCAAATTGCCGTTCATTGATGAAGCTCGTCTTCTTGCAGAG GTTGCAAAAATCGAGTATACTTTAACGGATGAAGAAGTTCGGAGAAACAG TACAATGTATGACATGCTTTTTGTGGCACTATCTCACCCTCTATCTCCAT ACATATTTTCTCTGGATGATCGTTGTAAGCAGTTGGATGACAAAGAACGA ACTCAAATAAAGGAGCAAATTGATCCTGGGGCCAGTGGTGGGATGAATGG TTATATATCTCTTTGTGCTGGAGATCCATGCCCAACAATATTCAGATCAC CGGTTGAGGGAATGGAAGATATTATGGACAATCAAGTGATATGTGCTATT TACATACTTCCAGATGCTCATAATCATATTGCACATCCTCCTCCAGGAGT TAAACTTCCGAAAAAGACTGTCTCATTTGGGGATCTAACGCCTGAGCCTG TTCTGTGGCACGAAGATTCTGGAAGGAAGCCCTGGGAAAATAAAAGGAAT AACCCCCCAGGAGCCATTTCTGGAAGGCAGTTGGGTGATGCTGCACATCG GCTTGTAGCAAATAGCTTACAGATAAAGAAAGATAGAAATGTTGATGGAG ATCACTATGGTCATCCTCCGTATGTCACTACACATGGCCCAGCGTTTCAT CCAAACCAAACTCTTAGACACCATGGTCAGGAACAGTACAGAATGGTGCC GCCAGCTTATCCTGAAGGTCGCCATATGTTACCAAATTCTGTTCCGGGGC ACAGTCAATATGATCGTTCTTATAACCAACCCTATGCTTCATCATCAACA CGCCATCCTAACAATTGGCATCGTCCTCCATTGGATCAGAGTAGGGATTA TCCTCCACAAGTATATCACTCCCAAGGATCACATCAAAATAGGCATGTAT ATCAACCACGTGGCCCTCTTCATGCAGTCCAAGCACCACCTCCAATTGCA GCTGGTGTTCCGTTTTATCAACAAGTCGGATATCAAGCATATGGTGGTGC CAATTATCATCACCAGAATGGGGGCCCACCCACAGTAAACCCAAGAGTAG GCAGAGATTATGGTCGTCATCAACAATTTGGCAACCAGTTCTCAGCATTA GACATTAGTAGAGGAGTTCGAAGGCCACCACCGCCACCTGGTTACCGCCG TTAA

Pep:

>DCAR_017477pep MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAA EEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHL RINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLY GLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGK AKRKNGEFDEKCEIVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERI VDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDG SKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDA EPQIKPDMVPVARFHGSRLASGHAPSPYQHTQSANQRAPKVARLSSEATI GAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLG EPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSW QWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALP QQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAE VAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKER TQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAI YILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRN NPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPPYVTTHGPAFH PNQTLRHHGQEQYRMVPPAYPEGRHMLPNSVPGHSQYDRSYNQPYASSST RHPNNWHRPPLDQSRDYPPQVYHSQGSHQNRHVYQPRGPLHAVQAPPPIA AGVPFYQQVGYQAYGGANYHHQNGGPPTVNPRVGRDYGRHQQFGNQFSAL DISRGVRRPPPPPGYRR*