DCAR_018601 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_018601

Identifier:

DCAR_018601.gene

Locus Tag:

DCAR_018601

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_018601, is a part of gene, DCAR_018601.
The genetic_marker, MK005496 K2940, is located in gene, DCAR_018601.
The genetic_marker, MK007703 TP147982, is located in gene, DCAR_018601.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_018601	DCAR_018601.mRNA	mRNA	DCARv2_Chr5:31432587..31441399

Sequence:

AAATAACAAAAGAGAATAAAAATCAAACTCAAAATAACAATAATGGACAA
ACAATGAAAAAATAGAGGAAGAAGACGACGAAGACGAACGAGGGAAGACA
TCGTCCGCCGTTTGCATCCTCTAATTTAATTATACACACCTATACATACA
CAGACATACATCTATATTCTTAATTATACACACACAAATCAAATCAATTG
AGTTGAGTTGGGTCAATTGAGATCCATCGAGGTCAGATCTGATCTAATTG
AGATCAATCAATGGATGATTTCGGTATCTTTGCTCGCGATTTAGGTTACA
AACCGCAAGGCAAATCGGCGCCGATGAAATCGGCTGGAATCGGGTCGGAT
CGTCCCTCGTCCGCCCCGTTTTCCGATGATCAGTTCGGCGATGTGTTCGG
TGGGCCTCCGAAGTACTCGTCGAGCAATTCGAATGCCAAGGCTGCTGCTT
CTTCGATGTCGGATTTCGATTACGATTCGATTTTTAAGGCCTCGAGAAAT
GAGGCGAAGAGTAAATGGGATTCGGCTCCGTCGTCTGATCCGGTTTACGA
TAAGCCGGTGTATGATGACGATATATTTGATGGATTGCCTGGTTTGAAGA
GTAAGACGGTGTCGTCTAGTAGTAGGTTTGAGGAGAATGTGTTTGCAGAT
ATTGCTAGTTCGCCTCGCAAGGGGAGTAGTGGTCGGGATCATTTTGAGGA
TCTTTTGGGGAATTTGACTAAGAAGGAGAAGGTGGAGCCGAAGAAAAAGA
GTATTAGCAGGACTGCCAGTGATTTTGATGATTTGTTGCCTGGATTCGGG
AGCAGTAGTCCGAGTAACAGGTATTGTTGCACTCGCATTGTGTCTTTTGT
GAACATGTGGTTATGATTAAATTTATCGGGTAGCTGCTGTTTGTTTAGCT
TACTGAATTTATGTGATTTTTTACATATAATTGATGAATTATTACCTGCA
CAAATCTATATAAGAGTTTTGAATTTGCGGGACGGCTACTACTTTAGATC
TATGTTACCTGGTCCCACAAGATGTCTCCGTAATGGAATTGTGTTCGAGT
GTTAAAATCTAATGTTTGGAAATTTTGAATATTTTTGCGGCGAAACAAGT
GGTGAGCGAAATAAAGTGACGTCATATCCATCTCCAGCATGGGTATTTTA
GCTAAATTAAATATTAGGGTAAACATAGCTGTAGATGGGGTGGGTTACTT
AATGTTGAAAGTATATTTATACTATGTTGATTGTAGAAGTGCTGTTGTGA
TAGGAAGTTGAATATGATTTGTTTGCAAATATGCTTGTGGCTTTATGCTT
CCTGTCCTGTTTCCATTTTTCATCTGCTTTATGCTTCTTGTTTATGTTTC
ATGTTTTCTTTGACTATTATAGCGAATAATAGGTAGAGAAGAAAGCGTTT
ATTTAGTAACTTCAGTTGGCAGTTACTTAATTCTTGTAAGCGCGAGGCTA
GGCGCTCACCTAAGCTACCGTTAGGCGGACTATATGGTTCCATTATTTTC
TTAATATGCATGCATTTATATGTTATAACAAAACAGATTACCTACATATA
TGTGTAGTTACACACACACACACACATATATTATATGTGGTTATATATAT
ATTATATATATATATATTATGTAGTTATATATGCTGTGTATGTAACTATG
TATTTTTATACAATTATATATGCGTGTATAATAATTGGAAAAACATAAAT
ATATGCTTGTATGTATAGTATATGTTTATATGCTTGTATAGCTCTGGGAA
GAAAACTTTAGAAAAAAATATTGATTCTGAAGCTCATCGTTTGGGAGATG
TGGTGTGCCTCCAGTGCTGTGCTCGCTTTTATGTGCCTCGAGTGCTTATG
TGCAGTTCAAAAAGCGCAAGATAAGTGCGCTTTTGTAAAGATGGGACATT
TTCAAAGGAAATGGGTAAAAAACGTACGGACAACTGACACTAATAGATAC
AAACCATATATACATACAAGAATGATAGATATCGAACGGGAGACGAAGAT
TAAACTCATCTTTTTATATGATTCTTGCATATAGATACACATATGTTGTA
TATACTGATTTATTTATACATACAATTGTTGTATACACACATATGACTTG
AGGATAATGAAGAAGACTTTGTTGAAAATCCGAATTATATTAGTGAAGAT
GATGATCTTGTGGATATTAATGATGAAGACGAAGAATGGACTAATTATGC
AATTCTTTGTTACTTTGACTTCAAATTATTCTACTTTGGATCTATATCAT
GATGCATTTTATTTTTTCATCAATTAAATGTCTTCTTATCTATAAATCAA
CAATATTCTACTTAAATATCGATTATATATGTATATTTATTTGTATTCAA
TAAATCTGCGCATTTCGCATTGCGCGTTGCGCTTATGCTCCAGGGGGCCT
CTGCGCTTCTATGCACGTATCACGTTTAATAACACTGGATGGGCCGGAAA
TAACCAGAATTATGCAGATTTAGGCGTTGCCTACTCATCTAGTAGCTGTC
TAAGTACATAAAAATACAGGCAGGGCAGACGCCGTCCTTATTCCACCGCC
TTCTCGCCCAGATGACGCCTTGATAACTATGAGTTCCCGTGAATAAATAT
GTTATATTATCATGCATACTATCATTATTACACGTGCAGGTTGGATTTGT
AGTCCTGAATGAGTTTTCTGAATCTTTTTGTAGTTTCTTATAGGTTTATC
TAGTAAGAGCAGCACATATATTGAAGATAGCAGGTAGATTTATAGATAAA
CAGGGAGGACAAGAGAGATTAGACCAGAATTGCAGAGTTAGAAGACAGAA
AACTAGAGAGATTCACTAGAGAGGTCGAGAATAGTTGTGAGAGATAGGCT
AACATGACCAGAAAGTTAGTTGTAGAGAGAGAAAATGACTAGCAAACTAG
AGAGAGAAAGATTGTGGAAAATATTTATTTTTCTTCATATTCAAATCATA
ATCTGAAAACCATTACAACTTCTACTTATAGACTCTTATAAGTAACTAAC
TCTGAAAAGACTACAATACCCCTAGATGTCATACTACTACTTTACTGTAG
TACTAACAAGTCATGACTATTGTACTAATGAGGTTCGTTGTTCCAATAGG
TTCTTCCTTCAAGATGGTAGGCTGGTAGTTCTAGACCGAGAGAATTGGCC
AAGGTTTTAAATTCTTATAAAAAACGAATATAACCAAACATGTATTTCTT
ACTTGGAAGTAGGGTCTAGTAACGTTTGGATGTAAGTAGGCCTTACCGAT
GGCTCTACCCAAGCAGTATAGTGTACTTGCCTCGTGGTTTTTTGAGATTT
TTTTGGAAAGTTTTGAAATTTTAAATCTTCTGCTGTAGGAAATGAGGTTT
TTCTTTAAATGGTTCATAAGTTGATAGCCTTGTATCTCAGGCTTAGCATT
TTGATGTATACATTGCGCATTTAGTATAACTGGATTTCTTAATGATCTTT
ATATTGATTATAGAGTATTTCTTTATTAGATTAAAATCAATTACAAATAA
GAATCATAATACCGAAGCACATTAATCTCCTTGAAATTGGGTTTTCAGTA
GTGTGAAATGAAGTTTAAGAGGTTTTTTTTGTTCTGATTGTAAGTTCATA
CTGATAGGGTCAAAGATATCCAATCATCACAAATTGAATCGCAGTGCTAA
ATATGTTATAACCTCTAATCATGCCAGTGCACATGCTACTAGTATGTGTC
ATTTTAGGTAAAAGATATTTGGATCAAGTAGATAGCATTCCTCTATCTCG
TTACTAGCAGTTGAAAGAAATAAATCTTCAAGCTCAACAATGATGGGAAA
GCAGCTGCCTTTTTATTCACTCAAAATTATTTTGGTATCGAGTTAATTTT
AATGAGTAAGACAATAAATTTTTATCATGACCTTTATGCAAGCTTTTGTG
TCTGATTTAATAATTCCACATTTTTCATGCAGCGATAAACACAAATTTTT
GTTTTACATTGCTGCTTTTATTTCTATTTTAATGATGAAGATAGGTGACA
GAATTTGAACTGTTGAAAATATTTTCGTAATGGGAAAAGATCATTTATCG
AGCAAGCTTTCCTTATTGTTTGAGATCATTTTCCTGATACTCTCTATGCT
CCGAAGAAAGAATTGTTACAAATATATGAAAATTTGTATTTGTGATTGAA
ATGTTTTCAACACTGTTATATGTTGCATGTGGTTCTCATTGCAGATATTT
TCCCCTACATGCAAACAAGTCAAATGTTTGTACCTAAATATGTAAACTTA
CCTTTGGGCATATGTCTAACTTAAATGCATTTTTTAAGTTATGTTTATGC
AAGCCGTCTGATGAAACTAAAGCATTTACCATGGTACATATTAACATGTA
TGGTCACAAAATCTTTTTAAATAATCTCTCTTGCCATTTATTTATTTGAC
ATGCCTGTAACTTTTGTGGACTCTGCACATCATTGAGAAGTAGTTCATTA
ACTTCATATTCGTGTTGTTTGTTTGTGCAGGCCTATACCCGAGTCCAATC
AAACTTCGAGACCACCTGCTAATTCAAATCAGACATCCAAGGTGATAGAT
GACCCTTTTGTGGTACTAGAATCAACTTCAACTCCAGGGGTGTCTTTTAT
AAGTGATCCTCTAGAAGAGATCAGCAAGCTTAGTAAACCTGGAAATACAG
AGGAAAACAATTCATCTGCGAGTGCAGGAGTATTTAATGATTTGGACCCC
CTTGGCGATTTTGTTAAATCTGTGCCTGCACATTCATCTGGAATTAAAAA
CTCTGGGAAAGATGGGAGCCCAGCTAGGGCAAGATCAAGCATGAAGAGGA
CAGACGAATCTGCTAGTACTGAAGCTTTTGGAATACCAGCTTTTAATACT
TATACAGAGAGAAGCTCTCAGAAGAAGGTGCCTGTTGATGATTATCATGA
ATCTCATCAAACCTTATTTGAAATGCCTGCTGGCCCAATTGGGTCTCAAA
AACCAACTGGGCAACGAGCTTCTTCTCCTTCATATAGTGTCGATGTCAGT
GAGTCAAATTCCCAGTCTGATCAGTCTTATAGAACGGAAGAACATTCACA
ATCATCTGAAGAAGTATGGCTCACTGTATCCGAAATTCCTCTCTTTACAC
AACCCACCAGAGCTCCACCACCTTCAAGACCCCCTCCTCCAATACCCAGA
CACACATCAAAATCTGAAAAAGCCTTCTCGACTTCAAACAGTAGACAAAA
AGGCAATGATTTTTCTCCACCATCTTCTGCTCAGTACCCTCAGAGTCACA
ATCCTTTCCGTTCTGCACCAAAGAATACCATGGATTCTTCGATAGATGAA
CTAGAAGAATTTGCTATGGCTAGAAATTACAATAATTTCAATGAAAATTT
TGAAATCAGTTCCGGGCACAACAGCAGCACAAACTCTGCTGCTGCTGCAT
CTGCTGCTGCCATGAAAGATGCTGTGGATCGTGCTGAGGCAAAGTTGAAG
AATGCTAAGGAGATAAGAGAAAGAGAGAATGCAAAGGCTGCTAGAAGTAA
AGAATCTGTGCAGCGCGAAAAAGATGAGCAAGATGTACTGGACGAGGAAA
TCGTAGAAAATCAGGAGAGATTGAATCGCGAGAGGCAACAGAGGGAAGAG
GAAGAAAGAGAACAGAGGAGACTAGAGAGAGAAAGAGCCAGGGAGATCGA
AAGAGAAAAGGCTAGACAAGCTGTCGAAAGGGCTACAAGGGAAGCTCGTG
AAAGAGCAGCTGCAGAGGCCCGTGAAAGAGCCGCTGCAGATGCTCGTCTA
AAAAGTGAGAGAGCTGCGGTTCAGAGAGCACAAGCTGAAGCACGTAGTAG
AGCAGCAGCCGAGGCAAGAGAAAGAGCAGAAAGGGCTGCTGCAGAAGCTA
GGGAAAGGGCAAATGCTGAAGCAAGAGAAAAGGAAGCCAAGGAAAAAGCT
GCCAGGGCTGATGCAGAAGCACGCCGCAGGGCTGAACGAGCTGCTGTGGA
TCGGGTTGCTGCTGCAGCTAGAGAAAGAGCAGCTGCAGAAGCACGAGATA
GGCAAGCTGCAGCTGCTGCAGCAGCAGCAGCAGCAAGAACAAGCCAACAA
AAGAATGATAATGACCTAGAATCGTTCTTCAACATGAGTTCTCGACCAAA
CAGTGCACCAAGGCCAAGGGCGAGCTCTTCGGTAAGAAGCATAGTGGTTT
ATATGTACCATGAATTTTTGCTCATCTCACTGCATAGGAAGTTAAAGAGT
ATATGTTTATTTTGTAATTGTACACATGCTGTGTCCCAATTACCAGGACC
CTTCGTTGGATCCACATTCTCAAAATAGGGGAGGGGCTGATGGCACTAGG
AGGTCATCTCAAAGTGGAGTCACGTCAAACATGAAGAAGGCATCTTCGAC
CACTAACATCGTAGATGATCTCAGCTCAATTTTTGGAGGTATCTCATCAA
TGTTTTATTTATTGTATACGTTTACACTCTTTTACCACTTTTCTGATGTG
TTACTTGGTAAATGTTTTCAATTGCAAAAGGTCCTCCATCAAGTGGAGAT
TTCCAGGATGTTGAAGGGGAGACCGAAGAAAGGAGAAAAGCTAGATTAGA
ACGCCATCAACGCACTCAGGAGCGTGCGGTATGACTTTCTTTACCTAATG
ATAACTTAAATCGACTTTAATTGATAAACATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
ACAAACCCCGTCCCGCAACGTAGTTTACTTCTAATGTTTTGGTTTTTATT
TTCAGGCTAAAGCAGTGGCTGAAAAGAATCAACGTGACCTTCAGCTACAA
AGAGATCAGGAAGAAAGAAGTGTAAGTAGTTGTAGCATCTCGTATTAGAT
GTTTTCATAAATTTGGTCAAGTTCATGGGTATGGTAGCTGGTCTTTGATT
GTCATCATAATAGTTTAGACACAAGATTTAGAATATACTCCCTCCATCCC
AATTTAGATGATCCTTTTGGAAAAGAAATTTATCACAAATTAGGTGAGCC
TCGCTGTTTTCAATGTACAAATATCAATAATCTTCCAAATTTACCCTTTC
TTATTTGTCATTTTCAATGTACCATCAGCACAATAAATATTGGTAGAGAT
GGAAAAAAGCACAATCATTTAATACTTCTTAATATGTGTGAAATTAGCAA
AAGGGTCATCTGAATTGGGATGGAGGGAGTATTTTTCACCTGTAAATATT
CGGCCCACGGTCAAACTTCACATTATCGTTAGGGCTTTTTTTGAGTATCT
TGCTTGCCTTTATTATGTTAGACCTTAAAATAAATTAACAATTATGATAC
AGAGTCACAGACTCGTTCCCCTCGCCTGAACATGCATGTGTAAATTTTAA
AAAGAAGTAAATGCATGGAGTCGCATAATGTGAAACTATGGCTTAAAAAT
TCCTTAACTATGTGGAGCACGTATAGTTAGGACTGTACAGAACTATCTTG
TCCTGCTAAGATATTTACTTGTATCATGTTCTTATGAAATCAATTAACAT
TCTGTAGCCATCTTCTTTATAAAGTTGAGATACTCTACTTGTGTCAAAAG
AACAAGGAAACAAGAAACACGGAATGAATATTCTCAAAGACTTAAGGCTG
AAGGATATTTTTCTGCCCTCTGTTGGTTAACTTGCCTAACTTAAATCTTT
ATATATTTCAGAGATTTGCTGAAACATTAGATTTTGAGATCAAGCGTTGG
GCAGCTGGGAAAGAGGGAAACTTGCGTGCACTGCTATCAACATTGCAATA
TGTGTGTATTTTTCATCTTTATCTTTAATCTAACCTGAGTTTTTGAAAGA
AAAATTCTCCTGCAAAAACAATTCGGTTTGGTAGAGAACCCATCTTTACA
CTTTTAAATAATATTTAGGTGCTTTGGCCTGAATGCGGGTGGCAGCCTGT
TTCATTGACTGATCTGATTACGGGTGCTTCAGTTAAGAAAGTTTATAGGA
AAGCAACCTTGTGCATACATCCTGATAAGGTACAACAAAAGGGTGCAAAT
ATTCAACAGAAGTATATTGCTGAGAAGGTGTTCGACTTGCTTAAGGTATC
TTCTATATGTACAATATTCCTTCTGATTGATATATCGACTGCTTGACATA
ATCTTTATGCTATGCTACCCCGAATCTTCATTTTGTTGGGTATTAGACGC
TTATTTTAGGCCAAAAACATGTTAAATTTACAAGATATTGCCAAGTCTGA
TACTCGAACAAGTATCCATTTTGGACACTTTTAGCGGAGTCCAATTAGCA
TAGTCTTATGTGAACGAAGTTCTCTTTTGAGACATTCCAACATGTTTAGA
ATGTATCTAATGTATGCATATATTGTACTGAGAAGGTAAATCCCATATTA
TGCTCTTTTATTTTTGCTAAGTTTAATTTTTTTGCTAAGTATATTATGCT
ATTTAACTTCAAGCGGTTATATTTGGGGACTATTTTCTCTGTATTATTGT
TTCTAGAGAAAAGGCTTTAGACTCTGAAGTGCCCGAATAGTCTTGAAGTT
TGTATATATTTCTTGCTATATATGGGTTTTTTTTCAATTTCGAAGAATAT
TCTTTTGACTACATTCGACTCATTCCTGATCGTGCTTCACTCTTCTTCTT
TTCTTATATATTTATCCTTTTTGTGTATAATAGGAGGCCTGGAACAAGTT
CAATTCAGAGGAGCTTTTTTAATTTGTTTTGATGAACTTTGAAGCTGCTT
CATATAGGAGTACACAATTTTGCAAGAGAACCACAACATCTGGTTTTTTA
TATGTCCTGTACATCCTCTGCTGCTCTACCTTGTGTACTTGCTTCATAGT
CTGAGTTTTGGAATAGAGCTTGCAGTAATTTATGATGATGAAATCAAGTC
TGCAAGTGTAGCTGTAAATTGATTTGGATGCGAGCAGACGGAAGATATCA
TTTTGGGTTGCTGTAATAGTGTAATGAGCCCTTGCCACCCATGATTATAT
GCATATTTTGCCTTTCTCGGTCATACAGAAACAGTGTGTATCAGATGGTT
TCGTCTTGTCGGATGTTTTCTCTTTTATCTGTGCAAATTTATTTCTTTTG
TAATAGTGTTTCGTTATTCTTGTGGTTTTGTTGATTTATGATATATATCA
GGTTAGG

Sequence Length:

9507

Sequence Checksum:

29905dec9130e690efcbcac718e635c5

View location in JBrowse:

DCARv2_Chr5:31432153..31441659-

Cds:

>DCAR_018601cds ATGGATGATTTCGGTATCTTTGCTCGCGATTTAGGTTACAAACCGCAAGG CAAATCGGCGCCGATGAAATCGGCTGGAATCGGGTCGGATCGTCCCTCGT CCGCCCCGTTTTCCGATGATCAGTTCGGCGATGTGTTCGGTGGGCCTCCG AAGTACTCGTCGAGCAATTCGAATGCCAAGGCTGCTGCTTCTTCGATGTC GGATTTCGATTACGATTCGATTTTTAAGGCCTCGAGAAATGAGGCGAAGA GTAAATGGGATTCGGCTCCGTCGTCTGATCCGGTTTACGATAAGCCGGTG TATGATGACGATATATTTGATGGATTGCCTGGTTTGAAGAGTAAGACGGT GTCGTCTAGTAGTAGGTTTGAGGAGAATGTGTTTGCAGATATTGCTAGTT CGCCTCGCAAGGGGAGTAGTGGTCGGGATCATTTTGAGGATCTTTTGGGG AATTTGACTAAGAAGGAGAAGGTGGAGCCGAAGAAAAAGAGTATTAGCAG GACTGCCAGTGATTTTGATGATTTGTTGCCTGGATTCGGGAGCAGTAGTC CGAGTAACAGGCCTATACCCGAGTCCAATCAAACTTCGAGACCACCTGCT AATTCAAATCAGACATCCAAGGTGATAGATGACCCTTTTGTGGTACTAGA ATCAACTTCAACTCCAGGGGTGTCTTTTATAAGTGATCCTCTAGAAGAGA TCAGCAAGCTTAGTAAACCTGGAAATACAGAGGAAAACAATTCATCTGCG AGTGCAGGAGTATTTAATGATTTGGACCCCCTTGGCGATTTTGTTAAATC TGTGCCTGCACATTCATCTGGAATTAAAAACTCTGGGAAAGATGGGAGCC CAGCTAGGGCAAGATCAAGCATGAAGAGGACAGACGAATCTGCTAGTACT GAAGCTTTTGGAATACCAGCTTTTAATACTTATACAGAGAGAAGCTCTCA GAAGAAGGTGCCTGTTGATGATTATCATGAATCTCATCAAACCTTATTTG AAATGCCTGCTGGCCCAATTGGGTCTCAAAAACCAACTGGGCAACGAGCT TCTTCTCCTTCATATAGTGTCGATGTCAGTGAGTCAAATTCCCAGTCTGA TCAGTCTTATAGAACGGAAGAACATTCACAATCATCTGAAGAAGTATGGC TCACTGTATCCGAAATTCCTCTCTTTACACAACCCACCAGAGCTCCACCA CCTTCAAGACCCCCTCCTCCAATACCCAGACACACATCAAAATCTGAAAA AGCCTTCTCGACTTCAAACAGTAGACAAAAAGGCAATGATTTTTCTCCAC CATCTTCTGCTCAGTACCCTCAGAGTCACAATCCTTTCCGTTCTGCACCA AAGAATACCATGGATTCTTCGATAGATGAACTAGAAGAATTTGCTATGGC TAGAAATTACAATAATTTCAATGAAAATTTTGAAATCAGTTCCGGGCACA ACAGCAGCACAAACTCTGCTGCTGCTGCATCTGCTGCTGCCATGAAAGAT GCTGTGGATCGTGCTGAGGCAAAGTTGAAGAATGCTAAGGAGATAAGAGA AAGAGAGAATGCAAAGGCTGCTAGAAGTAAAGAATCTGTGCAGCGCGAAA AAGATGAGCAAGATGTACTGGACGAGGAAATCGTAGAAAATCAGGAGAGA TTGAATCGCGAGAGGCAACAGAGGGAAGAGGAAGAAAGAGAACAGAGGAG ACTAGAGAGAGAAAGAGCCAGGGAGATCGAAAGAGAAAAGGCTAGACAAG CTGTCGAAAGGGCTACAAGGGAAGCTCGTGAAAGAGCAGCTGCAGAGGCC CGTGAAAGAGCCGCTGCAGATGCTCGTCTAAAAAGTGAGAGAGCTGCGGT TCAGAGAGCACAAGCTGAAGCACGTAGTAGAGCAGCAGCCGAGGCAAGAG AAAGAGCAGAAAGGGCTGCTGCAGAAGCTAGGGAAAGGGCAAATGCTGAA GCAAGAGAAAAGGAAGCCAAGGAAAAAGCTGCCAGGGCTGATGCAGAAGC ACGCCGCAGGGCTGAACGAGCTGCTGTGGATCGGGTTGCTGCTGCAGCTA GAGAAAGAGCAGCTGCAGAAGCACGAGATAGGCAAGCTGCAGCTGCTGCA GCAGCAGCAGCAGCAAGAACAAGCCAACAAAAGAATGATAATGACCTAGA ATCGTTCTTCAACATGAGTTCTCGACCAAACAGTGCACCAAGGCCAAGGG CGAGCTCTTCGGACCCTTCGTTGGATCCACATTCTCAAAATAGGGGAGGG GCTGATGGCACTAGGAGGTCATCTCAAAGTGGAGTCACGTCAAACATGAA GAAGGCATCTTCGACCACTAACATCGTAGATGATCTCAGCTCAATTTTTG GAGGTCCTCCATCAAGTGGAGATTTCCAGGATGTTGAAGGGGAGACCGAA GAAAGGAGAAAAGCTAGATTAGAACGCCATCAACGCACTCAGGAGCGTGC GGCTAAAGCAGTGGCTGAAAAGAATCAACGTGACCTTCAGCTACAAAGAG ATCAGGAAGAAAGAAGTAGATTTGCTGAAACATTAGATTTTGAGATCAAG CGTTGGGCAGCTGGGAAAGAGGGAAACTTGCGTGCACTGCTATCAACATT GCAATATGTGCTTTGGCCTGAATGCGGGTGGCAGCCTGTTTCATTGACTG ATCTGATTACGGGTGCTTCAGTTAAGAAAGTTTATAGGAAAGCAACCTTG TGCATACATCCTGATAAGGTACAACAAAAGGGTGCAAATATTCAACAGAA GTATATTGCTGAGAAGGTGTTCGACTTGCTTAAGGAGGCCTGGAACAAGT TCAATTCAGAGGAGCTTTTTTAA

Pep:

>DCAR_018601pep MDDFGIFARDLGYKPQGKSAPMKSAGIGSDRPSSAPFSDDQFGDVFGGPP KYSSSNSNAKAAASSMSDFDYDSIFKASRNEAKSKWDSAPSSDPVYDKPV YDDDIFDGLPGLKSKTVSSSSRFEENVFADIASSPRKGSSGRDHFEDLLG NLTKKEKVEPKKKSISRTASDFDDLLPGFGSSSPSNRPIPESNQTSRPPA NSNQTSKVIDDPFVVLESTSTPGVSFISDPLEEISKLSKPGNTEENNSSA SAGVFNDLDPLGDFVKSVPAHSSGIKNSGKDGSPARARSSMKRTDESAST EAFGIPAFNTYTERSSQKKVPVDDYHESHQTLFEMPAGPIGSQKPTGQRA SSPSYSVDVSESNSQSDQSYRTEEHSQSSEEVWLTVSEIPLFTQPTRAPP PSRPPPPIPRHTSKSEKAFSTSNSRQKGNDFSPPSSAQYPQSHNPFRSAP KNTMDSSIDELEEFAMARNYNNFNENFEISSGHNSSTNSAAAASAAAMKD AVDRAEAKLKNAKEIRERENAKAARSKESVQREKDEQDVLDEEIVENQER LNRERQQREEEEREQRRLERERAREIEREKARQAVERATREARERAAAEA RERAAADARLKSERAAVQRAQAEARSRAAAEARERAERAAAEARERANAE AREKEAKEKAARADAEARRRAERAAVDRVAAAARERAAAEARDRQAAAAA AAAAARTSQQKNDNDLESFFNMSSRPNSAPRPRASSSDPSLDPHSQNRGG ADGTRRSSQSGVTSNMKKASSTTNIVDDLSSIFGGPPSSGDFQDVEGETE ERRKARLERHQRTQERAAKAVAEKNQRDLQLQRDQEERSRFAETLDFEIK RWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATL CIHPDKVQQKGANIQQKYIAEKVFDLLKEAWNKFNSEELF*