DCAR_018962 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_018962

Identifier:

DCAR_018962.gene

Locus Tag:

DCAR_018962

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_018962, is a part of gene, DCAR_018962.
The genetic_marker, MK002686 K0130, is located in gene, DCAR_018962.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_018962	DCAR_018962.mRNA	mRNA	DCARv2_Chr5:34817813..34826368

Sequence:

GAATGACCCACTTATAAACCCTCCTGAACAAACGCTTCTCACCCATTTCA
CTCTCTCGCTCTTCGCAGCGGTCTCCAACTCCAAGTAAGAAAATTCTGTA
GAATATGCTTTTAATTTAATCTTACATCTACACTCTCCTCGTATCTACTC
TTTAAATTCGCCGATATGCTTACTTACAACCTTCTGTGTGTCTATATATT
TGCAGTTTCCGAAGGCCCTTGTTCACAGTGGCGGTAGGGACTTTTCTTAA
TTCTGCCCTATATTACGATTTTTGTAGGTATATTTTGTTATGTTAGGTTA
AATATTGTACTACTTCTATGAAATTAATGTATTGTTAGATTAATTTGTGC
TAATTTTGTAGATATTCTGTTGTACATGCCTAGGTTTTTGTATGGAATGT
GTAAATAGCTGGAGACACGACTTTTTTTGGGAGAACAGATATGAACATTA
TCGAGTTTTTGCGTTAGTGAAGTATTGTAAAATCAAATAAAACATTAGAA
ACTGTAAATACAATCAGGAAATAAGACATATAGTAATAAACTATTGTTTT
TGGATAGGGGTACTTAATATTAGAATTTTACGTAGATTGGGATTAGTGAT
CTGTACAAGAGTAAATGCGGTACAATGTGTATAGCTTTATAAATTATTAG
TTGTAAATGGAGTGAAGGGTCGAGCTTAGAAAGAAATGGAGGAAAGAACA
GGCGAAGTGGTAACTGCAGCACCAAGTTATATATCTTATTTTCTTCAATT
CTACTGAGCAATTATTTTTGATTTTAATTAATTTAATCCTTTCGAGGAAG
AGAGTGTATAGGTATGATACGTTCATAATTTAGAGGTCTTGAGTCCTGAC
TTGAGGCGAATTAGTTTAATTATATGCATTTCAGTGTAGATAAAAAGGCT
ATCAGAATATGCTATGATTCGAAGAATTCACCATGCGATTCTTGAATTTA
ATGTTTGCAGTCAGCATTGTTATGTTTGCTTGATGTAAATATTGGCTACA
ACTTTTACTGATGTTTCTTCAAGTAACTTGTTGAATAAAACAACTATAGT
ATATGCAATCACTTTTGTGCTGACTCAGTCTTGTATTTTGCAGTTCTATT
CTGGTAGCAATCTTGATTTATTATCAACTCATGCTGTTCTAGAGTTCTAG
TTACATTTATGCTCTTGATTGATGCATGTTTTCTAATCTTTATGCACTGA
TATGTTTATATTTTTCTGATGCTGACTGTAATATGCACAATTTGCTTGTG
GTTTTGTGTTTATTTGTAGTGTTGGGCGATGTCTCATCTAATCTCTTCTC
AGTATCTTTAATTTATAATCAGCTTGTACCTTACTCTTTTCCTCTTAAAA
TCTTGTAGCCAATCTCCTTTAGTTTATCAAAAATGCCGCAAAATGACAAC
ATTCGCTTCATCTCATCTTCAATCAAAATCCCTTGTGAAACAATGCCGCA
AAAGGCTGACATTCAATTCACATTACCTTCCATGAAAATTTCTTCTTTTC
GATCTTCCCATTACCTTCGACGAAAGCACCATCACATTATCTCTCCCTTT
GCTTCAGTCCAATTCTCCAACCATAACTCAGTTCTGCAATTCATTGATTC
TGTGAAAACCCCTTTTACCCAATTGGTTGATTTTGTCAAAACCCCATTCA
CCCAGTTTGTTAATTCACTCCAACCTTCAAGTAATATATTCAATTCAACC
AAAAATCACAGCAAAAGAAATCCATTTCACTTAAAGTCCTTGCTCTTATC
TTCTGCTTCCTTAGCTCTGACAGGCCCCGATGAGGGGAGTCTAATGACTC
CGCCAAAGATTGGGAGCCAATCTGCAAGTCAGAATGATGAAGAACGGGTT
TTGATTAGTGAGGTATTTGTCAGAAATAAAGACGGCGAGGAACTTGAAAG
GAAGGATTTAGAGAATGAAGCCATGACTGCACTAAAAACCTGCAGGCCAA
ATTCCGCGCTTACGATTCACGAAGTTCAGGAAGATGTGCACAGAATTATT
GGCAGCGGGTATTTTTCTTCTTGTATGCCTGTTGCTGTAGATACAAGAGA
TGGTATTCGTTTAGTGTTTCAGGTATGATGGTTACACAATTATATATTTG
TATATGATCTGGCTGTTCAGTATTATGTTATATGATTAAATGTGTGAAGT
AGACATATAAGTTGAGATGGTTTAAGTATCGTGTTATTCTAAAATTGCAG
GGAAGATAAACTTGTGTGGCCGTGGCATAAATGATAATTTCAGCAACTAA
TATTTAAGCAACTTGAGTTTCAGTACACTGTTGTACATCTATATATCATA
CATGACAACTAGTTATTTGCAAGAGGGGTAAGAGACTAGACCAAATTTTA
GGATACTTAGAGAATTTAGGGAGACAAGTGGAGAATTAGGATAGAAGAGA
TTGAACGTAGAGAATATAGAAACTGGAGGGAGAAACAGTGAGATAGAGCG
TGTGATAGGAAGGGAGAAAAAGAAAGGGGAGGGGTGGGGAGGATAAGAAC
ATTTCATCATGCTGTGGACGGAAGTTCTTTCTTCTTATATACCATGATGG
ACCTTAAACCCTTAACTTCACCTCCTAACTTGGCCATTACTCTACATTTT
CCACAACATTTCCCTCCCAAACAGCCTAGATGAGCCTACTGGAAATTTTA
AAAAACGGAAACCCAGCTAGCCTCATTTCCCTACTTGTTATGCAGCGGAA
GATCATAAAAAATGTTTTAGAAAGGCCCGAGGAAGGATGCACTGATGCAG
AATGTTTTTTTCTGAAAATAAAACCTTACAGTAACACTGAGGCGAAGCCA
GTGGATGGTAGGAGGTGTCGTGGATGGTAGAAGGTGTCTCTTGTAATTGA
TTGCAGGTTCTTTGTGAAAGAATTATCTAAAGCTGGTTGAGGAATAAAGA
TTTTGAAATTATATGAAAGTGAGGAATAACGAGTTTGAGATTATATGAAA
GTTATGCAGAATATATATTTTTCCAAAGATCATGGTACCTTACCTACATG
CTTGGTGGTTCATGATGAATATGAAGTGGGCTTATCTGCAATACCTGTTT
GTGAAAACCCTTCTACCTGATTGTGATGACCCATATGACTTAGAGCCGGC
TAGAATAGGCAAGCAGCAAGCTGATACTGAGATTTCTTGAAATATCACCT
CCAGGCTTGTTATGAGATATATGGCAATATCAGTCTGAGCTGAGGCTATT
GGTAAACACCTGGAATTCCCGTTAACATGACTGCAACTTTTAAAGGTCTC
CTACTGTTATAATCTTTTAATACTCTTCTTGAAGTTAGCCATGTGAATTG
TGTACTCCCACTGAGATGCCTTTATTTTCATGGGTTCTTGTTGCATTTCA
TGCTACCAGGTCCCAATACTTGGCATTCTCTTTAACATGACTCCAACTTG
TGATGCTCTCCCATTGTTATAATTCTTTAATCTTCTCCATGAAGTTAACC
ATGTCATACCAGTATACCACCATCGAGCTGCCTTTATTTTTATGGGCCCT
TGTTGCATTTAATGCTATTTAGGACCCAGTCTATTCGCCTCTTCTTCATT
GAGTACCTACAAAAAGTACAGGTCATACTAATATGGTTGAGGATTTCCTG
CTGCATATATAAAGGGCCAGCAGCTCAAGTCCATAGATCCATCCATCCTG
CTTGCTGCTCCTCTGGGGTGTAGTGGCTAACGAGCTCCAGTTTTCAGAAA
TATAGCTTCATCTTTTACTTTCTGGCATGCATTGCAGGCCATAGGTTTTT
AAACTTCAAAGTTACCCTAATATCTATCTGTGGATAGATATTCTGTTATC
TGCCGAGAAAGAACTGTGTGGCAGTCCTAGTTTCAGTTAATGTGCCCAGC
ACTTTAGTTGTAGTCCTATTCCTATAACACAATGACAGTTCATCTGTTCA
ACTGCAAGATAATTTTTATGTGGATTACGTAACATTCTCAGACATTCCGG
CTTACACCTGTCTAGACCTGCAGTATATATAAAGATAACAAATTAAGTAG
ACCTGTTACCTTTTTTATTCCTATTTTGGCTGATGACTGATAAGAAATCC
TAATATAAGTTGTATATAATATATGCATATATCATTTTGTTCTTATATGA
TTCTCAATGCATATCGTGCATATTTCATTTTGTTCTCAAAAGATTCTTAA
TGCATATCGGGTAAACAACAGTGCTAGCATTACTTTTGTTGATGTTTAGG
ACGATTTTACGGATATCGGGTAAGCAACTATGCTAGCTTAACTTTTATTG
ATGTTTAGTATGATTCTACACTTATCTACTTCTGTAACGGAAAGATTAAA
ATTTGCAAGTCTTCTGTTGAAAGGTAGAACCAAACCAAGAATTCCGAGGT
TTAGTATGTGAAGGAGCAAATGCTCTTCCATCAAAGTTTGTGGAAGATGC
CTTTCGCGGTGGATATGGTACGTTATAAAGTTTTGGTTCTCTGAACATGC
ATATTGAATGTGTATATTGTATAATATATACACTTATCCAGTTTGGGGGA
TACATACAATTTCTGTGGCCACTGATATGAGACCTGGTGCTGTTTGGTCC
CAAGTTATGCAGGAAAAATAGTCAACATAAGGCGTTTGAATGATGTAATT
GACTCTATCAATGGTTGGTACATGGATCGAGGTCTTTTTGGATTGGTTCG
TTGTACTATTTCACCGCCTGTCAAATATATCACACTATTTGATTGAAATA
TCCCTATTAGTAACTAATTGTATATTGTTCATTTTTTTAGGTCTCTGGCG
TTGAGATATTTTCAGGGGGTATAATCAGGTTACAAGTTTCCGAAGCAGAG
GTTAATGATATATCCATACGTTTTCGTCGCAAGACGTAAGAACCTTCTTG
CTATCTTATACATTGTTTAGGTACTGTGTTACTGTATATATTTTTGAACT
TCATGACCACCAACATGCTTCCCCATATTCAGTGGCGAGCCAACTGTAGG
GAAGACAAGGCCAGAAACTATACTTCGCCAACTAACTACGAAAAAGGGGC
AGGTATATATTTGACTTAAATGATTGATTCTTGCAAGCACAATAAAGAAA
GGAACCCGCTTATATGATTGTATAAATTAACCTGAAAGTGTAATATAAAT
CTTTCCAAAAATATGACAAGTACAACTTATCATATCAAAATAGTTGTCGT
ATCTGCCTGGTTCTACTTAGCTCTAGAATATCATCCTTGTGTTAAAGCAA
TTTGACTATTGCTGTTCGAAAAAACATTTGGGTAGGGCTGTCAAACAAAT
ATTTTGGAAATGATATACGAATCCATATCCGGACCGGATCTGGATATACC
TTAATATATTTTTAATTTAGGTAGAATTTTTTTAAGTTGATGGTGTAACA
ACTTGATAATTTTGTTTAAAAAATTGAGTGTTAAAATGTGATATATATTT
ATTATTGTATATTAATAACTCAGATCATATTTTTTCTTTTTTAAAATAAT
CTATGCATTTAAGTATATCTCAGAAAAAATATATTAATTAATGGACAAAA
ACATTGCTCATAGTTTATTATAATGATAAATATTATATTTTTATTTATTT
TCAGATTCAGATTTAATTTTTTTGGCTTTATTTTTGAATTCAGATATTAT
TGGATACAAATTAGTTTTTATTTGTATTTGTATCCAAAATTGTCAGATTT
GGATATAAATAATATCCGCTTTATTTACATACCGATAATATCCACATTAC
TTCGAATACGAATACAGACAAATGGATATCAAAAATTTCAAATCATGTTG
ACTACCACGTATAGGGATTTTGTCTTCTATCAGTGAACAACTGAGTTGCT
ATACAAGGATGAATATATATATGCGTGTGTGTGTGTGTACATATGTATGT
CCCTATATGATCCTCTGCCCATTAACAAACTATATGCTGAAGCCTGAAGT
TCACATTATACTTGCTAATTTGCTGAATTGCTGTCTTTTACCTATCTGCT
TGTTTCTATTTTACCAGTCCAATATGAGTTGTCCAGATGAAGGATCTATG
ACCCTAATTAGATATCTGTGTTGCAAGGATAATTCAGTTTTTACTTGCAA
CCTATATGCCAATAGTAAGGATTTCCTTTTGTTACATCTAGCCATTCCTT
CCAAGAGGTTACTTCTCTAACCTGTCAATATTGGGCGAATAGTTTCTGTA
GCAGATATTGTATTATCGTTTCTAATGTGTTTTCTGAATGTTCTTGATTC
TGAAATCACATTCATTAACTTTGTTCTTTTTAATCCCATTTGGTGCAATC
TATGGGAAGTTTTCCGCTTTTGTTATAAGAAGATTGTTGGCCAACTCAGC
ATACTGACATGATCTCTATCTGTAACTGTATATACTTATCTAGGTCTACA
GTATGCTTCAAGGGAAAAGAGATGTGGATACTGTGCTAACAATGGGTATA
ATGGAAGATGTTAGTATTGTTCCACAGCCTGCTGGAGGTAATATGAATTA
CTGCATGCATTTTATGCCCATGTGTATAGATCCCCATACTTCTATTGGCA
TACCATCTGTACTTGTTGAATTATTTTTTGTTCCTATTTCAGATACAGGC
AAGGTTGATTTAACAATGAATGTGGTAGAACGTCAAAGTCATGGCATATC
TGCTGGGGGTGGAATATCAAGTGGGTGCGTAATTTTTTAGGGCACATGGT
CCCAAAGCGATTGAAGAATTGTTTGTCTTAAATTTTAAATAATTTTCAAT
TGCTGGTTGTAACATGGATAATATTTGTTTTTTTTTATGTCTTTCTGTGG
GTGAGTTATTTTTCTAGGGCACATGGTCCCAAAGCGATTGAAGAATTGTT
TGTCTTAAATTTTAAATTATTTTCAATTGCTGGTTGTATCATGGATAATA
TTTGTTTTTTTTGTCTTTCTGTGGCAGGATCGCAAATGGCCCTCTTGCAG
GATTAATTGGCAGGTACATATCACTACACTATGAGATTAGAGTGCTGTTG
TTTTGAATTTGCCTACTGCATCTGTGATATTAATATTACCTTACCCTCTT
TTTAGGACCATGCTAAGCAACTCGATAAGCTTTAATTACCAAGTTTTTGT
GTCCATGTTTCGCCAGACTTCTGTTGTCCACTTTGTATTTAAATATCTGC
CGTTAATGTGTTTTTCATTGTTGCGCATACTGCCTAAATGTTTCATGTTT
GGTTAATGCATTATGTAAAAGGTCACCTGTGAATGTAACATTGTATTGCC
AGAAATGGTATAATCAACTTTTCAAATGTTAAAATAAATAATATGAAAGT
TGTTTAATAGTCAGATATGATGCAACCACATGCTTTTTAGATATGTTTAT
TGACAACCGCATCATCTTTCTTAAGCTCTAATTTAAGAGTAAAAGCAATT
ACATGAACATTGATACATTCAAGCGCAAGGGTCATTCCTTGTATGTGTCT
GACATGGATTATTCACCATTTAACTTTAAAGTCCATGTAAAGTAGGCCTG
TAACCATTTTTTTTCCTGCAATGGGCTGAATGCATAATACATTTTCATAT
TATCATCCTTGTTACTGAAATGCCATTTGCTTTTACCCCATGGATACAGT
TGTGCAATTCATCATAGAAATCTTTTTGGAAGAAATCAAAAGCTTAATCT
CTCACTTGAGAGGGGCCAAGTTGATTCACTTTTTAGATTAAACTACACAG
ACCCATGGATTGAAGGAGACGATAAGAGAACATCAAGATCAATCATGGTT
CAGGTAATCTGAGATATAAATATTTGATATAAATTCTTGTTATTGTTGAG
AGGAATAATCTGTGAATACTAATTGTATTTTCATTGCCGAATCAGAATTC
GAAAACCCCTGGCAGTCTTGTTTACTCCCAGCCAGATGGTAATATACTTA
CCATAGGCCGCGTCACAGCTGGCATTGAATATAGCCGTCCCTTTAGACCA
AATTGGAGTGGAACTGCAGGAGTTACTTTTCAGGTAATATTTTAGATTTG
TTTGTTAATTTATAAAAATGTTCTTTTTACTCAGGGGGGCCTTCCCTATA
TTAAGGTACTGATGTATCATGTATGTGGTTGGCAATTCAATGGAACTACT
GAAGTATGGTAGTATGGGGTTATCTTGTTTTCATAAAGTAAATGAAATTT
GGATTCACACAAATCACAATTTTTCTGAGCACGAGTTGGTACCATGGAAC
AAACAGCCATTGTTCACGTGTTAGATATTATATACCTTGGAGGGGCTTGA
GCCCTGTACTAGTATCACTTCTAATAACGCTTTCCCATGTTCTAAACTCA
CAGCGTGCTGGTGCTCGTGATGATAGAGGAAATCCAATCATAAGGGATTT
CTACAGCAGTCCACTCACTGCAAGGTATCCAATTTTGAACCTATATGCTT
GTATATTGGTTGCTAGATTTTTGGTTGGTGACTATGTCATTGCTGCACTA
TATATCATTTTTTTAATCATTGTTTCAGCGGTAATGCCTATGACAAAATG
TTACTTGCTAAACTTGAGAGTGTATACACTGGTTCTGGTGGCCCTGGCTC
TTCGATGGTTAGTTTTTGTGGTTAATGTTAGACTTAGACATTGTGTTTTG
CATCCTTATGTTGCTGTCATTGCTCTCATATTTACAGTTGGTACTAAATA
TGGAGCAAGGGCTTCCTGTATGGACAGAATGGTTAGCTTTTAACAGAGTC
ACTGCTCGTGCACGAAAAGGATTTGTAGCTGGTCCTGTATCCTTCTCATT
TGGGTAAGATGCCTCCTTTTTTTAAGTATTACAGGTCTTAGGTTGAGGTT
GGTACAGTCTGTCCTATTTTCCTGACTGGAAAAAATGAATTCTCTGGTGC
AATTTTTCTTTCTCTCTTATGTGATATCCGGTACTTATGTTTCTTGATAA
ACGAGTGCAGGTGTCTTTTTGCTAGTGTCACCTTTTATTTTCATATTATT
CATTCCATGTGCAGAGCAATTTTTTGGATTGTTATCATATTTAGAAGTAT
TTATTTGCAGTTTGTCTGGTGGCCACATGGTGGGTAATTTTCCTCCTCAT
GAAGCATTTCCCATTGGTGGAACTAACAGTGTGAGAGGATACGAAGAGGG
GGCAATTGGATCTGGTCGTTCGCATGTGGTTGGCTCCGGAGAAATGTCTT
TTCCCCTGGTAGGTGTTCTTAGACTCTCCCATCCCCAACACTGAAAAGCA
ACAATGCCTATATACTGAGATAGACCTATGACTTGCAGATTTATAATCAC
CAATTATTAAAAATAAAAATAAAAATTATTGTAGTAGTTATAAGAAATTA
TTACTTAGTTTTTTTAAGTCACAAAGGAGTAAGTTCTGTTCCCCGACATA
TTTTTCCTCATCAAATTTCCTATCACAAAAGTCACATTCCCAATCTCTTA
GATTTCCTTGGATGCATGTTAAGCTGATAAATAATGTTGATACTTAGGCT
GTAGATAGCAATTAGCAGACCTTAAAGTTATTTGAGCTGATAATTAGGGA
GTTCTAATTATGGTGAAATAAACATGGCCAAGGATAGTTGGAGTGCATAT
TTTGATCTACGTAATCATTTTTTATGGATTCATACAACTTCCTTACTAAA
ATTTATATTATGATTTTATTGTCAATTGTCATCATATGTTTGCAGCTGAA
GCCTTTAGAAGGGGTGGTATTTGCCGATTGTGGCACTGATCTTGGATCTG
CCTCGGCGGTACCTGGTATGCCATTTTTTTTTAATGGTTTGAAATAGTTG
CAACTTGCAACCTCTTGGATGTCATGGTTGTCATCATGTGTAGGAATTGT
TATTGGTCAATAAATGTGTTACTTCTGTACAGGCGATCCTGCTGGAGCAC
GACTAAAGCCTGGTAATGGTTATGGTTATGGAGTAGGTGTGCGTTTGGAG
TCTCCATTTGGACCTTTGCGTCTGGAATATGCCTTAAATGATCACGGAAC
AGGGAGGTTTCATTTTGGTGTCGGTTACAGAAATTGATGAGTAGTCTTTA
TACAATTTCTGTGTATTTTTTGTGATGAGTTAGAGGTTAATTAGTTAGTT
TTACATTTATCGTGCCAATGGAGTGCAATGCCTCGATAGATTAGTTAGAA
AATAATGACATATTGAGCCAA

Sequence Length:

10071

Sequence Checksum:

74610b5cf7ac1fa77eec4863aa0a2fd8

View location in JBrowse:

DCARv2_Chr5:34817680..34827750-

Cds:

>DCAR_018962cds ATGCCGCAAAATGACAACATTCGCTTCATCTCATCTTCAATCAAAATCCC TTGTGAAACAATGCCGCAAAAGGCTGACATTCAATTCACATTACCTTCCA TGAAAATTTCTTCTTTTCGATCTTCCCATTACCTTCGACGAAAGCACCAT CACATTATCTCTCCCTTTGCTTCAGTCCAATTCTCCAACCATAACTCAGT TCTGCAATTCATTGATTCTGTGAAAACCCCTTTTACCCAATTGGTTGATT TTGTCAAAACCCCATTCACCCAGTTTGTTAATTCACTCCAACCTTCAAGT AATATATTCAATTCAACCAAAAATCACAGCAAAAGAAATCCATTTCACTT AAAGTCCTTGCTCTTATCTTCTGCTTCCTTAGCTCTGACAGGCCCCGATG AGGGGAGTCTAATGACTCCGCCAAAGATTGGGAGCCAATCTGCAAGTCAG AATGATGAAGAACGGGTTTTGATTAGTGAGGTATTTGTCAGAAATAAAGA CGGCGAGGAACTTGAAAGGAAGGATTTAGAGAATGAAGCCATGACTGCAC TAAAAACCTGCAGGCCAAATTCCGCGCTTACGATTCACGAAGTTCAGGAA GATGTGCACAGAATTATTGGCAGCGGGTATTTTTCTTCTTGTATGCCTGT TGCTGTAGATACAAGAGATGGTATTCGTTTAGTGTTTCAGGTAGAACCAA ACCAAGAATTCCGAGGTTTAGTATGTGAAGGAGCAAATGCTCTTCCATCA AAGTTTGTGGAAGATGCCTTTCGCGGTGGATATGGAAAAATAGTCAACAT AAGGCGTTTGAATGATGTAATTGACTCTATCAATGGTTGGTACATGGATC GAGGTCTTTTTGGATTGGTCTCTGGCGTTGAGATATTTTCAGGGGGTATA ATCAGGTTACAAGTTTCCGAAGCAGAGGTTAATGATATATCCATACGTTT TCGTCGCAAGACTGGCGAGCCAACTGTAGGGAAGACAAGGCCAGAAACTA TACTTCGCCAACTAACTACGAAAAAGGGGCAGGTCTACAGTATGCTTCAA GGGAAAAGAGATGTGGATACTGTGCTAACAATGGGTATAATGGAAGATGT TAGTATTGTTCCACAGCCTGCTGGAGATACAGGCAAGGTTGATTTAACAA TGAATGTGGTAGAACGTCAAAGTCATGGCATATCTGCTGGGGGTGGAATA TCAAGTGGGATCGCAAATGGCCCTCTTGCAGGATTAATTGGCAGTTGTGC AATTCATCATAGAAATCTTTTTGGAAGAAATCAAAAGCTTAATCTCTCAC TTGAGAGGGGCCAAGTTGATTCACTTTTTAGATTAAACTACACAGACCCA TGGATTGAAGGAGACGATAAGAGAACATCAAGATCAATCATGGTTCAGAA TTCGAAAACCCCTGGCAGTCTTGTTTACTCCCAGCCAGATGGTAATATAC TTACCATAGGCCGCGTCACAGCTGGCATTGAATATAGCCGTCCCTTTAGA CCAAATTGGAGTGGAACTGCAGGAGTTACTTTTCAGCGTGCTGGTGCTCG TGATGATAGAGGAAATCCAATCATAAGGGATTTCTACAGCAGTCCACTCA CTGCAAGCGGTAATGCCTATGACAAAATGTTACTTGCTAAACTTGAGAGT GTATACACTGGTTCTGGTGGCCCTGGCTCTTCGATGTTGGTACTAAATAT GGAGCAAGGGCTTCCTGTATGGACAGAATGGTTAGCTTTTAACAGAGTCA CTGCTCGTGCACGAAAAGGATTTGTAGCTGGTCCTGTATCCTTCTCATTT GGTTTGTCTGGTGGCCACATGGTGGGTAATTTTCCTCCTCATGAAGCATT TCCCATTGGTGGAACTAACAGTGTGAGAGGATACGAAGAGGGGGCAATTG GATCTGGTCGTTCGCATGTGGTTGGCTCCGGAGAAATGTCTTTTCCCCTG CTGAAGCCTTTAGAAGGGGTGGTATTTGCCGATTGTGGCACTGATCTTGG ATCTGCCTCGGCGGTACCTGGCGATCCTGCTGGAGCACGACTAAAGCCTG GTAATGGTTATGGTTATGGAGTAGGTGTGCGTTTGGAGTCTCCATTTGGA CCTTTGCGTCTGGAATATGCCTTAAATGATCACGGAACAGGGAGGTTTCA TTTTGGTGTCGGTTACAGAAATTGA

Pep:

>DCAR_018962pep MPQNDNIRFISSSIKIPCETMPQKADIQFTLPSMKISSFRSSHYLRRKHH HIISPFASVQFSNHNSVLQFIDSVKTPFTQLVDFVKTPFTQFVNSLQPSS NIFNSTKNHSKRNPFHLKSLLLSSASLALTGPDEGSLMTPPKIGSQSASQ NDEERVLISEVFVRNKDGEELERKDLENEAMTALKTCRPNSALTIHEVQE DVHRIIGSGYFSSCMPVAVDTRDGIRLVFQVEPNQEFRGLVCEGANALPS KFVEDAFRGGYGKIVNIRRLNDVIDSINGWYMDRGLFGLVSGVEIFSGGI IRLQVSEAEVNDISIRFRRKTGEPTVGKTRPETILRQLTTKKGQVYSMLQ GKRDVDTVLTMGIMEDVSIVPQPAGDTGKVDLTMNVVERQSHGISAGGGI SSGIANGPLAGLIGSCAIHHRNLFGRNQKLNLSLERGQVDSLFRLNYTDP WIEGDDKRTSRSIMVQNSKTPGSLVYSQPDGNILTIGRVTAGIEYSRPFR PNWSGTAGVTFQRAGARDDRGNPIIRDFYSSPLTASGNAYDKMLLAKLES VYTGSGGPGSSMLVLNMEQGLPVWTEWLAFNRVTARARKGFVAGPVSFSF GLSGGHMVGNFPPHEAFPIGGTNSVRGYEEGAIGSGRSHVVGSGEMSFPL LKPLEGVVFADCGTDLGSASAVPGDPAGARLKPGNGYGYGVGVRLESPFG PLRLEYALNDHGTGRFHFGVGYRN*