Resource Type:
Gene
Organism:
Name:
DCAR_019157
Identifier:
DCAR_019157.gene
Locus Tag:
DCAR_019157
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_019157, is a part of gene, DCAR_019157. |
| The genetic_marker, MK003753 K1197, is located in gene, DCAR_019157. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_019157 | DCAR_019157.mRNA | mRNA | DCARv2_Chr5:36715898..36731300 |
Sequence:
ATGGCGTGGCTCCGATCGGCGATGAATAAGGCGGTGGAGGTAGGGAATAA
GAGCAATCTCACCCGCGCCATGAAGAATTACACCGATTCCGTTGTTCACC
AAGCCGGTCAAGCCGTTGCTGAGGGCGCTAAGCTTTTGCAAGATCGTATC
GTAACGCCTCTTCCTCTTCTCCTCTTATTTGTATTCTGTTACTCAATTAA
TTGGATATTTGTTGTTATTTATGAATTTGTTTTCGCAATTGAATCAACTC
ATTTAGTTGACTCGTAAGGCTAGTTGCTAGGGCGTGATTAGTAATTAAGA
GTAATCTAGTGACCGCACTCGTAGTCCCTACATTCACATTCTTCGTCTTT
AGTCGAAATAGTATACAGTCATCCTCTAGTGAAAACTGAAGACTGGTGAT
TTGTATTTATAATTATGCATCTGATCAAATAGAAACCAATCAAATAGAAA
CTAGATAGAGACTAAGAGAAACTCCCTATGTGACATCACCCATCACCCAG
CCGGGGCCCACCCTCGGACTCAATCCACCTCGGTCTCACCAAAATCTCAA
CCAGGCCACAAACTTTCCCTGCACACCTTAAGCACCGGCAAACAGGCCCA
AGAGCCCCCACTATGTCACACTCCCCACCCCGCCCCCCCAGGCCCACCTA
GGGGTCCATCTCCGGACCCCACAACCCTTTTCATTTTCCTTTTATAGCAT
TGGTTTCTATTTAACTGATTTCTGTTTCTATTGGAGTGTGACCCTAATTA
ATTATATATTCAGGGTTAGGAAATACCTTAATGTCGCAACCTTAGAACTT
GGTTATATATTCTTATATTGGAACAGGGCGCCTTTTATGTAAATTATTAC
ACTATCAGTTATATTATTTCATAGTTTCTGCACTATTATTTTTTATATTT
CTTATAGGAGTGAAAAACGTATTGTGTTATGTACAAATTCATCTTTTTAG
AAAAATGTCACGTAATTTAGGAAGTTAATAACCGTGTACCGGAAATGTAA
ACCATATTCAATAGTTCATCAAAAAGTATCATGGCCTTCAGCAGAAGCAA
CCACATTGTGTATTGCATAAGAACGAAAAATATGAGTTGTTGAATAAACA
AACATCTGATGCTGACGTTGGTTCTAAGTTCTAATTTAAACTCAGTTCTA
AGTTCATCTTGATCCTATATATGTATTATTATGTATTAAACAACCATTTC
TATACAAAGCCAAATTAGTTTATTAGTGTGATGTATTAATTTTGTCAAGT
CTTATGTTCAGCGAGGAAGGACTGTCTGTATGTTAAAGACCTAAGCGTAC
TTGTTAAGCATAAGTGGGTCACATGTTTTTTGTCGTTAAGAAGGTAAAAC
CGGTGTCAAATCACAAGGTTTTTGTAAAATTAATATTTGCAGTTTAGCAT
GCTGTTATTGCGGTTTAAAATATGATTGTACTTCCCAAAATGGAAACCAA
ATTGATAAATAATAAGCCGCAGAAAAGGGACTCAAGTTTGTGTGGCGTGT
GGGATTAAACAATTACGAAAGTTCGAAGAAGGCACAACTAATTTTTGTGG
AATAAATTTTCTTTTACTGAACCTTGACATAGTAATAGCAACACCACAAC
ATAGGCTTTATAGTAACTCAACAAGCACACCTTTGTCGAAAAATCTTTTT
TTTATCAAATGGATTCCTTATGTCATTTAGTAAATGTAGCCTGCTTTATC
TGACTCGTGAATTACTAGATGAAGTTTTATACTGTATATGGACACTTAAA
TTGATATGTTTCCCAACAACTATAGGGAGCCAAGAGTTTTAAAAGTTTTA
AGCAGACGGTTAAAAGATTAGAAGAAGCTTCTGTATCTTTTAGGGGCCAA
GAAAGGACCCTGCTGATAAAAAAATGGTTGATAGCTCTCAAAGAAACTGA
GGAATATAAAGAAAGGAGTCTCGAACAGCATCAACCTTCTGATGAAGTGA
AGGAAAATCAGAAAAAACCGTCTATAGTGAGTATCCTTTTATCTCAATTA
ATTTTGCAGTTCCTGATTTTGCCAATACCTTCAGTCTCTGTTCTGTTGCC
TGACTAATATGCTAATCAGTATCGCTTGTCAGGTAAGGTATGATTCTTTT
GTTTTGTTACCATCTTTATTGTTAGATTAAATTACGTTATAGTATCTTAT
AGCTGGTCCAGTATTTAGAACCAGACTTGTTTCTTTGGTGATTTAGTATG
TAAAGATCATTATACGGCCTACAATATTTCATTTTCTATTTATAAAGAAA
GAAGTTTACGAGTTATTGTCAGTAACAAAGGTTTGCCTAGTTCCTTCCTC
ATTATTTGTTATTTTTTCGGGGGTTGGGTTAGCTTGACTAGGGTCGTTGG
TCCTCAAGAATTTTAAGATCCAATGTTCAGAAGGGTTAGTGGAAGTTAGT
ATCATCTTCAACAAAATTATATTGGCCAGAGAACTGCAGTAGATTTTATT
TTTTGTATCAAACTTTCATAGAACTTAGAATAGGGACCTCTTATATTATC
TATTCTGCTCAGCCTCTAATACTTTTTTATAAGATTTGAAAATTTCTGAA
GATAAATCTATATCTTGATGAAGTCTTTTGATTTATTCTTTGCTATTGAC
TACAGGTTTTATATTTTGACTATGACATGGGTGGTGAGCCACTGAATTTT
CGTGATGTTTTTCTCTATAGTCAAGCTTTGGAGGGAATCACAATATCAAT
GGTACAAGAACTATGTTTTGTGTTTACAGTTAGTATCTTCTAAATAGAAG
CAGAATGTTTACAATATTTGTGTTAATCTGACAATATTTAAAATGTTTGT
AAAACAGAAAGGTCTTCGAGTTAAGTTGTGTAATAGTAAATCTAGCAATG
ATTATCATGCTCTAGTAATTTCCATAATGTATCGTTTCCAGAAGTGCGGC
GTAAAATGTAAATGCAACCGTAAATCATAATTTTGTCTCATGAATGCAAT
GGCTTTTGTCGCTTTGATCAGAAGAATAGCGTACTAAAATAAAGTACATA
ACCTTGAAATAGCTGAAGTTATGCCATCTTGGGTTCAGCACTGATATTTT
ATTTATTTGTTTCAGATTCTTGAACCACCAAATGAGGAAGAAGTTCCTCT
ACTCCTACTGCTCTTTGGGTGAGTTTTTTTTTTTTTTTAGTATTATAATT
GGTATAGTTATCTGCATCTGGTTTTTGGTCTTATAACTTTAAATTTTCTA
ATTGAGCCTATTTATCTGAAAACTTAAACAAAACACATACTTAAACATTT
AGGTTCTGTCTTACTGGTGGGAAAGAATTTCATCATGCAATAGTGAGCAG
TATTCAGGACCTGTCAAATGCCTTTTCTAGCTACAAAGATGAAGTGCTGG
TAAAATTTATTGAACCACTATATTCTAAAAATGTTATCATATGACATGCA
AATTGAGGGGAGTGTTTATGTTAATGCTTACTGACAATTGCAGCTTACAC
TATAGTAATAGATAGGCTTTTTTTTTTTCCTGACAGAAAAAGGCAGATGA
CTTATTGAGTTTTATCTTTCCCAGGTCAAGCGGGAGGAACTTCTTCAGTT
TGCACAAAGTGCTATATCAGGATTAAAAATGAATGCCGATATTGGAAGGT
TAAAGCCGATCCTATATTTTAGATTCTCTATTCCTCCTAGGTTATAACAG
GCATGACTTTTGGACCCATACTACAGTATTTTCAGCGTGAATTATTACAT
AAAAGGATATGTTCTTCGTCGTCTTGTGTGCCATATGTTGATTAAACCAT
TGTCAGCTGAGGAATCTTTTGTTTAGTCACTGTTAAATGTTTTTTTTTTT
GACAAAATACACTTGCTCGTATCGATATACGCCAATACTCCGAGGAGTTT
CTTTCATTCAGAAAAGCTTATCATCCAACCGAAAGACATGAAAATGTCTC
CGGAAGCTTAGACAATAAGACCTTAATGTCCGAAAAGAAAACGTCCCAAC
TTGTAGACCACGCCACCTGAAACAAATACGATCCATTAATAACAAGAAAA
TTAATAATAACAAATTTAATAATTAAAATCAGTATAGATCATCAAAAGAA
GGTACAAGTAGAAGAAATGATAAATATAAAAATAATTTGACAAAAAGGAG
ATAATATAAGAAAAAAACAGAAAAAAATATATCTAACCAAAGGGAGACCC
TTTGGCTAGATATATAACAAGATAAATAATTACTAAGAATAATTAATAAA
ATAAGTATTAAAATAAAACTATAATTTTCAAAATAATATCCAAAATTATA
AATAACAAATTAAATTAAAAGTAATTAACAAGCCAACAAAATGGCACCAA
ATTGCCGATTATTAGGCCAAGAATATACGCCATCAATTATGGCCACCCAT
ATACGGTACAAACAAAACCATTAATCAAGACTGCAAGTAATACACACCGT
TAACAAATTGCATTAAACTCTAATCAATGAGAATTAAAGCACTTAGAGCA
TATAATTAAAAGCAATTACTCAAGAAAAAATAAAATTCAAAATCAGCAAC
AATCAAGTGAGTCAACTTACCATTTAAAAATTAATTATGCAATTATTACT
ATTAAAGCCAATTCAATACAATAAAACATGGCAAGAAACTTACCAAATTT
ACGGAGCAAATCATGCAAAAAAAATTATTCAATAATAATCTTTTTCAAAA
ACACATGACTAATTGAAAGCACCATCTCATCATCACCACATTGGACCACC
ATAATCTCATCATTGTCACTAACAGCAACAACAACGATGAACAAATTCTA
ACCCTTGGAAGCTTAGAAAACATCATTGCAAATAAAACTTGTGACTCAAA
AAATTGATAAGAAGACAACATATTAAGCACATAATATACAGAATATGTGA
CAAAATTACGACATAAAACAACACCTAGAACAATTGATAACCGCGCACAA
ATACAAGTTTAAAGAGAAAATCTGAGTTTTTACATTGACAATTTTAAAAA
CATAAAAATTATATATACTAAGAAAACAAATAGTTAAAAATTATATATAC
TAAGAAAACAAATAGTCATATAAACATGTAAATTAAGAATTGGGGAGAGN
AGAAAATAATATACAGAATACGTGACAAAATTACGACACAAAACAACACC
TACAACAATTGATAACCGCGCACAAAAACAAGTTTAACGAGAAAATCTGA
GTTTTAACGTCGACATTTTTTAAAACATAAAATATTATATACACTAAAAA
ACAAATAGTCATATAAACATGCAAATTAAGAATTGGGGGGAGTACACCTT
TATTTTTGAATGTCGAAATCTTGACATGTAGATCCGTAAATAAGCTCTAG
CACGACGATTAGAAGACGTGTGTATGATGGTTGTCGGTAAAGAGTCATAG
AGAATTGATGAATCTAAAGTGACCACATCAAAGAAACAAAAAATAGACTG
TCGACACCAAAATATTTTCAAAACCAGATACGATCTTGAACAAGATACTT
TATGTTGGGTGTGTTTGTATATGATTCATCTCGAGTCGCGACTCACTGGC
TAGGGTTTTGGAGAGCGATTATGAAGATTAGTGGAGACGCGAGTTTAGCC
GTATTATAATGCATGTTTTTGATTTACTGTTAAATGTTTTTGAATATATA
TTTTAATCCCTTTATCATATACATAATAAGAACATCACTGTATATATAAA
TATAGTATAATATTGTGGAACCAATTCTAGCCCCAATAGTAGCTATTGGG
TTCATTTGCAAGTTGGGTTTCTACCGACTGCGATATTAATTTACAGATAT
TACACTGGTTAAAAAAAATGAGTTTGAGTTTTTGTGTTCATTGATTTGAT
TTCTCTTCACAGGATAGATGCTGAAGCTTCTTTACTTAAGAAAAAGCTTG
ATCAAATAGTAGCAAGATCAGAGGCTAAAGGTGAAAGCCATGAAACAGCC
TCTAAAGAAACAACTGTTTCTACAATAGAGGTGAACCTGGTTGCATCTGT
TTTTGTTTTTTTAGCTCTATGAATATACTGTAGAGTGAAGTTCACATAGT
TACCTGCTTAATTCTCACAGACTTTTGAGTTTAGACCATTCATTTTGCTT
TGTATTTGAGTGATCCCTGCGAGTTGCCCAAATTTATGCTCATTCAGCAC
CACTTTTTGGTAGCCAACTCAGTAATAATTTCCTTGCATCAATATCTGTA
ATACATGCATTTTATTTGGATAAGATCTTATAAGCATATAATTTTGGATA
AGATAACCCCTCAAACTCAGGCCTGTTAAATTTTGCTCATGTATATTAAT
TATTGACAATTTAATTATTTAGTTCTTTAAAGCTGGGCAAATGGTGTTCT
ACTCCTTAGATTTGAAATTGGCTTTCAGGATATAGCAAGTTGTTATTACA
AAAGGCACTTTTGATGAAATCTCTTAGTGGTAAGAGGCCTTGATTGGATG
ATATATTATTGTGAAACTCCACCTTGCTTGGAATCCCATTAAATAGTTGG
CTCCTATATTATCTTTGGGTGATATTTAGCCTCAGTGTCTGTATTAAATT
ATTAAGCTTTCTGAGGTAGTTTCGAACACAAGACCCAGAGGTCTGATAGT
ATGTTACATTACCAACTCTCCTAAAACCTCGAGTAAAACCTTAATGTGTT
GTGAGGAGGGTTTAATTGAATCATATATTATCCTGACTGGTAGAAACTAG
AAACCTCATATAATTTCAGATGTCTGGAAGATAATTTATCCAACTGGTGC
ATTAAATGAAACTGTATGTTTTTCTTCTTATGTTGTGGTGCTTATAGAGT
CTGGTTTGTGATGTTTTTCAAGTAGGATCTGAAAGAAGCTCTTGCCCATG
TAAGAATTTGCTCTAGATTGGAAGGGCTTTTACTGAAGAAAAAATCTCTT
GCTAGTGGAGACTCCCCTGAGGTTCACACTCAAAAGGTGCAGTATGCTTT
GTACTTGTCGATTTGCAATCTTGATTAGATTTACGTTAATCATATATTTA
GTTCTTATGTCAGACATACTTGTGTTGTGGATGCCTTTTTGCTGCACATT
CTTTCTGTGCCAGCCTATTTTTGATGCTTACAGTTGCATTTACCTAAAAA
ATGATAATTGATTATTGTTCATGTTGGATATATCCTTTTCTTTCAAGATG
TCCTAGTGAGGTTCGAGCTTTGCCGAGCTTATTCTGAGATATGCTATATC
ACGTGCTTAAATGTACATAGGTGTCTATTAATCGTCCACTGATTTAATTT
TAGACATTGTATTTGAATATTAGGGGAAGTTGGCAGGCACATCAAAGCCA
CCATTCCAAAAGTAGACTTATTACTGTATATCTATCCAAATAGGATAAAG
TTTCATTATTAAATGGTAAGATCATGCTGACTAAACGTAAATTTATTTTT
GCAACTTGTGCAGGTTGATAAGCTAAAACTTTTGTCCGAATCTCTTGCTA
GCTCCAAAACAAAGGCTGAGAAGCGCATCACAGAACAAAGGTACAAGACT
TGCCACTACCAGTTTTTCTGTTACTGTGTATGGGATGTTTATATTAATAT
TACATCGAGTAAAAGCTAAATTCAAAAGATTACTAGTAGCAACATATCCC
CACAGTTAATGTTGGTGTTTTCTATCTGGTGCTTTATGCTATTTCTTGGT
AGAATTAATCATGTATTACTTCACTTTTTCAAAAAAGATAGACTAGATGA
GGTGTGAAACCATAGGGGATGTGGATGTAACAAAAAAAATTGAGAAAGGA
TAGAAGGTTACATCTGGAATCGAAAAATTGTTTGGAAGGCTCTAATTACT
TTACCTCCCTTCCATCTTGTTTTTGGATTTGCTATTTTTGTAATTTAGAT
GGAGGTCATTTTGCCTCCTCCCACTGGCAGAAGGCAGGCTTCTTGACCCT
AGTTTGTCCTGTTCATCTTGTCTTGTTCTTCTGCTTATCTGAATTGATTT
TAGATGGATATTTCTCTTTAATTCAGGTATATGTTGTTTAGGTAATAAAA
CATACTCCCTCCGTCCCTCCCATTTCTTATCGAATGGGTTGGGCACGGAG
GTTAAGAAATATGTATAAATTAGTTGAAAAGAGGAAGAAAAGTGGGTAAA
GTGGTGGGACCCATTGATTTTTAATGTATAAAAAGAAGATAGTGGAGTAA
AAGTAGTGTGAAAAGGAAAGAAAAGTGGAGAAGTGGTGGGACCCATCGAC
TATTTTTGGTAAGTTTTGAAATGTAAAGAATTGGATGGGACACCCCAAAA
AGGAAAGTGTAAAGAAATGGGAGGGACGGAGGGAGTATATTTTTTAGCTT
TAAAATGAATTTTTGAACTAGCCAGTTAAATGCTGACATATTTTTGTTAT
CTTCTAGTTTTTAATTACTTATCTTTTGAGTTAACGTAAAACACAAGTAC
AGTTGCTTTCTTAGAATTTGTAGTTTACAATAGTAATGAGATAAAATTAT
AAAATATTTATGTTATTGTAAGTTTTTTGAAGTACCTAGTATCTCTTCCT
AAGGAATAAAAATAAAAATAATTATTTAGTCAATTTTTTTTTTATATACT
TGTACCATCTTCGACTAATACAGTGTGTTAATTTTAGTAAAAATTTAACT
GGAAGTCTAGCTGCTGCAAGTTCTTTGTTCATGTAAACTAGTATGTTTTG
TATACTAGGTTCACATTTTTCGACTAGTATGTTTTTGTATATTAGGAATA
AAAACGAATATAATAATTTAGTCGATTTTTTTTTTATATACTTGTACTAT
CTTTGACTAATATAGTGTGTTAATTTTAGTAACAATTTAAGTGGAAGTGT
AACCGCTGCAAGTTCTTTGTTCAAGTAAACTAGTATGTTCTTGTATATTA
GGTTTACATTTTTCGAGTGTGGGAACATATCAAAATATTTGTAGTGCAGT
TCTTTTTCTCTAATTTTTCGACTGTTTTTGAGGTTTTCTGTTTTAATAAT
AAAAAAACTAGCAGATATAGTAGATTTGGAGGAAGAAATGAGTGTATAAC
TGCAGAAATAAGAGAGATGAGGTGAGAAATGAACAAGAACATATAACTAA
CAGAGAAAACTAGGGTTTTAGGAAAAAAGCAGTCACAGAGAGAGAAGCAG
TTGGTGGAAATATATTCCATTTTCTGATATTTAAATTCCACATACTGAAA
TGTAAACATTCCAAGACTGTTTATAGTAGCCTGTAATGCAACTAACTAGT
AAAGGACATGTAAGTAACTAGTAAAGTACGCTTGTACCCTTTCTGATTAC
TATGTACTAGTACTACACAGCCTTTCTTCATAATATTACTGTACTATTAT
TCCATTCCTGACGTAAACCTATATAAACTACACAAACCTACATGTAAGAT
TATGTTGAGAATTATATGTTTTTTCTCAACTAAATTTATGTTAATTAAAA
ATTTGAAAACAGGATTCTCAAAGAGTTTGGTAGTTCTATAAGACCTAATG
GTTTTCCGGAAGTGTCCAATTATTAACTTTTGCATCTAGGTTTATCAATT
TTTATTGACATGATCACTAAGAAAACAATGTCTAACATCAACGCAATAAA
AATTGTGGAAAATGAACAACTTTAATTGGCTCTGTATCTCAACACTTTTT
TCATTTCTTCACTAAATAGTTTAAGCTAAATGTAGATGTCGCAACTGATG
TCCTTGCAATCTAGCATGTAAGTAGGAATTTTGTGAATTTCTGGACAAAT
CAGTCTCTGCATCTTGAACTCTAGGTTTTATCTACCAAAAGAATCACCGT
GTGGGATACCTGATACAAGCACTAGATGTGAATCTGTTGATTGAACTATT
GAAGCACCATCCCTACATCCATTATGACACATATTCATTATAGAAATGTT
TATATCCATTGTTTTGTATATTGTCAGAGTGCAGAAAGAAGAGGCGTTGA
AATTTCGCGTTATAAAAACAAGTGAAGTTGATGAAATAGAGAAGGTACGA
TGAATTATTACATAATATAACTGTATAACAACTCTGGCTTCTTTCAGCAT
TGCAAGAATTTTTTTATAATGTAATATTGCGCACCTCATAACTTATATTA
GAGCGCTTCAAAAAGTTTATATTGTTGTTGCATAGACAGCATGATTTATA
CGATCCTCCGCAAATATTAGCTATACTAGATATAACTTGGTAACATTTTC
ATAGTTTAGCCTTGTCGGTTTTTAAAGTTTTCTGTGGGAGTTGTCCTGTC
AAACAATAATAATTAAGAAGTAATAAATGGTTTTCTCTTTAGCCCCTAGA
AGTTTTCAAGAGACCGGTCTTCAGTGTGTATGTGTTCAAAAAAATCCCTA
GTTGCAGCATTTTGTTGTAATAATTCATATTATTACTTTTCCCAGTTTAT
GATTAGAAACATATGTATAAGAACAAAAGATTTGCTAATTATGCTTACAA
ATTGTTGTGGTGCATGTGCATCCAGTATTGACTGTATGTTGTTGTCTACT
ATGAAATAGGAATGTTGAAATGATAAATAAGAAGCATGTGGCTTTAGCTG
AGAAAGGCAGTGAAAACATTCATTTTAAGAGATTATGTTTTTCATTTCTT
TATATTTGACAATTATTGAATTGATTCTAATTATGAAATATAAACATTTA
AGTTTTAAAAAGTAAAATCTACATTTGACATTATGTAGGCTGGAGAATTA
ATCCTTGCCCTGTATCTTTGCTAAGTAGTACAGTAATGTGACTAAGAAAT
GTGCAATGAATTAAACAAGAATGGAAAGGAATTTATGATAGCATTCCATG
TTTACTAATGACGAAGACAGGGAACTACCTTTTGAGAAGTTAAAGTTCTA
TTGTGTTCAAATCTGGGTTCCTCTGGGGTTGGGCATACCATTTATATCTT
CTTTTTTTTGACAATGCAGGCCTATATGCCTTACAAATTAGTATCTGTTC
TAATAATTATCGGGGTGAGCCAGAGTCGAACCCGGGTGTCCCGGGACAAT
AGAGGATAAACCGACAACTGGGCTATCCAATTGTGCTCGCCATTTATATC
TTTTTAGTGTAATGAACCCTGGCCTTTTTAGAACCTATCCTCTTTAGATT
AATACGCAGTAATTCGTCTTTTAAATATATACAACCACTGTTTAGCCTAA
TATGTCTAATCAGGAAATGGCCTTATATATAGATCTTGGAGGCACAAATA
TTATCATAGAATTCACTAGGTAGTAATTGATGCTCAGTTGCTTTCTTCCA
CGACTCTGATTATCAGAGAATTCATTATTTAGTAATTGATGCTCAGTTAC
TTTCGTCGACGACTCCATTAAATGGATTTTGGTCTTTGCAAGGGGAACAA
AAATAATAGAATTGCTTGCAACACTCTCTTACACCCCTTGAGCATTTTAC
GTACTTCGATTGACAAGGAACACTGCACCCTTAATTTTTTTTAGATGTTT
AATTTGTTGCACAGAATTCAGATGTAGAACTACACACAATCATAAACATG
CAACCTTGGCTTTACGACACTTCAAAATTCACTGTAATCATGTCAAGGGC
CTATGAGATATTCATGCTATCTATTCGACAAATCATTTTAAAATTCTATC
TTGCTAGATTTTTTTTGAGCTTTGTTGAGATATGCTAGGATTTACATATG
TGATTTCCTTTCAGGAAATAACTGCTGAAGTTGCTGAACTAGAGAAGCAG
AGAGATGAACTAGAAGCTGCATTGAAGAAGGTTATCATTATTTCACATAT
CTCTCACATATAAAGTGATATACGATGATCTTGCAGTACAAAGCTGACCT
CTGGCAGTTGGACATTGACTCATCTATGCAAACTCTTTACTTCTCCTCTG
TTCCTTAATTACGTTAAAACCTTTATAAATAAATAATGGTAACCTCGTGA
TCTTTCTGCCTTTTTGACACTTGAAATGTGCATACCAAACCAGCATCTTC
TCTATAACTAAAACAAAATATGGCTCATCAGAACTTATGTGTCAGCCTCT
CATTAAATGGATGACATCATTATGCTTATGTGTCAATTCTTCATTAAATA
TCAATTTTTAAAATAATTTTTCTATATAATATCGTCATCCTCCACTAATT
CTATCTCATCTTCATAAATTATAGTATTAATTAAAATTAATATGCATCAC
TTGTATATTTTAATATCAGCTTTTTCTGAATTCAAATAGAATATAACAAT
AATATAACCGGGCATCTGCACGGGGACTAATCTAGTCCTCAATATATACA
ACTTGCAAGTAGGGGCTGGCGATGGTCAAATCTTCTTAGACCTTGCTCCA
GTTCCAAGTAGAGAGGCCGTTTTTTTTAATGGCATGCGTTGTTGTTGAGT
CGCTCGACTAGTCGAGCAGTCGGTATGAAGGGGTCGACTGGGCAGGTCGA
CTAGAAAAATGTAAGTATTTCGCCCGACTTATGATCGACTGGTCGACTGG
GTCGACTAGTCGGGTCGACTGGAAGACCCAGTCGATCGACTGGACTATAA
TTTCAAGAAAAACTTGTTTCTGCACTTTTCCACTTGTTGAACTTGGTTCT
GCAGTTTATGCTCTCCAGTTTATAGTTTTAATTACTGTCCAGTTATGGTT
TCTGGTGTTATGCACTCTTCTGCAGTGAGTTACACACTTACATTCTGCAC
TTAAAAGGGTTTAGAATTCTGCAGTTTTAAACTGCCCAGAATTCTGCAGT
TTTAAACTGCCAGTGCCCAGATTTCTGAAGCTTGAATTTAGAAGTTAGAA
CACACATATATAATTTTTTACACATATAAATATAAGCATATATAATATAT
AAATATATATTATTAATTTTATACCTTGTCGACTATTGTCGACTAGTCTC
GACTAGTCACGACTCGAATTGCTGCAGAGTCCGGACGACTCGACTCTACT
TACCGACGTAACAACCATGATGGCATGAAATACTCATGGAGTACATGTTA
AACTTGTCTGATGAACTTTTACATGACACTATCTTATGAATATGAATTTT
TATCTGTTTTACAAAGCTAAATAGGTGCTTCGTTTTTGTGATGAGACTAT
AATTACCTCATATATTGTAGTTCCAAATCAAAAAACTTTCCTTTAGAAGT
CAGTCATAGGCTTTATTCTAAACATTATTTCAACTTTTGGAATTTTATAG
GTCAACATCTCACTGGCAGCTGCTAATGCGCGGCTACACAATGCAAGGGA
AGAAAGGGACCAGTTTTATGAGGCTAATGATCAGATTGTTGCACACTTGA
AAACTAAGGTTTGTACTTTCAGATGTTAATGAATAAACACCTTTGCATAT
GCTTTCTTTGGCACATTTGATCTAGATCAAGAGCATCTTTTAAGATTTCG
TCTTTACTTATTATTTTACACCAGGAAGACGAGCTGTCAAGATCCGTGGG
ATCATGTGCAAAAGAAGCAGATGTTCTTAGTACTTGGATGAACTTCATGG
AAGATACTTGGGCTTTGCAGTCCTCGACTACAGAAACCAAGGAAAAGGAG
GTCAGGTATGTAACTGAATATATCTACTAATGTCAATATTCTTGTTCTAG
TGCATCATACAGTATGTATTCTGTAATTTGATCCCGTGTTCTACTAATTA
ATTATGCATTTTCAAGGGTTGAACTGGAGAGGCACGAAAATTATTTTGTA
AACTTGGTCATCCAACTACTTTCTACGTATAAGGTACTGTTTAGATCTCT
AAATTCTCAAACTTCCAAAAGGCATGATCAGTATAATCTGCAACCTCCCT
TCCCCTTTTCAGTTTCTTTTTTTTAATTATTATTTTATTATTATTTTTTA
AAACTTTTTTATGTCTCTACAGAATGGTTTGAAGCCTTCAATTGATCGTA
TTGAAAAGTTCGTTAAGAATTTGAAGAGTTTAAATGAAGGGTAAAGGTTT
TGTTACTTGTACTTTTTATGCTGAATTTTTATTGATTTATTTTGATAAAT
TTCTTGAACTTGTCCATGAGACAGGTCAAGAGAGCCATCCGCTGTTGATT
CCAAAGAAGTACACCCGAGGAAAAATCTTGAGGAGGAATATCTCGACTAT
GAAACTAAGGTCATTGCAAGATTCTATATATTTGAATGTTGATATTATTT
CTACTATTATGCCACTTAATGAATGGATTATGGAATTTTAATTTCTTAGC
TACCATATCATTATGACATTATCATAGGTATCATTTGCATCTTAATTTCA
AAGAACATAAGTCTGAGATGGATATATAGTTCATTAGCGTGCTCTATATT
TTGAGAAGAAACATGTACATAAAATTACATAACTTTTGCTTTGTGAATAC
CACTTTATGCATTGCATTGCATTTTTATTTTAGTTGAAGCTTTCAAGTAT
ATGTGTGTTGCACAAAATGCTATCAACTACATTCTTGTATTGGTTGTTGT
ACACACTGTTGCAAAAATATGTATATATATCTCTTAATCTGTTTACTGAA
TTATCTGAGCTGAATTGATTGTGCTCCTCAATGCACTCCCTTAATATACA
TATATTAAGTTTATGGAAATTATCCCAGTCTGTTGTATTTCACTCAGTTT
GCTATTGATGTACTTCTTGAATACAAGTTTGTGCGTTGCATTTGAAGCAC
ATTTACAACTATGCCAAAAACTCTCACTACAATCTGGTACTGGTGGCAGT
AGTTTGTACACTGTGTTGCAGAGTATGTTATACTCTATTAATATATTTAT
GTAATCTTTCGCCGAATAATTTATATTCCACAATGTGCTTACTTTTTCCT
ATATACCTTTATTAACTTTAGTAATATTACCTCCCATTCTCATGTTGTAT
TTCATTCTGGTTGCTGTGCCTATCATCTTATTAATAATCTATTAACTGGA
ACTTTATTGTGTTATATTAGTAACATGTATAAAGGAGCTAACTTTTTTCT
GACATCTTTACCCTATTGCAGATTATAACGACTTTTAGTGTAGTGGATAA
TATTAAAGAGCAGTTTTATTCTCAACTAGGAACACATTCCAGGTACTCTC
ATAAGATTCCATTGTGCTTATTTGTTGTATATGTGCAGTAATATTTTTTG
TTGTGTACATTCACTTATGCTAATGTTTATGCTCCAATCTGTTTAGCAAA
GAAGATACCATAATCAAAGAACTCCTTGATAATATAGAAAAATTAAGAGT
GGAATTTGAAGCAATAGAGAGACCGACTTTAGAGTTGGAAACACCAGAAG
AGGCAGAAAGTACCGTCAACGAAGCAGAAACTCTAGCCCACGAAAAAGAT
AATTTATCTGCTGAGAATCTGGAAGGGAATCATTCAACGACAATGGAGGC
TGCAAAGTCACCTAAAAGTAAGAAAAATGAACACTCAGACTCGCCTTCAA
CAAAGTCGGAGCAAGTTCTGGATGCAGAGGCGGAATTAGCCAAATTAGAG
TCCGAGTTTGGAAAAGATTACTCAGCAGACGAAGTCAATGACTGGGAACT
TGACGAGCTTGAAAGGGAACTGAGATCTGGTGATACGACAAGTAGCAAAT
AA
Sequence Length:
15402
Sequence Checksum:
3040dcc475e085cfbf32177367ee10e9
View location in JBrowse:
Cds:
>DCAR_019157cds ATGGCGTGGCTCCGATCGGCGATGAATAAGGCGGTGGAGGTAGGGAATAA GAGCAATCTCACCCGCGCCATGAAGAATTACACCGATTCCGTTGTTCACC AAGCCGGTCAAGCCGTTGCTGAGGGCGCTAAGCTTTTGCAAGATCGTATC GGAGCCAAGAGTTTTAAAAGTTTTAAGCAGACGGTTAAAAGATTAGAAGA AGCTTCTGTATCTTTTAGGGGCCAAGAAAGGACCCTGCTGATAAAAAAAT GGTTGATAGCTCTCAAAGAAACTGAGGAATATAAAGAAAGGAGTCTCGAA CAGCATCAACCTTCTGATGAAGTGAAGGAAAATCAGAAAAAACCGTCTAT AGTTTTATATTTTGACTATGACATGGGTGGTGAGCCACTGAATTTTCGTG ATGTTTTTCTCTATAGTCAAGCTTTGGAGGGAATCACAATATCAATGATT CTTGAACCACCAAATGAGGAAGAAGTTCCTCTACTCCTACTGCTCTTTGG GTTCTGTCTTACTGGTGGGAAAGAATTTCATCATGCAATAGTGAGCAGTA TTCAGGACCTGTCAAATGCCTTTTCTAGCTACAAAGATGAAGTGCTGGTC AAGCGGGAGGAACTTCTTCAGTTTGCACAAAGTGCTATATCAGGATTAAA AATGAATGCCGATATTGGAAGGTTAAAGCCGATCCTATATTTTAGATTCT CTATTCCTCCTAGGATAGATGCTGAAGCTTCTTTACTTAAGAAAAAGCTT GATCAAATAGTAGCAAGATCAGAGGCTAAAGGTGAAAGCCATGAAACAGC CTCTAAAGAAACAACTGTTTCTACAATAGAGGATCTGAAAGAAGCTCTTG CCCATGTAAGAATTTGCTCTAGATTGGAAGGGCTTTTACTGAAGAAAAAA TCTCTTGCTAGTGGAGACTCCCCTGAGGTTCACACTCAAAAGGTTGATAA GCTAAAACTTTTGTCCGAATCTCTTGCTAGCTCCAAAACAAAGGCTGAGA AGCGCATCACAGAACAAAGAGTGCAGAAAGAAGAGGCGTTGAAATTTCGC GTTATAAAAACAAGTGAAGTTGATGAAATAGAGAAGGAAATAACTGCTGA AGTTGCTGAACTAGAGAAGCAGAGAGATGAACTAGAAGCTGCATTGAAGA AGGTCAACATCTCACTGGCAGCTGCTAATGCGCGGCTACACAATGCAAGG GAAGAAAGGGACCAGTTTTATGAGGCTAATGATCAGATTGTTGCACACTT GAAAACTAAGGAAGACGAGCTGTCAAGATCCGTGGGATCATGTGCAAAAG AAGCAGATGTTCTTAGTACTTGGATGAACTTCATGGAAGATACTTGGGCT TTGCAGTCCTCGACTACAGAAACCAAGGAAAAGGAGGTCAGGGTTGAACT GGAGAGGCACGAAAATTATTTTGTAAACTTGGTCATCCAACTACTTTCTA CGTATAAGAATGGTTTGAAGCCTTCAATTGATCGTATTGAAAAGTTCGTT AAGAATTTGAAGAGTTTAAATGAAGGGTCAAGAGAGCCATCCGCTGTTGA TTCCAAAGAAGTACACCCGAGGAAAAATCTTGAGGAGGAATATCTCGACT ATGAAACTAAGATTATAACGACTTTTAGTGTAGTGGATAATATTAAAGAG CAGTTTTATTCTCAACTAGGAACACATTCCAGCAAAGAAGATACCATAAT CAAAGAACTCCTTGATAATATAGAAAAATTAAGAGTGGAATTTGAAGCAA TAGAGAGACCGACTTTAGAGTTGGAAACACCAGAAGAGGCAGAAAGTACC GTCAACGAAGCAGAAACTCTAGCCCACGAAAAAGATAATTTATCTGCTGA GAATCTGGAAGGGAATCATTCAACGACAATGGAGGCTGCAAAGTCACCTA AAAGTAAGAAAAATGAACACTCAGACTCGCCTTCAACAAAGTCGGAGCAA GTTCTGGATGCAGAGGCGGAATTAGCCAAATTAGAGTCCGAGTTTGGAAA AGATTACTCAGCAGACGAAGTCAATGACTGGGAACTTGACGAGCTTGAAA GGGAACTGAGATCTGGTGATACGACAAGTAGCAAATAA
Pep:
>DCAR_019157pep MAWLRSAMNKAVEVGNKSNLTRAMKNYTDSVVHQAGQAVAEGAKLLQDRI GAKSFKSFKQTVKRLEEASVSFRGQERTLLIKKWLIALKETEEYKERSLE QHQPSDEVKENQKKPSIVLYFDYDMGGEPLNFRDVFLYSQALEGITISMI LEPPNEEEVPLLLLLFGFCLTGGKEFHHAIVSSIQDLSNAFSSYKDEVLV KREELLQFAQSAISGLKMNADIGRLKPILYFRFSIPPRIDAEASLLKKKL DQIVARSEAKGESHETASKETTVSTIEDLKEALAHVRICSRLEGLLLKKK SLASGDSPEVHTQKVDKLKLLSESLASSKTKAEKRITEQRVQKEEALKFR VIKTSEVDEIEKEITAEVAELEKQRDELEAALKKVNISLAAANARLHNAR EERDQFYEANDQIVAHLKTKEDELSRSVGSCAKEADVLSTWMNFMEDTWA LQSSTTETKEKEVRVELERHENYFVNLVIQLLSTYKNGLKPSIDRIEKFV KNLKSLNEGSREPSAVDSKEVHPRKNLEEEYLDYETKIITTFSVVDNIKE QFYSQLGTHSSKEDTIIKELLDNIEKLRVEFEAIERPTLELETPEEAEST VNEAETLAHEKDNLSAENLEGNHSTTMEAAKSPKSKKNEHSDSPSTKSEQ VLDAEAELAKLESEFGKDYSADEVNDWELDELERELRSGDTTSSK*