Resource Type:
Gene
Organism:
Name:
DCAR_019216
Identifier:
DCAR_019216.gene
Locus Tag:
DCAR_019216
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_019216, is a part of gene, DCAR_019216. |
| The genetic_marker, MK005485 K2929, is located in gene, DCAR_019216. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_019216 | DCAR_019216.mRNA | mRNA | DCARv2_Chr5:37150690..37165418 |
Sequence:
ATGGAGATTGATGAGAGCTCTACAGCTCCGAGAGACCGCAGAATCGACGC
TCTAGGCGACCTACGCGTTCTGCCTGATGAAACCTTGTGCTCAATTCTGC
TACTGCTCTCTCCTCGCGATGTCGCACGCTTGTCCTGCGTTAGCAGGTTT
TGTCTCTCATTACACGCATCCATATGTTTTCATATTCAACTGTTGCATCA
TCATGACTTCAATTGAGTGTCGATATATATGTTAAGATTTAGCAGGTTTC
ACTATTAATTGTGTATATGTATGTTTCGGTATTATCGGTGTTGAGTAAGA
AGTATAGAATTCGAAAGTAGAAATAGGGATTCGGATTGAAGTTAACCTAG
GTCACTTGCGTAGATAAACTTAAGAGTTACTTTATGGATAAACTAAAGGA
TAAATTAGATGTTCTCATGTCTTGAATATTTTGATTGTGAGGTTTCTGGT
ATGTTAAATTCGGAGAAACGGTTATCGTTCCTCACATCATTGATATTATT
GTCCAATTGATTGATCAGTAGTTCGTGATCCATGAAAAAGGAAGGTTCGG
GATAAATGTGGGCAAGTTGGAGATGTTTTTCATGATCGAAACACGAAAAT
GAGTTTCTTGGCTTAAAAGAGCTAATGCAAAGTAACTCTGTGTTTCTGTA
CAAAGTGGTTATTCACCTCTAGAATAGTAAGATCAATAAACTACCAAGGG
GGAGGGAAGGAAAATTTATGGGTGATCTAGGCTGAAGACCAATTAACTTT
TTTTTAAGATTGCTTCCCTTGGACTTATTACTTGTTAGCAAAAGCATTAT
ATTATAACTCAAGTTTATGCATGACTCTATACCATGTAGACACGTGTTCA
CCTAGAAGATACTTAATCAAATAATCTAAACTCATATTAAACTCTCAGTC
TTTGCATTTATTTGGAAATGTAAATAACACAAACTGGACTTCAGAAATTA
TACTCAAAAGGTACACCATGTATTTTCGTGGGATATTTGCTCGCCAAAGA
AGATCGAGGCGATATGATCAAGATTATCAATCTTGCTGCATGGTATATAA
TGAGCCATTGACAAGCTCTACCACAGATTGTAATAATGGTCCTACGTGTC
TTTGGCAATATTAACACGAAGACCATGCCAAAGTCTTCCCAAATATCATA
ACATAGAGAACTCGAAAAAGAAGTGTATAAACCCAATTGTTTTGCTTTCT
GCCCCATGGTCCTCTGGCAAGTACGACACTATGTGATTATACGAGCAAGA
TACCTCTTCAAATTAGGCCAAAATAACCTATCCGTAACAATAGCAATGGC
CTTATTTTGTCCAAGTGATCAGTAACAGTAACTCTTTCATGGTATTCCTC
TTGGCCTCATTAAGCTTTTTCAAAATATCAAAATAAAATTGTGCATTTTG
TCATATATTAGGAAAAGAAATACAGCGGCGGTGCAAGGTCTGGGGCTAAA
AATAATATAGAGTTTATAGTGTATTCATCTTTTTGATACTTTTACTCCTA
GTGGGGGATAAAAACTAATTGTGGTAGACACTCATGTGTAATTATTTTGA
ATAATAAGTACATATGTGTAATGTTTTTTAAATTTGTAATTGATATTAAG
AATAATTGTTGTGAAGAGCTTTATAATCGTTCAATATATATTTTGTATAA
AGTAGTTGGTAATATACTAAATATGATAAGTATCTATATAGATGATTGAT
CACACATACATCGTTCGATATTAATTATTATTTGAACTATACAACTTTTA
CACTTTGTACTTAAACTATCAATCGTGCACTCTAAGTTCATTGCACTCTA
TGTACCTAAAGTATGCAAAAACAAAAATTTGCTCACTATCATTATTTTTG
TACCATAGTTATGTACTTTTTGTACCTGGACTATCTGAAATTGAGCAAAT
TGTGTACTTGAAGTTTGCGAAATGATCGTGTAATTTTTTTTTGTTTAGTT
ATTTTATATTTGGCTGTATATGTATTAAATAGAATATGAAAAATTAAGTA
TTTAAGAACAATATAAAGCACGGAAAAATTACATAATTTTTTAACTTATA
ATGTAAGGCCCCTAGATGTATTATTTTGATGTTTTAACTTTTTTTAAAAA
CAATTATGTACATACACTATCCATGAAAATTGTTAGTATCCTAGGAAACC
TCAATAAAGAATCTTTAAAAATTTATTAAATTAAAATAAATAAAGAACGA
GCGTGATGGGATAACCCACTTATCCTCTTTCATCCTTTCGTCCCAACTTT
ATGGTTCGATTCTCACTCACCCTGAAATTTACAAGAACATATAAAGAATT
TGTAAGCTTATAAACTTGCCTATTCAAAATATATAAAATTAATAAAGAAC
AAATATAATGTTTGGCTTTTGATTTTTTTAATCTAAATTCACACATAATA
TGAAATTGTTTTATGAATAATAAATTAAAGTTTTGTTTGGAATATAATTT
TGTACAGGCATATAAAGTTTTTGTACCTAAAGTGCACAATTGAAGTCCGG
GTAAGCAAATTAATAATATATATAAAGGCCGGTACAGAAAGTAAACAATT
AATAGTTCAAGAATGCGAATTGCAGAAAGTGCATAGTTTACATACACGAA
ATGCACTCAAATATAACTATAATTTTTATTTCATGTTTTCGGCAATAAAC
TTTAGACCGTAAATTATAAACCGTAAATTATAAATTTTCGGCTATTGCCC
CCATCTTGTGATGTATAATAGCTGATCAGTGGCCTTCCCATTATTTTGAC
ATAATTCAAATAAACATAATAATCACATACACCTTTGGCACCATAAATAA
TCTTCAAAAGAAACCTGAAGACCGTAATCGTTCATTTAGGCAAAAAATGT
CTTGCTAAATCTCTTAGAGCCATAGAGTAATATTTTTTCACAAAAGGATT
TTTGTCAATAAGTCCTTTCCTCTCTAATATCAAATATTAAACCCCTAAAC
ACTGCCCAAAATTGCATAACTACTTATTCATGTAACCATACAGGATTCAG
TATTAGGTTATAGAAGTTACAAGTCAAATAGTTATATGGCCTGTTTAATA
GTAACGTTCGTTTTTAGCGTTCAAATGTTTAAGCATGGTATTTAATAATT
TATAACCAAGGTTTAACACTTGTATATGCCGAGCTTTGTACTCAGGTTTG
CGAAGGTTGCATTCGTTTACCAAAAAGCAGTGTTATATTCATTAGCAGAA
AATTAATAGCTTTTTAGTTATTTAATATAATGGCCACAAAAAATTTCCAA
CTCTCTATTTGTACCAACCGCAAATTTTTTATATCATATACGATTTTCTT
GTCTTTGTACAACTGTCCTAGAAATTGGCAGTGTTTCTTTAGAGCCACAA
AGTGTATGCACATAGGATGGGTAGTTTCATGCATTACATGTGGATATGAG
TGTTGTAAATATTATCAAGTTAGGCACCCGAACGAACATTGAAACAAATG
AGATTATTATTAGGATAGTAATAGTAATTCGTAAGGGTAAATATTTAGCA
ACTGAGGGCTTGATCCTTTCTCAAGTTGTTTTTGATACTATGTTTAAGGT
GTATATGGTGAAAACTTTCACAGTTCGCCCATGATAGGGTATTCTAATAA
TGAATATCAACTATGTCGCGAATAGAAAATGACGTATAACTTTAAATACA
GATGTAATTTGTGAGTTATTTCTTTCCAGCTTAATTGAAATGTGTGTATA
TAATGTAACATATGTGATGAATCACTAACTCCTTATTATTTATGAAATAT
GCAGTGTAATGTATATACTGTGCAATGAAGAACCACTATGGATGGCTCTT
TGTTTGAACAACTTAAACCTTCAGCTTCAGTATAAAGGCTCCTGGAAGAA
AACAACACTACATCAGTATGTTTTGAGCTCTTCTTATCTATATATGAGTT
ATTTTCTTCTAATTCATGGTTAAAATCTTATTGCTCTATTTTATAATATC
AAGTATAACTGCATGAGTTTGATAAGACTGGTATTCCCCCTCTGTTTTTT
TTTGCTTGGACTGCAGACTGCAATTGCTAAATGAGTACAAACCATGCAAA
AAGGCCCTGCAGTTTGACGGTAACCGATCTTCTGCACGATCTCTCTATTA
ATTATATCATCAACCAAACAGTCCTAAAGTAAATTTTATATCAGGATTCA
ACTCTCTATACCTGTATAGAAGATTATACCGTTGCTATACCACATTGAAT
GGATTCTCTTTTGACAACGGAAATGTGGAAAGAAAGAGAGACCTCTCTCT
AGAAGAGTTTCATCATGAGTATGACGCTAAGAAACCAGTATGTTGTTGAA
TTCAAGGGTTATCCATATTAACTGGAAGCAAGTACTTATAGAACAATAGT
TTTCTTATTTGTAAATACACACACACACACACACACAAGTGTACAAATAC
AAACTAAAAATAAACTAAAAACTACAAACTAATCTCATTCTTTAGATCAA
TCTAATCTAATGGCTCCCATGGAATTCACCACACGGTTTTTCTAATGTGT
GCCCATGGGCACACAATAAGCACAAAATGTGATAGTTTTTCTATGTTTTG
ATTGGCTTACACTCTTTTAATAATGATGGCCCCCCTGCATTCACACCAAC
CACACCAATGAAAACACACCAAATTTATGAGTTTCCGTGCTTAGCATGTG
CCCATGGGCACACACTAGACAAACCCATATATATATATGTGTGTGTGTGT
GTGTGTGTGTGTATGTATGTATTGGTAACATTGCAATAATTATTCTCATG
TTTGCATATGTAAATTGTTCGTTAGTATACAATTCAATTTCGCTAAGTAA
AAAGTCAAAAGCCCTTTTTAAGATAAAAGTAAAAAAGTTTCAGGTTTCTT
GCTAGCATGACTAACGACAATGCTGTACTCATGTATCTAATACTAAGCTT
TACACAAGGTTTTGATATCTGGACTGGCCAATACTTGGTCAGCAACACAT
GCATGGACACCGGATCGGCTTATGGTTGATTACGGGGACAAAGTGTTTAG
AATTTCTCAGAGAAGTTCAAAGAAAGCAAGTATAAAATTTAGAGATTATA
TCTCCTACTCGCAGATCCAGCATGATGAGGATCCCCTCTATATATTTGAT
GACAAGGTGCTTGCCATTGTACTTTAGTGTATTTAGTGTAGTTTCTATGT
GATGTATGCACATTCTAATTCTTCTTAGAACTCCAACTTACTGATTGCAG
TTTGGGGAAGTTGCACCAGGTCTGCTGAAGGATTACAGCGTGCCTCATTT
ATTCCAGGAAGATTGGTTTGATGTATTAGAAAGAGACAAAAGGCCCCCTT
TTCGATGGCTCATTATTGGGCCTGAGAGATCTGGTGCCTCTTGGCATGTT
GATCCTGCTCTAACCAGTGCTTGGAATACTCTACTTTATGGTCGTAAAAG
GTAACTTGGATTTGGATTTGAGAAATGATATACAGTGCACCTCAGCCCAA
TTACCTTTTAATGACCTTTTCCAATTTAATTTGATGCTTGTGAAACTGAT
AAATCGTCATCCTCGGATATTGTATTAAACAATGACTTCCAAGTGGTAGA
TTAAGTTTCAGATTTGGACTGGGGACTACAAGTATAACCGCCTATAATAG
CTGGTCTCAGAATGAAATTAGGTTTAGGTATAGACATTTAGAAACAAAAA
CACATACAGTGACAGGTGGAAGTCCCCTCTCCCCCTATATAATAATCAAG
GTTTAAATTGGTAATATGAAATGATTATTAGCAAGTATATATAGGACTCT
TCGGAAGTGTCCAGCATTAGCATTGATATTCCAGAACCAGGGACTATAAA
TTAGACTTATAATAGTCTTTTAGTCAATAAATTTTACTCTTGATTCACAT
ACATTGAACTTGAACATAATGTGCAATTTTCTAAAAAATAAAATCAGGCA
ACCCTCTAAAATTCAGAGTCATCTAAGCAAAATTTTGCAACTCTAATAAT
CTTGTAACGGCTACTCTATTTTGGAATCTAGGAACAGAAGTTGTGATTTT
TTATATTTCATGATGATAGTTGGTGCACATTTATGCCTTGGTATCTAGGA
ATAGAAGTTGTGATTTTTTATATTTCATGATGATAGTTGGTGCACATTTA
TGCCACATGAACCTTAGCAAATAACAATCCAGTGACTTGACAACTTAACT
AGAAACTAAAAAGAGAACGAAGGAGAATGACAGCAACCTAAACAAATAGA
CTGAGATAACTTACTTAATATACGGATATACATAACTTTCATTATGTGGG
AATACAGCCTTTAACTTTAACATTTAATCTTTTCTGTAGCAGTTCAAACT
ATTTCAGAACAAAATCAGGTTTCACATTTTAATTTTGACTCAATAGGTGG
GCACTCTATCCACCAGGAAGAGTACCATTAGGTGTCACAGTTCATGTAAA
TGAAGATGATGGTGATGTTAGTATTGATACTCCAACATCCTTGCAGGTAT
TTGACTAGCGAAGAAAGTTTGTCCAATTATTGTTGTTCTGGAGTTTATTT
ATTCCTTTTGGGGCGTTATTTGATATTATTTGTGTGTTTACAGTGGTGGC
TCGATTTTTACCCACTTCTTGCCGATGAAGAAAAGCCGATAGAGTGTACT
CAGTTACCTGGAGAAACCATATATGTTCCAAGTGGATGGTGGCACTGCGT
GCTAAATTTGGAGACCACCGTTGCTGTTACTCAGAACTTTGTGAATTCTA
AGAACTTTGAATTTGTTTGTCTGGACATGGCTCCTGGTTATCGACATAAA
GGACTCTGTCGTGCAGGATTGCTTGCTCTTGAAGAAAACGCCTTGGAGGT
TGTAAAAGAGAATGCTTTGCATGTTGAAGAAAGTATACTGCGTGATGTGA
GACAAACAAGTAATGGGAAGAGAGCCAAAGTGTCGGAGTCTGGGAAGGAA
CCAAATAGTGAAATTGCTAGGCGTGGTGCCATCAATGTTCATGATGTGTG
TAATTTAGAGTTTTCTTACGATATCAATTTCTTGGCTATGTTTTTAGACA
AAGAGAGAGACCACTACAATGCTTTATGGAGCTCAGGTAACTCTATAGGA
CAACGAGAACTAAGAGAGTGGTTATGGACGCTTTGGGTTGGAAAACCAGG
ACATAGAGATTTGATTTGGAAGGTACAATTGCTCTTTCTTCATCAGTCTT
CTTTTTATTATAATGATTAGTTAGTATCATGATGCTCCATGAAAGGAGCA
AAGACTGCTACAGTAATTATTTTGAGATAGCTAAGATTAAACAGAAGAAT
GTAAATAAAGATTTATTAGAATGGCTCAGTATATAGAAAACATAGGTATT
TAGTAATAATATCTTTTGATTATTGCTTTTGACAGAAAAATTTGTAGTTT
ACTAATCATCCTTTATATATCATTTTAACTAGATAATGCATTTTTAATCC
CGGAACCAATATAAGTCAAATATAACTTTGTGTTATTTGTTTGATTTTGT
CCAATAACGATAGGACAGATGTTGTAGTATGCATATAAAGTATTCTTACG
TGCAATGTTTACAGTTAGCTTAGAACAGAAAACAACTTCAATTTCTAAAC
GAGTATTAAGTTTTAATGGCCAAGATATGTGGCACCTTTTCTGTGAAGAC
TTGCTCAATATAGGTTCAGCGGTTACAAAATCATCTAAATAATATCAAAT
CCAATCTTCTTGGCCTGCACCACCTACATCTGGAAATAGACACATTGTTA
TCTTGCGGGTGCAGTTGAAAATTAGTATCAGAAGTCTATAGCAGTTGAAA
GCTAATGATTTGTTTGATTTCATATCCTGATGGACAGGGAGCCTGTCTTG
CGTTGAATGCTGGTAAATGGTCTGCTTGCATGGGAGCAATTTGTTCCTTC
CATGAATTGCAGTTTCCCTCAGATGATGAGAAACTTCCTGTTGGCACAGG
CAGCAATCCCGTAAGTGAATTTAAGTTATGGTATTGGTTTTTGAATGTCA
TCTTTGCTTGTGTTCTGTACATATATTGAACATAATGATTCGTCCCTTCT
AATCAACCTGCTATATTTTCATGTTCTATGCATAATCAGTTCTTCATTAT
TATTTTTTGCAAACGTGAAGGGATTCTAGACATTAAGTTTTCTTGCAAGT
AAATCCATGTGCTGAAATGTAATGTGTAATTGCGTATGGGACTAGGCTAA
CCTCCTGGATCCAGTTCAATGGTCTTAGGGAACTACAAAACGCAACAATA
TAACGTTGAAGTCGTTAAAGGATAACTTTTTTTTTTTTTTTTGTAATGAC
GTAGGGTTTCTGCCACTTTTAATTAAGTAGTGACTAGCTGAGCAATTAAG
CGAGAAGTGAAGTGAGGAGAAGGAGATGCGTTGTGGACTTAATTAGGCCA
GGTGTCCTATATTTCCGAAGCAATCATTCCTGCCATATTGGCCAAGCGAG
AGTCCAATACTCTGAGGTGATCAGTTACTCGTGACTATCGGAACAAGTGT
CTTTTTGGTCCCATACTTATCAATTTGAAAAACAAACAATGAAGGACGCG
CAAATATAAATTAGGTGACCTCAAGGTGTTAGGTTATGGGCTTACCAGAA
TCATATTATATTTTTTTTAACATCCCTCCTCACTTGAAGGATCACTAGGT
GTTTCGTCCCTTTTTGGGCCTAGTGCCCGGTCAATTTTCAATTATTATGT
GGGAATCTCGTCCCATTCTGGGCCCACCAACCATAGAGACTCGTCGAGTC
CCTCCAAAACCATTGCTCTGATACCATGTTCTCTTAAAACCTGAAGCTGT
TATGTTATGGGCTTACCAAGATCATATCATATGTTGCAATCACTCTCAAT
TCTGAACTCACATTTTCGTTAGTATAAAATAACGACCGAACCCCCTAGTT
GCCCCTCTCTAGTTATATGATTGCTAAAATTCTGCTGCTATATACTGTTA
TTATTGCTATAGTTCATAATGTGTAATCTGTATCCCTAGGTTCAGTACAC
CCCCTTGACAACCAATGCTAACATTCTCAATAATCCTCTACAGCATTTAA
TTTGGTGACTTATCCGAGGCTTTAGATGTATTCTTGCCCTGTTTGTTCAT
TATGAGTTGTTACAGTAACGCCCTTATTATAAACTGGGGTCTCTGCCACT
AGAAAGTCAACTGTCAGTCTTAGATCAGTGAGCTCAACTGGATAGATTGA
GAAAATAAGCTTTTTTTAAGTTGTAGTTGGCTGTGATCACTATTACCCCC
TTTTTACTGGATTAAATAGTGCTGCAGTCTCATCACTAATTTAATTTTTT
TTGACAAAATCAATAAACGAAACTTAAAACCATTCTATTCTGCTGATCTA
GTATGGTAAGATGATGTAAACATATATCAGTGGTGGTTTTATTTGGATGA
TTAAAAACGGATGGGCAACCCCACTCTATCGTGTGTTTTATCAACTAGTT
CAATTTACCATGTTGCTTGTTACACCATTTCATCATGCCAAGGAGGAAGT
TGTTTTATAACCGTGATGTGAACCAAATAAAGTTGGGGTGCCCCGAATGG
CACAGAGAAGAGGATATAATGAGGGGTAATGAGGTATACGGAGAGTTTTT
GGCTGACAAAAGTTTTTTTTTTTTTTTTTTGATAATTTGACAAAATGACT
CTTTTTTAGTATAAGTATGGACACCGTTCAGTATTTCATACTAGATATCT
ATATTGTTTATTATGAGAGGACACCTAACTTTCTTGTTACCTTCTTACCT
GACACTGTTTGTTAATAGGTCTACCTTGTGGCTGATAATGTAATTAAGAT
ATATGTGGAAGATGGCTTAGAAGCTTCTCTTCATTCGATTGGCACTGAGG
TATATAGTATAATTGATTATATGATTTTGATTTGTCCACTAGATTATTAA
TACTTTTCTAGAACCTCTAATGACTTTTACTTGTGTTGCAGCTCGAATTT
TACAGTTTATTGTGCGAGTATGGATCCTCTTTGAAAAATCATATTCCTGA
TGTTCTGGCTAGCGGAATTGTCATCTTCGAAAGGGGATCTTATAAGGTTA
AGCCGTGGAATGGTAAAGGCCTTCCAGATATAATGGATGAATGCGATTTG
AATCTTGATAATATATCTAGAGATGTTGATTTTCCGTTTGGCATATGGAG
CAAAAAACAATTTGAATATAGAAACGCCGGAACAAGCGAGCCGAGTCATT
TTCGTGGACACCCAAGTGTATGGCCGTATATTGTCACAAAAAGATGTAAA
GGGAAGCTATTGTCTGAGCTGTAAGTTTCAATATTTTTATTATTATTTTT
TTTTTTTGAATATAGTAAGTTTCAATATTTATAACTGCAATGCTTAAAGT
ATTTTGACATAGAATCTAAAGTATTTGTGTACTATTTCTACTAAATATTT
TCAGAGCGGATCGAATCTTATGGGAAGACACCGTAAATCTGGCATCATTT
TTGGGAGAACAGCTGCGTAACCTTCATCTTATGCCCTTTCCACCTCTATG
TGATTTGTTCATCAGGGAAAATAATGAATATAAAAAAGATGCCCATTATA
ATAGTATTTTCAAGAGTGAGACTGACGGAGGTAGCATACCAGCAGAATGG
AAAGTTTTTCTTGGAACCCTCAACAAAAAGAGAAAGGATGTTGTTAGCCG
CTTGTTTAATTGGTATATACTAACAAAAATTCCACGTGTCTATAATTATT
GCTATTGATTTTTTTACTGGAGAGTTCAGAACTTATAGATATTCTCGGGT
GATAACTGATGAATGAAGAGAAGTAAACTAATCTTTGAAAGCACATATAC
ATGTCACACAACCTTCATATACTTTTATAGCTGCCGATTTCTTATACTCA
CGTCAAATAGATTTCAAGCAGCTTAATTTTGTTAGTTTAGCTTCTTTCAG
TTATTTTGTGTTCCTAATGGGAGCTGATGACATTGTTCTAGAGTGAGTTG
GTGAATTTCCGTTTGTAGTTCAATTGAAAGATTCATATATCAGCTTAATG
ATTTTTGGTTCTATCCTTGTTCTACGTTGAAAGCAGGAACTTAATAAACC
TTTTGTGCACTTTCTTTGTCAGATATCTTATATGTTTCGATGTTTGTGAA
TGTCTGCAAGGAATGTGGAGAAATGCTTTTGAGCATCAATCTCTATTGCA
TTTGACAAAAGAAGCATTGTATGTTTACTAACATCTTAAAATGTGAGATT
CTGTAGGGGTGATCCTATTCCCAAGCTTTTGATAGAACGAGTCCAAGAAT
ACATTCCTGAAGATTTTGAGAACATCCTCAATATCTTTCAGGTAAAGTCC
TGTTTATTTCTTTGTTCAATCTTGTTTCTTTTGCACTGATAATGATAAGA
TTAGCACAGTTTGTTTATTCTTCTCTGTTTCTAATGACGAGCTTTTGAAC
TGTTAATGATAAGATAAGCACTTTCACGTGCCAAGACATATTCAAGTTTC
ATAGAATCTGATCTGTTATGCTATAGTGTGGCAAAGGAGTGCCAGAAGTG
TGCAGAACTTGTACCTGGATACATGCAGATATAATGGATGACAATATCAT
CATGGAACCATCTTCTGTTGGTTCTGGCTCAGGTGACACAACTTCTGGTG
GTTTGGGTACGACTTATAGTAAAGGAGAACTGAACTTGTGGCGTCCTAGC
CATATTCTTGATTTTGGTAATATGTCAGTAGGTGGGTACTGCTAGCTTAT
TCCTTGTGTTTTAGTATTTTCATATTCTCTGTTCACTATCAAGTTATATG
TCAAACTTTACTATTTTAGCAAATCTAGTACAATCAACTGTCAAATGGCT
AATTATCTCACTTCTTTTAATTAGAAAATACACGTGTGAAGGTACAGGGT
CTGGTATTATTTCTTTTTAACACATATAATATTGTTAGGAATGGGGTAGT
AGAATCTGTCCTAGTAGTGTTCTTAGTAGAGTGGGTAATGTAATCTCTTG
GGAGTTAGTTAAATAATTGGCTACTATAAGTAGTCTTGTAATGCTCTACT
TTTTAGTATGTTGAATTTGAATGTCAGAAGATGGAATTTCTTTCCAGCAC
TTTTTCTTTCTCTAGCCCAAACTGAATTCTTTCTCTAAAATATATCTTTC
TATGCAGTTTATGCGCTCTTCTACATTTCTTGTCTAATCTTCTCTATTTC
TGCATCTGAGTACTTAAATCTATTGTAAATCTCCTGTATTATATATATAA
AAAATATTGTCGAAATGAAATGCTTATTACATATTTGAGATGTTTTTAAG
ATACTATTGGCAACAAAGTCCAATATCATAGATAATGCCTTTAATTATTT
TATTATTGCACTTTTTCGTAAAAATTGCAGATCCACTTTGATAATTAGTG
ACAACCTTGTGGAGATATAGGACCTCTGTTTAGTCCCTTTTGAATGGTTT
CTTCCATTATATATTAAGATTAAATGGGAGGATATACACTCATGTTATGT
ATAACGTTTAGAACAATGCTAGGACCAAGTGGTTAAATGTGAGGAATTTT
GACTATGCTTTTAGCAATGTCTATACTGCTTATTAATTTTTACTGTTGAA
TTCTAAATGTTCTTCTTGCCAGGAATTGTTGTAAATCAGTGATTACCCGT
TTCTATGTAGCATTATAGTAAACATGGTGCATGTCAATGAACTGATTTGG
AGTGAACACTATAAATTTCAGAGTTACTTAAGTATCATATAGCTTCCACA
TAAAATAGAATGAAAACATGATACTCTTATTATAAGAAGTTATCTGGTTT
TTTGTTCTCTGTACCTGTTACTGAAGAAATGTTTATATTTTGCTTTTGCA
GGCGACCCAATATGCGATCTGATTCCCTTATACCTTGATGTTTTTAAAGG
AGATTCACGTCTTTTAAAGAAATTTCTGGAAAGCTACCAGCTTCCCTTAA
TGAGTGATGCAGGACAAAAGGAATTATTGAATCAAGACAGCAAGTTTTAC
AGGACCTCATACCTAGCCATGTGAGTTTGAATCTGATTATGTTTTATTCT
TGAATTCTTTTGTGTTGGGTAGTGATCTGGAATGTTTTTAAATGAAGTTA
AAGTTAGCCCAGTTAAAATTAAAGTATCTCTAGCTCTTGTTATTAAGTTG
TTTACTAGTTGTGAGTGGCTAGCCACTGAAGACTTTGCTGCCCGGTGAAA
GACAAGCCGATCAACTAAAGTTTTCGGTCATCGATTGATGCGAGAAAGCT
AAAGGCAGGAAAGAATCCAAATTTACGTTTTTGAGAGGCCACTATTATTT
TTTTTTTATCTTTTCATCTCCTTCTTCCCTTATTGTTGACTAAAATTAAA
AAATATGAACATGATTTTGTATATTCAACAACATAAAGATGATTTCTTAC
CAAAAATCAAACGTAAAACTCACCTCTAAAGTTGTTACCATGACTCGTTC
ATTTGCCTCAAGTACCCGTGCCGGACACTCGTTACCCAGACATGGGTATG
GACACCATGTCACTTATATAATGCCAACTACAAAAATTTCAAAATATTGC
TTATTTCGACACATGGACATGTGTCCATGTTGGACACTTTTAGTTGAGTC
CGGTTAACATAGTTTATACATAATTTATAAAAGATGTTGCAATTAGGCAG
TGTCTTCTTTTTGCTCATTCACCTTTTTTACCTTATTGTTGTTGGCTTGT
TGCATCCTAATTTTAACCTTAGGTGGTCTTTTGCCTATGACTATCGAAAT
TGAAGCATCATAGAGATATAGCTTATACTTGTACATGACTACTGAATTTA
GGTAATTGAACTTAATCATCAACTCATATATACTTTTAGTTACACTCTCC
CTTCCAACCCAAAATACAGATGAGTGTCCCAGAAATGTTGCTCGGACGTG
CAGTTTCCTTTTATATACATGCATATATGTGTTATAACATACTTCTGTGC
CCTTATATGACAATCACAAACTCAACCTCTACATTTCGCAAAAGACAATA
AAGGGATTTATAATGAATGCGGTTAATCAGAAATCAGAACTCAACTCCAT
TTGTAAGTTGCAATTGTGTGGATGAAGTTTCACTTTCAAATTTTTGTGAA
ATTTTTCTTTGAACTTGATTTTTACTTGGTCATATCAACGTTGAAGGCCA
ATATTATTTCTTTTTCCGGAAAACAAATCTTTGTCCCCTGTCGACTAAGT
AATGTGCACATTCTTACTATTCCTGGGATCATTTCATACCATGATATCAT
GTTTAAAAGAACCATCATTAAATGTTTTAGTTCATTTATTCCCTCCTTTA
AGTGAATTAGTTTTCCCTTAAAGATCCAAGTAGAAACCAGACAGTCCTTT
TGTGTTATGTTGAAGCCTTATGTATGTGTGCAATTCAATCCTATAATAAC
AAAGGTTTTTTTAAAGCATCCATGTAAAAGGTTAAAGAATTAAGAGTATG
CACTGTATTCGGCTCATTTTTGATTTTGTGTCAGGGCCTTAATACTATTG
CATCATGATTTGGTATGATCACTGATTTAGAGTTTGTGGAGATTTTATTT
GTCATCCTTAAAATACATGATTCTCCTTTTCCTTTGACCTGTAATATCAA
TGATCGTCACATATCAAATAGTATCATGGAACTAAGTTAATTCTGATTCA
CACTCATGCCTACTAAATTAAGTACTTTGGTGAATACAGGTGCTATTGTA
TATTGCATGATGACAACATCTTAGGTGCTATATTCAGCATATGGAAAGAG
TTGAGGATGTCACAATCATGGGAGGATGTCGAGGAAGCAGTGTGGGGGGA
ACTAAATAACTATACGGGTTTAACTTAA
Sequence Length:
14728
Sequence Checksum:
d711da8bffb32845403af03541d958ce
View location in JBrowse:
Cds:
>DCAR_019216cds ATGGAGATTGATGAGAGCTCTACAGCTCCGAGAGACCGCAGAATCGACGC TCTAGGCGACCTACGCGTTCTGCCTGATGAAACCTTGTGCTCAATTCTGC TACTGCTCTCTCCTCGCGATGTCGCACGCTTGTCCTGCGTTAGCAGTGTA ATGTATATACTGTGCAATGAAGAACCACTATGGATGGCTCTTTGTTTGAA CAACTTAAACCTTCAGCTTCAGTATAAAGGCTCCTGGAAGAAAACAACAC TACATCAAAGATTATACCGTTGCTATACCACATTGAATGGATTCTCTTTT GACAACGGAAATGTGGAAAGAAAGAGAGACCTCTCTCTAGAAGAGTTTCA TCATGAGTATGACGCTAAGAAACCAGTTTTGATATCTGGACTGGCCAATA CTTGGTCAGCAACACATGCATGGACACCGGATCGGCTTATGGTTGATTAC GGGGACAAAGTGTTTAGAATTTCTCAGAGAAGTTCAAAGAAAGCAAGTAT AAAATTTAGAGATTATATCTCCTACTCGCAGATCCAGCATGATGAGGATC CCCTCTATATATTTGATGACAAGTTTGGGGAAGTTGCACCAGGTCTGCTG AAGGATTACAGCGTGCCTCATTTATTCCAGGAAGATTGGTTTGATGTATT AGAAAGAGACAAAAGGCCCCCTTTTCGATGGCTCATTATTGGGCCTGAGA GATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTAACCAGTGCTTGGAAT ACTCTACTTTATGGTCGTAAAAGGTGGGCACTCTATCCACCAGGAAGAGT ACCATTAGGTGTCACAGTTCATGTAAATGAAGATGATGGTGATGTTAGTA TTGATACTCCAACATCCTTGCAGTGGTGGCTCGATTTTTACCCACTTCTT GCCGATGAAGAAAAGCCGATAGAGTGTACTCAGTTACCTGGAGAAACCAT ATATGTTCCAAGTGGATGGTGGCACTGCGTGCTAAATTTGGAGACCACCG TTGCTGTTACTCAGAACTTTGTGAATTCTAAGAACTTTGAATTTGTTTGT CTGGACATGGCTCCTGGTTATCGACATAAAGGACTCTGTCGTGCAGGATT GCTTGCTCTTGAAGAAAACGCCTTGGAGGTTGTAAAAGAGAATGCTTTGC ATGTTGAAGAAAGTATACTGCGTGATGTGAGACAAACAAGTAATGGGAAG AGAGCCAAAGTGTCGGAGTCTGGGAAGGAACCAAATAGTGAAATTGCTAG GCGTGGTGCCATCAATGTTCATGATGTGTGTAATTTAGAGTTTTCTTACG ATATCAATTTCTTGGCTATGTTTTTAGACAAAGAGAGAGACCACTACAAT GCTTTATGGAGCTCAGGTAACTCTATAGGACAACGAGAACTAAGAGAGTG GTTATGGACGCTTTGGGTTGGAAAACCAGGACATAGAGATTTGATTTGGA AGGGAGCCTGTCTTGCGTTGAATGCTGGTAAATGGTCTGCTTGCATGGGA GCAATTTGTTCCTTCCATGAATTGCAGTTTCCCTCAGATGATGAGAAACT TCCTGTTGGCACAGGCAGCAATCCCGTCTACCTTGTGGCTGATAATGTAA TTAAGATATATGTGGAAGATGGCTTAGAAGCTTCTCTTCATTCGATTGGC ACTGAGCTCGAATTTTACAGTTTATTGTGCGAGTATGGATCCTCTTTGAA AAATCATATTCCTGATGTTCTGGCTAGCGGAATTGTCATCTTCGAAAGGG GATCTTATAAGGTTAAGCCGTGGAATGGTAAAGGCCTTCCAGATATAATG GATGAATGCGATTTGAATCTTGATAATATATCTAGAGATGTTGATTTTCC GTTTGGCATATGGAGCAAAAAACAATTTGAATATAGAAACGCCGGAACAA GCGAGCCGAGTCATTTTCGTGGACACCCAAGTGTATGGCCGTATATTGTC ACAAAAAGATGTAAAGGGAAGCTATTGTCTGAGCTAGCGGATCGAATCTT ATGGGAAGACACCGTAAATCTGGCATCATTTTTGGGAGAACAGCTGCGTA ACCTTCATCTTATGCCCTTTCCACCTCTATGTGATTTGTTCATCAGGGAA AATAATGAATATAAAAAAGATGCCCATTATAATAGTATTTTCAAGAGTGA GACTGACGGAGGTAGCATACCAGCAGAATGGAAAGTTTTTCTTGGAACCC TCAACAAAAAGAGAAAGGATGTTGTTAGCCGCTTGTTTAATTGGGGTGAT CCTATTCCCAAGCTTTTGATAGAACGAGTCCAAGAATACATTCCTGAAGA TTTTGAGAACATCCTCAATATCTTTCAGTGTGGCAAAGGAGTGCCAGAAG TGTGCAGAACTTGTACCTGGATACATGCAGATATAATGGATGACAATATC ATCATGGAACCATCTTCTGTTGGTTCTGGCTCAGGTGACACAACTTCTGG TGGTTTGGGTACGACTTATAGTAAAGGAGAACTGAACTTGTGGCGTCCTA GCCATATTCTTGATTTTGGTAATATGTCAGTAGGCGACCCAATATGCGAT CTGATTCCCTTATACCTTGATGTTTTTAAAGGAGATTCACGTCTTTTAAA GAAATTTCTGGAAAGCTACCAGCTTCCCTTAATGAGTGATGCAGGACAAA AGGAATTATTGAATCAAGACAGCAAGTTTTACAGGACCTCATACCTAGCC ATGTGCTATTGTATATTGCATGATGACAACATCTTAGGTGCTATATTCAG CATATGGAAAGAGTTGAGGATGTCACAATCATGGGAGGATGTCGAGGAAG CAGTGTGGGGGGAACTAAATAACTATACGGGTTTAACTTAA
Pep:
>DCAR_019216pep MEIDESSTAPRDRRIDALGDLRVLPDETLCSILLLLSPRDVARLSCVSSV MYILCNEEPLWMALCLNNLNLQLQYKGSWKKTTLHQRLYRCYTTLNGFSF DNGNVERKRDLSLEEFHHEYDAKKPVLISGLANTWSATHAWTPDRLMVDY GDKVFRISQRSSKKASIKFRDYISYSQIQHDEDPLYIFDDKFGEVAPGLL KDYSVPHLFQEDWFDVLERDKRPPFRWLIIGPERSGASWHVDPALTSAWN TLLYGRKRWALYPPGRVPLGVTVHVNEDDGDVSIDTPTSLQWWLDFYPLL ADEEKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSKNFEFVC LDMAPGYRHKGLCRAGLLALEENALEVVKENALHVEESILRDVRQTSNGK RAKVSESGKEPNSEIARRGAINVHDVCNLEFSYDINFLAMFLDKERDHYN ALWSSGNSIGQRELREWLWTLWVGKPGHRDLIWKGACLALNAGKWSACMG AICSFHELQFPSDDEKLPVGTGSNPVYLVADNVIKIYVEDGLEASLHSIG TELEFYSLLCEYGSSLKNHIPDVLASGIVIFERGSYKVKPWNGKGLPDIM DECDLNLDNISRDVDFPFGIWSKKQFEYRNAGTSEPSHFRGHPSVWPYIV TKRCKGKLLSELADRILWEDTVNLASFLGEQLRNLHLMPFPPLCDLFIRE NNEYKKDAHYNSIFKSETDGGSIPAEWKVFLGTLNKKRKDVVSRLFNWGD PIPKLLIERVQEYIPEDFENILNIFQCGKGVPEVCRTCTWIHADIMDDNI IMEPSSVGSGSGDTTSGGLGTTYSKGELNLWRPSHILDFGNMSVGDPICD LIPLYLDVFKGDSRLLKKFLESYQLPLMSDAGQKELLNQDSKFYRTSYLA MCYCILHDDNILGAIFSIWKELRMSQSWEDVEEAVWGELNNYTGLT*