Resource Type:
Gene
Organism:
Name:
DCAR_019306
Identifier:
DCAR_019306.gene
Locus Tag:
DCAR_019306
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_019306, is a part of gene, DCAR_019306. |
| The genetic_marker, MK005069 K2513, is located in gene, DCAR_019306. |
| The genetic_marker, MK008807 85036.70430, is located in gene, DCAR_019306. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_019306 | DCAR_019306.mRNA | mRNA | DCARv2_Chr5:37833980..37844971 |
Sequence:
ATGTTTACTGAAGGCCTTGACAAATCTGCTCTTCGTTGGGTTAAAGAGGT
AAGATTGTGATATTCATATGTCTGTATTGTGTGTATTATGTGGTTGATGG
GTTTGTAAAATTTGGTCCAGTTTTATGATTTGGAAATTTTCATATTTGAG
TCTCTCTCTCTCTCTCTCTCTGTCTGTCTGTCTGTGTGTGTGTGTGTGTA
AGATTTGTTTATGCATATGTATTTGTGTGGATGATGTATTTTTTAAAATT
TGGTGAAAATTTGTTATCTGGATGCAAAATTGTGTGACTTATGTGAATTT
GTCAACTAGTGAAGGTACTGTGGTTTTTCCCTCTTAGAGTTGTGATATTT
GAATTCGAATTGAATACAGGGTTCTCTGAATAACAAAAAAGAAGTTCCAA
TGTCAATGTCTAGTCAAAGACCTAGGATAGATCCTGTTACTACTGTCAGA
ACTGGTACTAGAGGTTTTGGGTTGCCTCCAACTTCGAAGTTCCGAAGTGG
GCATTTACCGGATAGGATTCCAGTTTCAAGAACTATTCCGCGCCAGTATG
ATGACAGTAGATCAGAATCGGAAAATGATATGAGTACAGATTCAGAGGAG
GGGGTTTATGGAGGGAGGTATTCTTTGGATTCGTCACCGCAGGATGATAG
AGCATCTAGCAATGCAGCAGCTAGAAGGTATTTTAATCCTGCGGAAAGGA
GGGTTCAGTATGGTAGTGATAGTGTGTATTCAGAGGATGTTAGTTCGTCA
AGAGAAACGTTAGGAAGAGGGCGTGGGGTGGTGGTAGACAGGCTGATGAA
GGGTGCAAATAGGTACCCTGTTGGAAGCAATGGCTACACCGAGGAAGAAT
CGTCAGATTCTGCGTGCAGCTCGGAATTCTCATCAACTCAAGTGCCAAGG
AGTGATAAAGGGTTACCCGGTAGCAAGGCATATCTTTCCGAGGGATATGC
TTCTAGTGTGCCTTCATGGATAAACAAGCAATCTGCCTCCAACAAGGTAT
ACTCTGTTTAAGTTTGAATAAATACAACCACTGCATAAACATCTAAACCT
TAGAATTTGATACTAGGTTAGCATTTCCCATTCATAATACCTAATTTCCT
TAAATTTGTTTGAAAAAACGCCAATATAGATTTTTTTAAAAATATATTTT
TGTAGCTTTTGGTGTGAGATATCAAATTGCATTGTTGGTGGCTTGAGCTC
TGTAAGTATTGGTGTAACCATTTGTTTGTATTGTCAAAATGAAAGGGTGC
AGAAATTTAGTGATTTTCATAAATCCTTTCTTTAAATTTCAGCTGTGTGT
AGGTTCTTCAGTCTTTTCATATTCAAGAAATATCACGAATATTTTTATGT
TGCAGATAGGCTTCTTTTGAATACATTTCGGTGTTTGATTAACAGCGTGT
AAAATAGCAGGACAATATTCGTTTATTTGTCAAGATATTTAACTAAACTT
TCTAGAAGTATGGCTTGTGGAAGTGAAGTGGTAATTCTGTATTTGTTATC
GAGCTTTATATTCATAGATGCACTTGTGAAGCATAAGTATTTTTTTTTTT
TATGCCAACACACAGCTTTTTACCACGAGAAATTTGCAGCATATTAATAT
GAAAAATTTGCAGAATCAGAAGCTTTCTGATGATGATAATCCAAGCGCAC
CTCCATTTTCTGATGCTGGTGGGGAGATCAAGCAAGAACCGAGCCCTGCC
TCCAGCAGACCAAATGGCATGCCTTCTGCAGCAGTTGGTTCAGAAACAAA
AACTACAACGGCTACTTTACAGAATAATATCCGCCAGGAGATGCCTAAAA
CGTCTGTGAGGTTTGTATTCTCTCTTGAAAATCAATATTAAAAGAGCTTT
ACAGTGGGAAGCATTTTAGTATGTATATGTTTTCTTTTTATTGTAAGCTG
TATGAAGATATTGCTTGTGTTGTATTTTACAGGACTGCAGCAAGTGCAGA
AAATGGTGTGCCTTCAGGTTCATTTCCAGCTCGGATTCCCACATTTCATG
CAAGGTATAGCTTCTTATGATTCAAGCTAAACAAGTTGCATTTCACTAGT
TGGTTGCAATTTTATTTACTTTATCTCTGCCGTTATTTTTGAATTCTATA
AGGTTTATGTTGTATTTAAAATTTATTGTTTGTATACAGTGCGCTAGGTC
CGTGGCATGCTGTAATAGCATATGATGCATGTGTTCGACTATGCCTTCAT
GCTTGGGCAAAGGGTTGCATGGAAGCACCAATGTTTCTTGAGAATGAATG
TGCACTGTTGAGGAATACGTTTGGGTATGCATTTTTCAATAGTTATTATT
CACTATGCCATTTGTCCAAACAAGCCATCCTTTCTTCGTTTCTATGCTTA
TCCAAAAATTCTTGACGATGATTTCAATATTTTATGAATTGCTGTTGTGA
TGTGTGAATGTTATTTATTGTTAATATTATCTGCATTCCTTGTATTTTTG
TTTCACGTCCAGATTGCAGCAAGTCCTGCTGCAGTCAGAGGAGGAATTGT
TGCTGTCCAAGCGTACTTCAGAACTCGCTGGTGAAGGAGCTATTCCCAAG
CCCAAGAAAATGGTTGGGAAGATGAAGGTGCAAGGTAAGGTAGCGGGGTT
ATCTAGATTTATGTTCTGAGTTGCTATGTCTTGAATAATGGACCGTCTTC
GTTGTGCAGTTCGCAAGGTCAAAATGTCGCTGGACCCCCCTACAGGATGC
AGTTTTTCAAATGTGAGAGCACCAAAGCTTAAGTTGGAAGTTATAAAGGA
CCGCTTCTCCAATTTTCAGTCAACGGTCTCTTCTGGATGGCAAGCAGTCC
GGAGTGTTCATTTTGCACCCAGGGTGGCTGGAAATGGCTCTTTTTCACGC
CAAAGTTTAGCATATGTGCAGGCCAGCACACAATATCTGAAACAAGTATC
TGGACTCCTAAAAACTGGTGTAGCAACTTTGAGAAGTAGTCCATCTTCCT
ATGAAGTTCAAGGTACATACATGGTTCCCATAAAATCCTTATCTCCATTA
GAATATATATTCTATCCAAACTGTATATAAAAGGAGTTCCACCTTAGACT
TTAATGTGAGATCAAATCTATCATGTCGCTTGCTATTGATCGAACCCTAT
ACCTATAAATGATTGTTCTGATGTATTATGGAAATTCTTTGAAACGCAAG
AATCAGAAAATTTTCCGTGGTGGAACAAAATATCCGCCGACTCCCCTTTC
GTCATAGTGAAATGTCTCGAAAAAAATAAAAATAGTGGTTGGGAATGTTA
TAGTAGCCAAAGTCAAAGATAGAAATATAGAAGAGAAACAAACTCATTAT
ATTAATATCTCTGAAAGTTTTATTCATTTTTTGACCACCAATTAATAAGA
CTCCATTTTGATGTGAAAGAATGAGGCTCTTGCTTATAACTACAACTCTC
CTGATCATCTATTCCATGTTACTGTATGTTCCTATTTTTTAATCACACCT
GTAATCCCCTCCGTATTTTCAGTCTCTCCAGGACACTGTTGTGCAACTTA
TTTGCGTCAACTTTATATATTAATGGTTTTGAAGTATTACAAAGGGATTA
ACTAATAATTAACAATCATGCTTCCGTTTGTGTGATTAGAAACATACTCC
AGTTTGCTACGACTGAAAAGTTCAGCTGAAGAGGACGCCATTAGGATGCA
ACCTGGATCTGGTGAAACACATGTATTGTAAGTAGAATTTCTTTCTGCTA
TGAACATTTTGTTATAGCTCTATTGACATCAATGAACTAAACTCTAATGA
CCTTACAGTTTCCCGGATAGTCTAGGAGACGATTTGATTGTTGAAATCCA
GGATTCCACTGGAAAATATTATGGTCGTGTTGTGGCTCAAGTTGCTGCCA
TCTCTGAAGATCCGGTAAAGTTTTTTCCTGCATCTTCAGGGAATGATTTG
CACTTCTGTTGTTTTGATATTTATCACAGTTGGGGACTTGTTCTATGCAG
GGTGACAAACTTCGGTGGTGGTCTATTTTTCGTGAGCCAGAACACGAACT
TGTTGGAAAATTACAGCTTTTTATAAATTACTCAACAACTTTGGATGAGA
ATAGTCATCTTAAGGTGAGGCAATTTTAGGCTTCTTAACGATACATAAAC
TCATGAATAGTATCTGAATTACCTATTAGCAGGTCTGGTTAAACGTGGTC
AAGCTGAAATTAGATCAGGTTTTAAACCTGTTTTAGAGTAAAGTTAGTGC
AAGTTTTAATGCTGTTACTCCACTATTTAGTATTTACAGTTGAGATAAAT
GTCTAGATTACATAGTAAAGTTAGTGCAAGTTTTGATGCTGTTACTCCAC
TATTTAGTATTTACAGTTGAGATAAATGTCTAGATTACATTACTTGGATG
GATAAAGAATATGACTCTCAAGTTATCACACTTCACATGATGAGAAAAAT
GAACCAAAAGGAGGTTTTATGTGGGTAAAAAGGATTATATATATATTTTG
TAATAACACCTAAAATTTTAGACCTACGATTTTATATATACTGAAATTGA
AATTTCCGTCAGAGACACTCCGGTGCATCAGTTCAATATTTTGGGGATGT
GAGTATAATTGAATTACTACTACTTATCGCACCTCTCCTGGTCTCCTTTT
AGGATGAATGCATGTGAATTCAGACAGACTTATTATGTTACTGCTGTTAA
AATCAATGCCTTTTTTTGTAACTTATGTCAAGTAATATATTTATTTTTAA
TTTAAAATTGATATTCTTTTATTGCATCTATAAGACTTTATTTCTCCTGA
TATGGATTAGGTATTCTACAGTTGATCTTATCATCATTAATATTTAGAGC
TCTTTTCTCTTTTGATCTAGTGTGGCTCTGTTGCTGAGACAGTAGCATAT
GATCTAGTACTGGAAGTTGCAATGAAAGATCAACATTTTCAGCAAAGGAA
TCTGTTAGTCCATGGTCCATGGAAGTGGCTGCTCATCGAATTTGCATCAT
ATTTTGGAGTTTCTGATGCATACACTAAACTAAGGTACTCGGATGCTGCT
TGGTTTTTCTTATTAGCGTGTTTCTTATAGCTGCATATTGTTTATCATAG
CAGCGTATTTACCGAGGCAGTTTCTGATAATTAGACCTCTGATACATGTT
TCAGATACCTCTCTTATGTGATGGATGTTGCCACGCCAACTGCAGACTGC
CTTACTCTTGTGCATGATTTATTAATGCCCGTAGTACTGAAGGGAAACTG
TAAGAGCACCCTAAGTCATCAAGAGGTAATCTTGTATCCATGCAAACAAC
TGTTATAGTAGTTTGATTTGAAGTGTTGTTATAGTGCAGCATATAGGCGA
TTTTTTTTAATGTTGTATCCAAATGCTCTGCGTTCTTAAACAAGTTACAA
GCTTTTCCAATTCTTCATGTTATATACATGTTTGCCAGAACCGTATTCTG
GGAGAAATTGAGGATCAGCTCGAACAAGTCTTTGCCCTTGCTTTTGAGAA
TTACAAGTCTCTAGATGAGTCAGCACCATCTGGGATGATGGATGTTTTCA
GGCCTGCTACAGGGAGTGCAGCACCAGCGTTGGAGCCAGCTGTTAAATTG
TACACGCTTCTACATGATATATTATCACCTGAAGCTCAAAACAAACTATA
CAGCTACTTTCAGGTACAAAAGATTACATATACACATACAATTGATTCCT
GTTGTCAGATTTCTGCAATTGTTATAGCTTCTATATATAATCAGGCTGCT
GCAAAAAAGAGAAGTAGAAGGCATTTGACAGATACAGATGAATATGTCAG
CGGGAACAATGAAGGCATGCTGGCTGATGTTGTTTCTATTACAACTGCAT
ATCAGAAAATGAAATCTCTTTGTATGAACATCAGGAATGAGATTTTTACT
GATATAGAGATCCACAATCAACATATACTTCCCAGGTAACTTATATTCTC
TTCAGTTTACTTCATGTGAATGTTAAAGATGAATAAATATTTTAAATTGT
TGACCAGAACTTCACTATGTTTCAATAAATTCATTTTGTATCTTTAGTTA
TTAACACTTGATTTAGGAGGTGATACAATCATCTATTTTCTTTTAGCAAA
ATTTTGCTTCAGTGATTAAATGAAATGTTCAAGGCATATGTTATCAGCTT
ATATTATAATTTTTTGCATATAGCTTAATATTCTTACATAGTTATGTCGA
CCCTGGAAAGTGATAGTAATGTTTTTTCCTGTGGTTGCTAAAGTTCTCTC
CCTCTCTTTTTTATTACTGCAGTTTTATAGACCTGCCCAATCTTTCGACA
GCGATATATAGCGCAGAGTTATGCAACAGACTGCGTTCATTTCTCATTGC
ATGTCCACCATCAGGCCCTTCACCTCATGTAACTGAGCTTGTGATTGCAA
CCGCAGATTTTCAAAGGGATCTGTCTAGCTGGAATATCAAGTAAAATAGT
TTTTGCATATATCTTTAAAATCCTAAAATATCTGCAACATGTCTACTAAT
TATCTTGTTATTTACCAGTCCTGTTAAAGGTGGAGTTGATGCAAAAGAAC
TGTTCCATTTGTACATCATGCTCTGGATTCAAGATAAGCGGCTTGCTTTG
CTCGAGACATGCAAATTAGACAAGGTAAACTTGTCATGTTATCGATCATC
AAAATTTTCAGTTTCATTCTGTGCATGGTTTCTAGTGTACAAAACAGCTG
TTACCTCCTCTAGGTGTTTTTATTGAAGTAACATAGGAGAGGAAGGCTTG
AGAATTTCTCACCTTGTGAAGTGTTGCTATCCTATATGTGAATATCGATT
AAATGGTACCTCCTTGCAGGTTAAATGGTCTGGAGTCAGGACACAGTACT
CAACAACTCCATTTGTAGATGAGATGTATGATCGTTTGCAAGAGATTTTA
AATGATTATGGTGTCATTATTAGTCGCTGGCCAGAATATACTTTTGCTTT
GGAGAATGTAAGTCAGTATGCTTCCTTAACCAAGTGTCTAATCTTTATGC
TCTGTTGCTTAATGTGACTGTGCGTAGTATTAAAGGAGCATTGGCATTTA
ATGCATCTCTGGTTTTGTTTATACGAATACTACTGCTATTAATCCAAATT
TTAGTTGATATCTGAAACAAGCAAGTAATCTTTCTTGATAGGCACAAATG
TGTAACAGAAAGAGTTAAATAAAGAAAAAAGGGAATATGCTAAACTATGT
TCTTTAACAGATACCTGTATCATAGTTACAATTTAGCTAGGGTAAGCATG
TGGTTATAAGTTTCAATCTGGTATTTATTATTTTTAAAAAACAGGCTATT
GCTGACATTGAGAAGGCAGTTGTTGAAGCCCTAGACAAACAGTACGCAGA
TGTTGTATCTCCATTGAAGGAGAACATGGCTCCCAAGAAATTTGGCCTCA
AATATGTGCAGAAGCTAGCTAAACGATCTGTCGGTCTTTATGTGGTGCCT
GAAGAGGTAAGCGTACTTCGGCAAAAGCTCACTAAACATACATATTCTGT
GTATGATTCTGATAAGTTATATATATATATATATATATATTTGAATAATC
ACTTTGATTTTGGTTTTTTCGCTTTGGTTTATATATATATATATATATAT
ATTTATATATGTTTGTCTGCCCTCAAATTTGGTCATTAATGCAGCTTGGC
ATTCTGTTAAACTCAATGAAGAGGATGCTTGATGTTCTCCGCCCAAAAGT
TGAGCATCAACTGAAGTCATGGGGTTCATGCATACCTGATGGAGGAAACA
CAGCTCCTGGAGAGCGTTTAAGTGAAGTGACAGTGATGCTTCGATCCAAG
TTTAGGACTTATTTGCAAGCTGTTGTAGAAAAGCTTGCTGAAAATGTGAG
TATCTTTCTAAATTCAACTGTTTTCCTGATATGGCATTAGTTCAATTTGC
CAAATGTTAAGAACTTAAGATTTAGTATATTAGGTTATTGTATCATCTGC
TAAAAAGTTTGATAAATAGTTGTTTTCTTAATTGAACTGGTAATCTTTCA
TTCTGGTAATAAGAATTGGTCGATCAAAGTTTAGAACTTATTTGCAAGCT
TTTGTAGAAAAGCTTGTAGAATTTGCCATCCAAGAAATTAGATTACTATT
TTAACTGCTAAAAAAGTTTGATCCATAGCTGTTTTTTTAATTGAACTGGT
AAGCTTTTATTGTGGTAATAAGAGTTAATAGTTGTCAGGAACTGATAAGT
TCTGACCTAGTTTCGTTACTATATTTGTTGTTTTCCAAGTTTATAAGTAA
GATAACAGCTTTATAATAGAGAATTAGAGAAGAAATAGGCAGAAACGGAG
ATAAGCAACAGAGTTCAGATAGATCAGAATTAGATGAGAAGAGAAACTTG
AAGAACAAGATAGATTTCTAGAGATCGAAACCCTAGAGAGAAGAGAGAGA
GAATTGTGGAACAAGTTCCATTTTCATATATTCATCATGCATAATAGAAA
ATACAACTGAGTAGATCTATTTATAGACTCTACTAACTTGTAATGAAAGG
ACACAATTACCCTCACTACTACTACTATCCATGCTCATATGTCTATAGAC
TGCTACTTAAGCTGATTCCTGAAAACAGTTAACTAGTCTTGAACACATAA
TTGAAGGTCATCATTTGTAAATGACCTATTTGTATTCCATAGTCATTCAA
CTCTTGCCTTTTGTACATGCTGCAGCTGCACAGTGTTTGCATACTAACTA
GAAATTCACTAATTTGCTGATATCATTTTTCATTTGTACTATTTGGATGT
GTCATTATTGCCATTACTGGTTATTTATCGTTTTGCTAGTTATATAAATT
TATCACTATACTCATTTTTATATTTTGCTTTTCTGTACTGACCTCGACAT
GTTTCACATGTTCCCAGACAAGGTTACAGAGCGGTACAAAACTGAAAAAG
ATTCTCCAAGATTCAAAGGAATGTGTAGGTGAAGCAGACGTAAGAAGCCG
CATGCAACAACTAATAGAGCAGCTTTCAAATACTATAAATCATCTTCATA
GTATTTTTGAAACACATGTATTTGTTGCTATATGTCGGGGTTACTGGGAC
CGGATGGGGCAGGTAAAAACTTACATTTTTAGTTTTTAACTAGCAGTTTT
TCACAATAGTGTTACTCATTTGAGGTCTATTCTGCTACAGGATGTCCTAA
GTTTCCTAGAGAACAGGAAAGAGAATAGGTCTTGGTACAAGGGTTCTCGC
ACTGCAGTATCTGTAAGAGCTTCTCCTTTACTTTTTTGTTCATTTTAATT
ACTTTTTACAACTACATACTGTTCCCAACTCCTAAGCCAGCAGATCATTA
AGGTTTCCATAATTTAGGATAAGTATGCTTCTGTATACCTGTGAATGAAG
TAGGTGTATCTTAAATCTTTTTGAATTTATATCCATATTTTGTTGTTAAA
ATTGTATTTCCATTTACCTTTTTTCCACCCGCCATATAGCTCGACCATAT
ATATTATTTTTGCAAATATGTGATTTGTCAATATATATACATAGTAGTTT
ATAACCCGTGCGATGCAACTGTTACTTGTATTATTTGTTGTTCTAATATT
TAATTTTATTTTGGAGATACTCTTATATTAGAAAAATATGTGTTTTAAAG
TTAAATTAGATTTTTAAATAATTAATAAATGTGTATGGGTTATATATTTT
TATTAAACAAGTTAAATAAGTATTTTTATTGGGCATGTTAAAAGCCTTAT
AAATAAGTAGGCCCGGTAGATATGTTTTGATGATGTTGTTTAAATGTGTT
TCAGTTGCAATAAAAAACACTCATTAATTGATTAAAACATGTTATCATTT
AGAAAGCCCAGGCCCCAATACCAGCTGACCAACCAAAACTAATAGTATAG
TATAGATATGATATCCCCCACCAATTTTATTTTATTATCATTATTTTTTT
GATATATTCTGGACAGTTCGTTCTAAATGATATGCTCAATATTTACTTGG
CATTCTGTTTTAAATTAGTTTGTGATGCATGTTATGTTTCCATGTCTCAG
ATGAGGTATCAAACATGGATGTTTATAAATTTCAGTCTTGCGAGTATATT
CCATGTCTGAGAGTCTAACTTTGTACTTGAAGTGAAATTAAAGATTCAGA
GTAATATAGGATTATGCAGTATACTTGGGACAAATTGCTTTGATTGTAAT
TCTCTATATCTATTTTATTTGATTTGTTGTGTAAGTGACATGATGTATAT
AAACTAGGGTATATCATATGTTGTGATGTTACAAGTGTCACCCATTTGGG
CAAAAAGAAGCCTATTCTTCTGGAAACTGTGCAAGTTAATCGGCAATGCA
TTAAAACAAACTTCAAGTGAATTCAGTGAAAAAATATTTAAAAACTTGTA
TTGGATATAATTGGTGACCTAGCCGTCTATAATTCACTGTGTGCTAAGTA
CATCTCAGCTTCGCCTTCTATAATAAGCAAGAATTTATATAGGATTAGGC
AGTATACTTGGGATTGGGCAGTAATATAGGATTAGGCAGTATACTTGGGA
CAAATTGCTTTGATTTTAATTCTCTATATCTATGCTATTTGATCTGTTGT
GTAAATGACATGATGTATATAGACTAGGTTATATCATATGTTGTGATGTT
ACAAGTGTCACCCATTTGGGCAAAAAGAAGCCTATTCTTCTGGAAACTGT
GCAAGTTAATCGGCAATGCATTAAAACAAACTTTAAATAAATTCAGTGAA
AAAATATTTAAAAACTTGTATTGGATATAATTGGTGACCTAGACGTCTAT
AATTCACTGTGTGCTACATCTCAGCTTGGCCTTCTATAATAAGCAAGAAT
TTATATCCTATACCTCGAGTCTCAAGTCCACACGCCTTCCTGTGTTGCTT
ACTTCGCCTCCGGTTTATCAATTATTTATTGCTTGCAGATCCTGGATGAT
ACTTTTGCATCTCAGCTGCAGCAGCTGCTGGGAAATGCCCTTCAAGAGAA
AGACATAGAACCTCCTAGATCAATCATCGAAGTGCGCTCGATGCTATGCA
AAGACACTGCCAGTCAGAAGGGAAATACTTACTATTATTAG
Sequence Length:
10991
Sequence Checksum:
78baabb290eed7702f83ef70d25a56f5
View location in JBrowse:
Cds:
>DCAR_019306cds ATGTTTACTGAAGGCCTTGACAAATCTGCTCTTCGTTGGGTTAAAGAGGG TTCTCTGAATAACAAAAAAGAAGTTCCAATGTCAATGTCTAGTCAAAGAC CTAGGATAGATCCTGTTACTACTGTCAGAACTGGTACTAGAGGTTTTGGG TTGCCTCCAACTTCGAAGTTCCGAAGTGGGCATTTACCGGATAGGATTCC AGTTTCAAGAACTATTCCGCGCCAGTATGATGACAGTAGATCAGAATCGG AAAATGATATGAGTACAGATTCAGAGGAGGGGGTTTATGGAGGGAGGTAT TCTTTGGATTCGTCACCGCAGGATGATAGAGCATCTAGCAATGCAGCAGC TAGAAGGTATTTTAATCCTGCGGAAAGGAGGGTTCAGTATGGTAGTGATA GTGTGTATTCAGAGGATGTTAGTTCGTCAAGAGAAACGTTAGGAAGAGGG CGTGGGGTGGTGGTAGACAGGCTGATGAAGGGTGCAAATAGGTACCCTGT TGGAAGCAATGGCTACACCGAGGAAGAATCGTCAGATTCTGCGTGCAGCT CGGAATTCTCATCAACTCAAGTGCCAAGGAGTGATAAAGGGTTACCCGGT AGCAAGGCATATCTTTCCGAGGGATATGCTTCTAGTGTGCCTTCATGGAT AAACAAGCAATCTGCCTCCAACAAGAATCAGAAGCTTTCTGATGATGATA ATCCAAGCGCACCTCCATTTTCTGATGCTGGTGGGGAGATCAAGCAAGAA CCGAGCCCTGCCTCCAGCAGACCAAATGGCATGCCTTCTGCAGCAGTTGG TTCAGAAACAAAAACTACAACGGCTACTTTACAGAATAATATCCGCCAGG AGATGCCTAAAACGTCTGTGAGGACTGCAGCAAGTGCAGAAAATGGTGTG CCTTCAGGTTCATTTCCAGCTCGGATTCCCACATTTCATGCAAGTGCGCT AGGTCCGTGGCATGCTGTAATAGCATATGATGCATGTGTTCGACTATGCC TTCATGCTTGGGCAAAGGGTTGCATGGAAGCACCAATGTTTCTTGAGAAT GAATGTGCACTGTTGAGGAATACGTTTGGATTGCAGCAAGTCCTGCTGCA GTCAGAGGAGGAATTGTTGCTGTCCAAGCGTACTTCAGAACTCGCTGGTG AAGGAGCTATTCCCAAGCCCAAGAAAATGGTTGGGAAGATGAAGGTGCAA GTTCGCAAGGTCAAAATGTCGCTGGACCCCCCTACAGGATGCAGTTTTTC AAATGTGAGAGCACCAAAGCTTAAGTTGGAAGTTATAAAGGACCGCTTCT CCAATTTTCAGTCAACGGTCTCTTCTGGATGGCAAGCAGTCCGGAGTGTT CATTTTGCACCCAGGGTGGCTGGAAATGGCTCTTTTTCACGCCAAAGTTT AGCATATGTGCAGGCCAGCACACAATATCTGAAACAAGTATCTGGACTCC TAAAAACTGGTGTAGCAACTTTGAGAAGTAGTCCATCTTCCTATGAAGTT CAAGAAACATACTCCAGTTTGCTACGACTGAAAAGTTCAGCTGAAGAGGA CGCCATTAGGATGCAACCTGGATCTGGTGAAACACATGTATTTTTCCCGG ATAGTCTAGGAGACGATTTGATTGTTGAAATCCAGGATTCCACTGGAAAA TATTATGGTCGTGTTGTGGCTCAAGTTGCTGCCATCTCTGAAGATCCGGG TGACAAACTTCGGTGGTGGTCTATTTTTCGTGAGCCAGAACACGAACTTG TTGGAAAATTACAGCTTTTTATAAATTACTCAACAACTTTGGATGAGAAT AGTCATCTTAAGTGTGGCTCTGTTGCTGAGACAGTAGCATATGATCTAGT ACTGGAAGTTGCAATGAAAGATCAACATTTTCAGCAAAGGAATCTGTTAG TCCATGGTCCATGGAAGTGGCTGCTCATCGAATTTGCATCATATTTTGGA GTTTCTGATGCATACACTAAACTAAGATACCTCTCTTATGTGATGGATGT TGCCACGCCAACTGCAGACTGCCTTACTCTTGTGCATGATTTATTAATGC CCGTAGTACTGAAGGGAAACTGTAAGAGCACCCTAAGTCATCAAGAGAAC CGTATTCTGGGAGAAATTGAGGATCAGCTCGAACAAGTCTTTGCCCTTGC TTTTGAGAATTACAAGTCTCTAGATGAGTCAGCACCATCTGGGATGATGG ATGTTTTCAGGCCTGCTACAGGGAGTGCAGCACCAGCGTTGGAGCCAGCT GTTAAATTGTACACGCTTCTACATGATATATTATCACCTGAAGCTCAAAA CAAACTATACAGCTACTTTCAGGCTGCTGCAAAAAAGAGAAGTAGAAGGC ATTTGACAGATACAGATGAATATGTCAGCGGGAACAATGAAGGCATGCTG GCTGATGTTGTTTCTATTACAACTGCATATCAGAAAATGAAATCTCTTTG TATGAACATCAGGAATGAGATTTTTACTGATATAGAGATCCACAATCAAC ATATACTTCCCAGTTTTATAGACCTGCCCAATCTTTCGACAGCGATATAT AGCGCAGAGTTATGCAACAGACTGCGTTCATTTCTCATTGCATGTCCACC ATCAGGCCCTTCACCTCATGTAACTGAGCTTGTGATTGCAACCGCAGATT TTCAAAGGGATCTGTCTAGCTGGAATATCAATCCTGTTAAAGGTGGAGTT GATGCAAAAGAACTGTTCCATTTGTACATCATGCTCTGGATTCAAGATAA GCGGCTTGCTTTGCTCGAGACATGCAAATTAGACAAGGTTAAATGGTCTG GAGTCAGGACACAGTACTCAACAACTCCATTTGTAGATGAGATGTATGAT CGTTTGCAAGAGATTTTAAATGATTATGGTGTCATTATTAGTCGCTGGCC AGAATATACTTTTGCTTTGGAGAATGCTATTGCTGACATTGAGAAGGCAG TTGTTGAAGCCCTAGACAAACAGTACGCAGATGTTGTATCTCCATTGAAG GAGAACATGGCTCCCAAGAAATTTGGCCTCAAATATGTGCAGAAGCTAGC TAAACGATCTGTCGGTCTTTATGTGGTGCCTGAAGAGCTTGGCATTCTGT TAAACTCAATGAAGAGGATGCTTGATGTTCTCCGCCCAAAAGTTGAGCAT CAACTGAAGTCATGGGGTTCATGCATACCTGATGGAGGAAACACAGCTCC TGGAGAGCGTTTAAGTGAAGTGACAGTGATGCTTCGATCCAAGTTTAGGA CTTATTTGCAAGCTGTTGTAGAAAAGCTTGCTGAAAATACAAGGTTACAG AGCGGTACAAAACTGAAAAAGATTCTCCAAGATTCAAAGGAATGTGTAGG TGAAGCAGACGTAAGAAGCCGCATGCAACAACTAATAGAGCAGCTTTCAA ATACTATAAATCATCTTCATAGTATTTTTGAAACACATGTATTTGTTGCT ATATGTCGGGGTTACTGGGACCGGATGGGGCAGGATGTCCTAAGTTTCCT AGAGAACAGGAAAGAGAATAGGTCTTGGTACAAGGGTTCTCGCACTGCAG TATCTATCCTGGATGATACTTTTGCATCTCAGCTGCAGCAGCTGCTGGGA AATGCCCTTCAAGAGAAAGACATAGAACCTCCTAGATCAATCATCGAAGT GCGCTCGATGCTATGCAAAGACACTGCCAGTCAGAAGGGAAATACTTACT ATTATTAG
Pep:
>DCAR_019306pep MFTEGLDKSALRWVKEGSLNNKKEVPMSMSSQRPRIDPVTTVRTGTRGFG LPPTSKFRSGHLPDRIPVSRTIPRQYDDSRSESENDMSTDSEEGVYGGRY SLDSSPQDDRASSNAAARRYFNPAERRVQYGSDSVYSEDVSSSRETLGRG RGVVVDRLMKGANRYPVGSNGYTEEESSDSACSSEFSSTQVPRSDKGLPG SKAYLSEGYASSVPSWINKQSASNKNQKLSDDDNPSAPPFSDAGGEIKQE PSPASSRPNGMPSAAVGSETKTTTATLQNNIRQEMPKTSVRTAASAENGV PSGSFPARIPTFHASALGPWHAVIAYDACVRLCLHAWAKGCMEAPMFLEN ECALLRNTFGLQQVLLQSEEELLLSKRTSELAGEGAIPKPKKMVGKMKVQ VRKVKMSLDPPTGCSFSNVRAPKLKLEVIKDRFSNFQSTVSSGWQAVRSV HFAPRVAGNGSFSRQSLAYVQASTQYLKQVSGLLKTGVATLRSSPSSYEV QETYSSLLRLKSSAEEDAIRMQPGSGETHVFFPDSLGDDLIVEIQDSTGK YYGRVVAQVAAISEDPGDKLRWWSIFREPEHELVGKLQLFINYSTTLDEN SHLKCGSVAETVAYDLVLEVAMKDQHFQQRNLLVHGPWKWLLIEFASYFG VSDAYTKLRYLSYVMDVATPTADCLTLVHDLLMPVVLKGNCKSTLSHQEN RILGEIEDQLEQVFALAFENYKSLDESAPSGMMDVFRPATGSAAPALEPA VKLYTLLHDILSPEAQNKLYSYFQAAAKKRSRRHLTDTDEYVSGNNEGML ADVVSITTAYQKMKSLCMNIRNEIFTDIEIHNQHILPSFIDLPNLSTAIY SAELCNRLRSFLIACPPSGPSPHVTELVIATADFQRDLSSWNINPVKGGV DAKELFHLYIMLWIQDKRLALLETCKLDKVKWSGVRTQYSTTPFVDEMYD RLQEILNDYGVIISRWPEYTFALENAIADIEKAVVEALDKQYADVVSPLK ENMAPKKFGLKYVQKLAKRSVGLYVVPEELGILLNSMKRMLDVLRPKVEH QLKSWGSCIPDGGNTAPGERLSEVTVMLRSKFRTYLQAVVEKLAENTRLQ SGTKLKKILQDSKECVGEADVRSRMQQLIEQLSNTINHLHSIFETHVFVA ICRGYWDRMGQDVLSFLENRKENRSWYKGSRTAVSILDDTFASQLQQLLG NALQEKDIEPPRSIIEVRSMLCKDTASQKGNTYYY*