DCAR_019708 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_019708

Identifier:

DCAR_019708.gene

Locus Tag:

DCAR_019708

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_019708, is a part of gene, DCAR_019708.
The genetic_marker, MK006065 K3509, is located in gene, DCAR_019708.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_019708	DCAR_019708.mRNA	mRNA	DCARv2_Chr5:41160672..41169845

Sequence:

ATGTTCTCTCCGGGCACAAAGAGAGCCAAGCCGCGCCCAACTACACAGCC
ACCCGAAGCTGCCTCGCCGCACACACCACACCACATTGCTAACCGCCCTT
CCACCGGCACTCCCGCCCCCTGGGCCTCCCGCCTCTCCGTCCTCGCCAGG
TACTACTACTTCCCACATCACACATTTTCGATATTCGAATACTCGATAAA
CGAATAAACTCGATTAATATGATCCGTGTTTCATATGTTTAAACTCGATT
AATGAATAATTCGGACAAATTAGTTATATCTCCGGTCCCCAGGGTGTGCG
GTTATCGAGGTTCAGTTGTGCATTATTCTGCTTTGTTTATACACAACTAA
TTACAGGCTCCTTCTGAGTTTGTCTCTGTAGTGATGTTTGTTTGTACTCA
CTTAAACAAGTTGTTTTTAGAGCCTAAAACGTGATTTTAAGGACTGTAAG
CTGTTTAGAATGCAAATGCTGAGATTATTTTACAAACGCCTTATTTTTTA
ATTGACTTGCTATTCACTAGGTCAACGTAATTGATTAGAAATGGATAGCG
TAGAAAGCCTCCAGAGAACTAGATGGGTTAATCTGACGGTCTTTTTTCAT
GGAAATAAGGACTTATTTCGAAATATTTTTTTACATATACATAATATACT
TTAGTGCTTGTTTGGTTGACATCTAGATACTTGAGAAGTAGAAATTCCTA
GGAAGTAGTATCCGATGAAATTGTTTGGTTGACATTAGTTGGGAAAGTGT
AAGTTCCTCGGAACTTTAAATACCTACAAATCAAGGGAAGTTATTCACCT
AGACCCCCCTTGGTAACTTGCACTTCGTGTAGGAAGTTAAAACCTGTCTA
TCAACCAAACACAAATTTTAACTTCCCATTTATTATAATTTCCATGGTGA
TTTCAAATTACATAGGAATTAACTTCCTATTGGTAACCAAACAAGCACTT
AGTATATAGGGATGGCAGAAAAAACCGATCTGAATGGATACCCGACCGTT
TCGACCCGAATGGATCTTACCGAACCCGATATTTTGGATTTGGATTTGGA
TTTGGATCTGATTTTTAGACCCGAACGAGTTTGGATTTGGATTTGGATAC
TAGGTATTCCGTATCGAAACCCGACCCGAAATCCGAATCCGATCCAAACC
CGATCCAAACCTGAAACCCGAAAAAAAATCCAAATATATATATATATACA
TATATATATATATATGTATGTATGTATGTATGTATGTATGTATGCATGTA
TCTATACTAATATAGTTTTTTTTCAACTTTAAATCTACTAAATTTTGTTT
ATATATATATATAGGTAGAGTGTGAATGTGTATACTCCTGGGTTATAGTG
ACATTTTTTGTTTAACTAATGAGTTACTTTAAAATTTCATACTCCATATA
GTGGAGATTTGTGTTTAGAAATTATTAAATAGAAATTATTAAATACGGTT
CAAGATTTTATTAATGTGTAATACTTTATTATTAAAGTAGTTTAGTTTTA
AATATAATGAAATTTAAGTGTGAAAAAATCAAAAATAATATTTTTACAAT
ACTATATAAATTTCGGGATTGAGGTTTTGGATAAACCCGAACCCGATCCG
AAACCCGTGGATTTGGATTTGGATTTGATATGTGAAACCCGATTGGATTT
GGATTTGGATTTGGATTTTAAAAATAATTTGGATTTGGATTTGGATATCT
CAAATATCCGAAACGATCCAACCCGTTGCCATCCCTATTAGTATAACATA
TATAATGAGTTAGGTTCTATGGAGTCTACATTTAAGCTAGTGTCTTGGAG
TACCAGTCATAATCTTTAAGTTTAATCATAAATAATGGGCATGTTTGGGT
AAATAATTTAAGAGCTTATGAAGGACTTATTTTTTTATTTTTTTTAAAAA
TACATATATTTGTAATTCTTTTGGATATAAATGTTAAGAAGGTGTTTAAT
ATTCATTATATGGGGAAAAAATTAAGGTTCATTTCAGAAAAAAGTAGAGT
TTCATGTATTTTTCTCCAGAAATAAGCCCTTATTTCTGAAAAATAAGTTT
AGCCAAACGGGCACAATATCTTTGATCATTCAAATTTATATATGATTAAT
CATATATAAGTAGTCTTAAACATAATTATCAGTTAATCATTAACATCTTT
CAACTTTAACAATCGTTAAAATCATTGTTCTTCTTATGAGTTATATTGTA
GAACATAGTGTTCTGCGATTTGTAAAAGTAATTGTTCTACCTTTTGATTA
CAACGATTATGTTGTAGAAAATAATCTGTAGGTTGTCCGATGTTTACAAA
TATTGTAGAACAGAAAAAAAATGAAAATTGAAATGACTAGATTATATTTT
ATTAAATTTTGGACTCTGATACTCCAATGTTTTGTAGACTCTATAGAACT
TGGACCCATATATAACAGTGGTTTAACATTCTGTATTTGCAGAAATAAGT
TACTTCTATTCAGAAAAAAGTATACTACATTAATGTACTTTTTTCAGAAA
CTAGTGACTTATTTCTGAAAAATAAGTTAAGCTGAATGGGGCCTACGTTA
GTGATAAATATACTTTTCTTTTATTTTTTTGCTCAGATATTATAGTGCAG
CACAGAAATCCTTTTTAATGCCTTTTGTGGCTCGTTACACAGGATTTCAC
CAGGGAAGAAAAGTGACAAGGATGACGAGGATCCAAATAAGCCTGTATAT
GTTGGAGAGTTTCCTGAAGTAGTTCGCAATGAGCAAGCTAATCTAATGCA
CAAGCAGTTGCATGGTTTATAGTTTTTGCACTTTTTTCCACCTTTTGTTC
AAAGTTGTGAATTGTTTCGTTTGGCTAACCTTTGTCTTCTCTGTCAGGTG
ATGCATTTAACTCTGGCGGGATTGACAAGGCGACATCCTTGGCATGGATT
ATTTGTGGAAGCAAAATTTTTATATGGGAGTACTTGGCGTCCGCTAAATC
TAGAAAATGTGTCGTGCTTGATATTCCCTCAACTGTATCAGATATTAGAG
GTTCAAGCATAAATTCGAGACTTGGGAATAACTGGTCACTTTGTATTATT
ATTAGGGATAGCATGCATAAGAGTAGAAGTAAATCTCTAAAACAGTACAG
CTCTGTTGGTGTTATATTGTGTCATCTGAAAAGTCGAGCCGTAGTGTATT
GGGCAAACATCTATTCTGAAGGAACAACCTCTCCTGTCACAAGTATTGAC
AATACAGAAGCAAATTTTTCGCCTGGTCAACAGAAAACGGGTTCAAACTA
TTACAACTCTTTTATTGCTTCTGCTGCCACTTATCCATCTAATGTCTGTC
TGGCTCTTGCTTGTAGCTCTAGTGGTGATATTTGCCAATTCATCTGTAGC
CCTAATGGTATCGAGCGTAAGGTGGCTATTCATAATGTCTTAGGGTTATC
CCTCCAAGGAAGTGATATCAACCAAGTCAACAGAAGTAAGGGATATCCGA
GGTCATTAACTTGGCACTTTGCTAATCATTCTTTGGAAGAAACCGAAAGA
CAATTTCTTTTGTTGACAGACCATGAGTTACAATGTTTTACTGTCAACCT
TAATAATTTTTATGAAGTTTCAAAGCGCTGGTCGCATGAAATAATTAGCC
CTGATGGTGATCTAGGTATTAAGAAGGGTCTGGCTGGTCAGAAGCGAATT
TGGCCTTTGGACCTGCAACTCGACAATTCTGGAAAAATAATTACTGTTCT
TATTGCCACTTTCTGCAAGGATCGGGTCACCAGTTCAAGTTTCATAGAGT
ACTCTCTTCTGACCATGCAATATAAATCTGGGCCAAGAATTTCGTCAGAA
AGCACTGAGCAAACAGATGAGAATGTTTTGGAGAAAAAAGCTCCTCTTCA
AGTAATTATACCAAAAGCAAGAGTGGAGGATGAGGATATCTTATTTTTAA
TGAGATTAAAGGTTGGTGGTAAACCGTCTGGGTCTGCAATCATACTTTCT
GGTGACGGTACTTCTACAGTCTCACATTACTGGAGAGATTCCACACGGCT
TTATCAGTTTGATCTACCCTATGATGCTGGGAAAGTTCTTGATGCTTCAG
TCTTGCCTTCAGATGATGGTGATGACGGACCATGGGTCGTTCTCACTCAG
AAAGCTGGATTATGGGCAATTCCTGAAAAGGCGGTTTTGCTTGGAGGTGT
TGAACCGCCAGAGCGAAGTTTGTCACGGAAAGGAAGTTCTAATGAAGGAT
CTGCACAAGTGGAAAGGAGAAACTTTCCCTTTTCCGGTAATATTGTCCCC
AGAAGGGCTACTTCTGAAGCATGGGATGCTGGAGACAAACAAAAAGCAGT
GTTTACGGGGATCACACATAGAACTGCTCAAGATGAGGAATCAGAAGCTT
TACTGAATGTTCTTTTCAATGATTTTCTTTTATCAGGTCAGGTTACTGGT
GCATTCGACAAGCTAAATAGTTCCAGGGCATTTGAAAGGGATGGAGAAAC
AAGTGTTTTCACTAGGCTCAGCAAATCAATTGTTGACACCTTAGCCAAGC
ATTGGACAACTACTAGAGGTGCTGAGTTCGTGGCTCTATCTGTTGTTTCC
AACCAACTCATTGATAAGCAGCAAAAGCATCAGAAATTTCTACAGTTCCT
TGCATTATCAAAATGCCACGAGGAACTGTGTTCTAAACAGAGTATAAGTT
TTTTCCTACTTATTATTTATTATGTCAGTATCTTTTTCTATTTCTTATTT
CCCTCGATGCTAAGCACTGATTGTTGCTCATACTATCGTATTATCGCTAA
TGCATAATTATATGAACTTTTTATGCAAATTAGGTGATTTAAGTGTGTTA
ATCATTTATCGCAACCAAATATAGTTGCACGGAATATGTGGGCAACCCCG
TGCGAGTTACAATCAACTTACAGCAGCATCCTGTAGATTAGATTGGCACA
AACTTTTCATCATGGAATCGCACTCACTAATTTGGACCTGAATACTAATA
TGATTGATGATATATATATATTTACTCAGAAATAGTTTTTTGTATTTATT
CTGATGGTTTCTGGTTTTTTAGTCCATTGCTGAGGTGCTAAGATGAATGC
ATTATATTTTAATTACTTTCTCTTAGTTAAGATATTATAAGCCACACTTG
TCCTAAATGAAACAATAATAATGCCTATAGGGCTTCAAAGAAGAAACAGT
AGGGCCTATAAATGCTTATTAACATCTGCATCAGACTCTGTAGGTGAAAG
AAAAAGGTTCTTAACTTCCCTTCTATTTCCGTACATGATTTATGGTTACA
TAGGCATGGTTTTTTTGAATTTTATAATTTTATACTATTTTTAGGACAAT
CATTGCAATTTATAATGGAACATGGTGAAAAACTTTCTGCTGTGATTCAT
CTGAAGGAGTTGCAGAACAACATTAGCCACCGCTCAAGTGGACTTGGCGG
TACTTACTCTACAATGGAAAATAAAGTTTCTGGTCCACTTTGGGATCTGA
TTCAGTTAGTTGGAGAGAAATTGCGAAGGAATACTGTCCTCCTGATGGAT
AGGGACAATGCCGAAGTCTTTTACAGTAAAGTTTCTGAACTTGAAGAAGT
ATATAGTTGCTTAGATAGACATCTGGAGTTTATAATTACTGAGGAGATGC
AACTACCTGTTCAGTTCGAACGAGCTTGCGAATTGTCAAATGCGTGTGTA
CTCTTAGTTCGCACGGCATTGAATTACAGAAATGAGTATCACATGTGGTA
TCCATCTCCTGAGGGTTTGACACCATGGTATTGTCGAACTGTTGTACGAA
GTGGGCTTTGGAGCATTGCATCTTTCCTGCTTCAGATCTCAAATGAATCA
AATCGCCTTGACAGGCCCAAAAGGTTGGAGTTTTATAGTAACTTAGAAGT
TCTGGCTGAAGTGCTACTTGAGGCATATTCTGGTGCGATAACAGCAAAAA
TCGATCTGAAAGAAGACAACTTAGGTCTACTAAATGAGTATTGGAGTAGA
AGAGACACACTTTTTAGCTCACTTTATCGGCAAGCAAAAAGTTTTGTTGA
ACCCAGTTACCAGGTAAATTTCGACTTTCAGTTTTCTTCTTTGGAAAGTT
TTGTTATGAAAGCATTTTTTTACTTGTACAGTGGGCCATGATGTAAAATT
TGGTACGCTATAAGCTTTAGAAATTGATGATCGCTACTGCACTTGACTCT
TTCCTTTTTAGAATATAAAAAAAAACAGTAGTGATTTTCATTTGCGTCTT
AGTAGCTAGAGTCTATGATTTTTATAGTGTTTGGTTGGTTTTTTAGGAAA
ATAATTTCTGCACTGTAGGCAAGATCATTGACACTCCTGGGACGTGTCAC
ATTCAAGGTTTTTATAATCTCCATTCATCTCACCACTTTCCTTGACACAA
TAGTTCATGTCATTCACTTGTATGGTGAAGAGATTATGCATCAGATCTAG
GCCTAGTGGTGATGTAGTTAGTTTGTGGAAAATTATATTGTTGACTGCTG
TCACATATTGTTATATCATCTAGTTAATTTGGGGGACCGATGTATGCATC
TCCTGTGTACCAGTGGCCAAGTCTTTTAATATGTACTCTTGAGATGTTTG
AATATATGTATTGGTGTGGTTGCTTCTCTTGACAGATTAGTAATTATAAT
CCTTTAATTTTTCAATGCTATTTTTTGGTTCCTATTGGAAATCTGATGCC
AATTGCAATAACACGCAATTCTTGTAGTACTTCATTGTTTATTGTTCACC
ATATATTGTCTGACATATAATGGAGGCCATTGCTTTTGTGGCACCGGATA
TGAGGATTTGGCAGATACAGAGACCAGTGTTCTTGAAGTTGGGATATAAA
GAAATTGGATTTTATTTTATAAGTGGTGGTAATGTGGGGATTGTGAAAAC
TGTTTTGGTTACTGTCAACTAACTTGAATCTATGAATAGGATGACGTAAC
AAATGAGCCGCTAACAGATCCATTTACCTAATTATTTTCTTTTGTCAACG
ACTCAACGTCCTTCTCCGTTTCCCTCCACCCTGAAGTGGTCTGCTATATT
TAGAAAAGATGTTAAAGTCGTCGTGGTATGGTGATAAATTTAGGGCAATA
TGTAATCTTCTAAACAAGTTCTTCCTTTTTGCAGGATTTGAGTGAAGGAG
ATGAAGAGCAGGGTGAGGAGATATTCAGACAGCTGTCTTCTCGTTTATTG
TCAATTGCTAACCGCCATGAGGGTTATCAAACACTGTGGACTATATGTTG
TGATCTCAATGATTCAGACCTTCTTAGAAGTTATATGGTATCATCCCAAA
AAGTTCTGCTTCAACTTGCATACTGGTTTTCCTCTAACCTTCTCATTTTT
CTCATTAATCTCTTAATTTACAGCATGAGAGCATGGGGCCAAAGGGAGGG
TTTAGCTACTATGTTTTTGAGCAACTGTACAATAATAAACAATTTTCCAA
GCTAATTAAACTTGGGGAAGAGTTTCCAGAAGAGTTGCTTACTTTCCTAA
AGCTTCATAATGACCTCCTCTGGCTTCATCAGTTGTTCGTTCATCAATTT
TCCGCTGCCTCTGAAACTCTCCATAAACTGGCTTTTTCTCAAAATGCTGG
CTTTAGTCCAGAAAGTGAGGTGCTTGAATCTCATCATCCAGTTATAGAAC
CTACACTGGCAGACAGGAAACGTTTTCTGAATCTATCAAAGATAGCTGCA
TTGGCAGGTTTTTGCTTCTGAACTAATGCTTTTCTCTTACTTGATCTCTT
TGCTACTTATCTAGGATCTAAGACTGCCCTCCTGGGCTTGTCATATAATG
ATTCTGCTTGGCATGAAATTTGAGAGGATTAATCGGTTTAGTGGCATTAA
AGTTGCATTATATATCTGAAAATAGTGTGCTGATAAAGTATATAAAGTGT
AATAAATATTCGTCATTGTAATACTTTAATCTTAATTCTCTGCTCAAAAC
TGTTGATATATACTCAAAATCCCTCAGGTAAGTCTGCTGATTATGACACA
AAGTTAAAGCGGATTGAAGCTGATTTGAAGCTTCTGAAATTGCAGGTATG
CTGCATATAAAAAATGGGTCTGCTCTTAAATGCATTTCTAAACTATATAC
CTGTTTTCAGTTTCCGTAGAAGTTGCACAGATTATGTGTTTCATGGCATC
TATATTTGTTATCCAAGGAATTATATTCTTATGGCTAAGGAGGTGCTACA
CCATGTACTGATTTTTATGGTCATTTTCAGAATAATAGAGCATAAGTAAA
CACTTTCATGGCTAACAGAACACATCAACATCCCATAAAAAATACTGTAT
TATTTTGTACATAGCATACCTCCAACTTAAAAAGAATTTAGTGAACAATG
CACAAATAAATTACTTTTTTTTTAATTCGTAATTGCTGTAATTACTTGTC
ATATCTGATATTTTTTTAATGTGCTCTTTGTTCACAGCCAATAATCTTCA
GTATGAATGCTGTTAGGTTCTTAAGCTGCTTACAACTTTTCTAGTTGTTT
TTAGTTTTCAGTCTTTTGTTGAGTATTTAATTACTTGTACTCCCTTTATG
AACGTTGTTAGAAATTGTTTTTGACAACGTGGCACACCTCCCTTTTGCAT
AAAAAACCTACATATCCTAATAAGTTTGTAGAGTGACATTTTTGACGATC
TTTGTTTATGTTCGACTATTTTAGGAAGAAATATTAAAACTCCTTCCTGA
GAATGAAGAAACACGGAAGATTGGAGAGCGGCTTCTTCCTTCACTTGAGC
TTATTCAATTGTGCCTTGGAAGTCAGCATCGAGAACTTTCTATTTGGGCT
TTTGATGTTTTTGCTTGGTCTACATCATTTTTCATTAAATCCAACGCAAG
CCTACTGGAGGAGTGCTGGAGGAATGCTGCTAATGAGGATGAATGGGGGG
AAATTTATCAAACTTCTATGAGTGAAGGCTGGAGTGAGGAAGAAACCCAC
GAGTATCTTAAAGAAACTATCCTTTTCCAAGCTTCTCGGAGGTGCTATGG
ACCCAATGCAGCAACTTTTGAAGGAGGTTTCGAGGAAGTGCTTCCTCTGA
GACAAGAGAATACTGATTCTTTTTCTTTAAAAGAAACAGGTTCTGTTGAA
GCAATCCTTATGCAGCACAAGGATTTTCCTGAAGCAGGGAAGTTGATGCT
GACTGCTATCATGCTGGGAACTTTTCATGCTGATTTGACGGTGGAAGGGA
GTCCTTCTCCAATGGAGGGATAG

Sequence Length:

9173

Sequence Checksum:

8cab36219626e2366def10665503eb4c

View location in JBrowse:

DCARv2_Chr5:41160673..41169845-

Cds:

>DCAR_019708cds ATGTTCTCTCCGGGCACAAAGAGAGCCAAGCCGCGCCCAACTACACAGCC ACCCGAAGCTGCCTCGCCGCACACACCACACCACATTGCTAACCGCCCTT CCACCGGCACTCCCGCCCCCTGGGCCTCCCGCCTCTCCGTCCTCGCCAGG ATTTCACCAGGGAAGAAAAGTGACAAGGATGACGAGGATCCAAATAAGCC TGTATATGTTGGAGAGTTTCCTGAAGTAGTTCGCAATGAGCAAGCTAATC TAATGCACAAGCAGTTGCATGGTGATGCATTTAACTCTGGCGGGATTGAC AAGGCGACATCCTTGGCATGGATTATTTGTGGAAGCAAAATTTTTATATG GGAGTACTTGGCGTCCGCTAAATCTAGAAAATGTGTCGTGCTTGATATTC CCTCAACTGTATCAGATATTAGAGGTTCAAGCATAAATTCGAGACTTGGG AATAACTGGTCACTTTGTATTATTATTAGGGATAGCATGCATAAGAGTAG AAGTAAATCTCTAAAACAGTACAGCTCTGTTGGTGTTATATTGTGTCATC TGAAAAGTCGAGCCGTAGTGTATTGGGCAAACATCTATTCTGAAGGAACA ACCTCTCCTGTCACAAGTATTGACAATACAGAAGCAAATTTTTCGCCTGG TCAACAGAAAACGGGTTCAAACTATTACAACTCTTTTATTGCTTCTGCTG CCACTTATCCATCTAATGTCTGTCTGGCTCTTGCTTGTAGCTCTAGTGGT GATATTTGCCAATTCATCTGTAGCCCTAATGGTATCGAGCGTAAGGTGGC TATTCATAATGTCTTAGGGTTATCCCTCCAAGGAAGTGATATCAACCAAG TCAACAGAAGTAAGGGATATCCGAGGTCATTAACTTGGCACTTTGCTAAT CATTCTTTGGAAGAAACCGAAAGACAATTTCTTTTGTTGACAGACCATGA GTTACAATGTTTTACTGTCAACCTTAATAATTTTTATGAAGTTTCAAAGC GCTGGTCGCATGAAATAATTAGCCCTGATGGTGATCTAGGTATTAAGAAG GGTCTGGCTGGTCAGAAGCGAATTTGGCCTTTGGACCTGCAACTCGACAA TTCTGGAAAAATAATTACTGTTCTTATTGCCACTTTCTGCAAGGATCGGG TCACCAGTTCAAGTTTCATAGAGTACTCTCTTCTGACCATGCAATATAAA TCTGGGCCAAGAATTTCGTCAGAAAGCACTGAGCAAACAGATGAGAATGT TTTGGAGAAAAAAGCTCCTCTTCAAGTAATTATACCAAAAGCAAGAGTGG AGGATGAGGATATCTTATTTTTAATGAGATTAAAGGTTGGTGGTAAACCG TCTGGGTCTGCAATCATACTTTCTGGTGACGGTACTTCTACAGTCTCACA TTACTGGAGAGATTCCACACGGCTTTATCAGTTTGATCTACCCTATGATG CTGGGAAAGTTCTTGATGCTTCAGTCTTGCCTTCAGATGATGGTGATGAC GGACCATGGGTCGTTCTCACTCAGAAAGCTGGATTATGGGCAATTCCTGA AAAGGCGGTTTTGCTTGGAGGTGTTGAACCGCCAGAGCGAAGTTTGTCAC GGAAAGGAAGTTCTAATGAAGGATCTGCACAAGTGGAAAGGAGAAACTTT CCCTTTTCCGGTAATATTGTCCCCAGAAGGGCTACTTCTGAAGCATGGGA TGCTGGAGACAAACAAAAAGCAGTGTTTACGGGGATCACACATAGAACTG CTCAAGATGAGGAATCAGAAGCTTTACTGAATGTTCTTTTCAATGATTTT CTTTTATCAGGTCAGGTTACTGGTGCATTCGACAAGCTAAATAGTTCCAG GGCATTTGAAAGGGATGGAGAAACAAGTGTTTTCACTAGGCTCAGCAAAT CAATTGTTGACACCTTAGCCAAGCATTGGACAACTACTAGAGGTGCTGAG TTCGTGGCTCTATCTGTTGTTTCCAACCAACTCATTGATAAGCAGCAAAA GCATCAGAAATTTCTACAGTTCCTTGCATTATCAAAATGCCACGAGGAAC TGTGTTCTAAACAGAGACAATCATTGCAATTTATAATGGAACATGGTGAA AAACTTTCTGCTGTGATTCATCTGAAGGAGTTGCAGAACAACATTAGCCA CCGCTCAAGTGGACTTGGCGGTACTTACTCTACAATGGAAAATAAAGTTT CTGGTCCACTTTGGGATCTGATTCAGTTAGTTGGAGAGAAATTGCGAAGG AATACTGTCCTCCTGATGGATAGGGACAATGCCGAAGTCTTTTACAGTAA AGTTTCTGAACTTGAAGAAGTATATAGTTGCTTAGATAGACATCTGGAGT TTATAATTACTGAGGAGATGCAACTACCTGTTCAGTTCGAACGAGCTTGC GAATTGTCAAATGCGTGTGTACTCTTAGTTCGCACGGCATTGAATTACAG AAATGAGTATCACATGTGGTATCCATCTCCTGAGGGTTTGACACCATGGT ATTGTCGAACTGTTGTACGAAGTGGGCTTTGGAGCATTGCATCTTTCCTG CTTCAGATCTCAAATGAATCAAATCGCCTTGACAGGCCCAAAAGGTTGGA GTTTTATAGTAACTTAGAAGTTCTGGCTGAAGTGCTACTTGAGGCATATT CTGGTGCGATAACAGCAAAAATCGATCTGAAAGAAGACAACTTAGGTCTA CTAAATGAGTATTGGAGTAGAAGAGACACACTTTTTAGCTCACTTTATCG GCAAGCAAAAAGTTTTGTTGAACCCAGTTACCAGGATTTGAGTGAAGGAG ATGAAGAGCAGGGTGAGGAGATATTCAGACAGCTGTCTTCTCGTTTATTG TCAATTGCTAACCGCCATGAGGGTTATCAAACACTGTGGACTATATGTTG TGATCTCAATGATTCAGACCTTCTTAGAAGTTATATGCATGAGAGCATGG GGCCAAAGGGAGGGTTTAGCTACTATGTTTTTGAGCAACTGTACAATAAT AAACAATTTTCCAAGCTAATTAAACTTGGGGAAGAGTTTCCAGAAGAGTT GCTTACTTTCCTAAAGCTTCATAATGACCTCCTCTGGCTTCATCAGTTGT TCGTTCATCAATTTTCCGCTGCCTCTGAAACTCTCCATAAACTGGCTTTT TCTCAAAATGCTGGCTTTAGTCCAGAAAGTGAGGTGCTTGAATCTCATCA TCCAGTTATAGAACCTACACTGGCAGACAGGAAACGTTTTCTGAATCTAT CAAAGATAGCTGCATTGGCAGGTAAGTCTGCTGATTATGACACAAAGTTA AAGCGGATTGAAGCTGATTTGAAGCTTCTGAAATTGCAGGAAGAAATATT AAAACTCCTTCCTGAGAATGAAGAAACACGGAAGATTGGAGAGCGGCTTC TTCCTTCACTTGAGCTTATTCAATTGTGCCTTGGAAGTCAGCATCGAGAA CTTTCTATTTGGGCTTTTGATGTTTTTGCTTGGTCTACATCATTTTTCAT TAAATCCAACGCAAGCCTACTGGAGGAGTGCTGGAGGAATGCTGCTAATG AGGATGAATGGGGGGAAATTTATCAAACTTCTATGAGTGAAGGCTGGAGT GAGGAAGAAACCCACGAGTATCTTAAAGAAACTATCCTTTTCCAAGCTTC TCGGAGGTGCTATGGACCCAATGCAGCAACTTTTGAAGGAGGTTTCGAGG AAGTGCTTCCTCTGAGACAAGAGAATACTGATTCTTTTTCTTTAAAAGAA ACAGGTTCTGTTGAAGCAATCCTTATGCAGCACAAGGATTTTCCTGAAGC AGGGAAGTTGATGCTGACTGCTATCATGCTGGGAACTTTTCATGCTGATT TGACGGTGGAAGGGAGTCCTTCTCCAATGGAGGGATAG

Pep:

>DCAR_019708pep MFSPGTKRAKPRPTTQPPEAASPHTPHHIANRPSTGTPAPWASRLSVLAR ISPGKKSDKDDEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGID KATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLG NNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGT TSPVTSIDNTEANFSPGQQKTGSNYYNSFIASAATYPSNVCLALACSSSG DICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFAN HSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKK GLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYK SGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKP SGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPSDDGDD GPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNF PFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDF LLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAE FVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGE KLSAVIHLKELQNNISHRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRR NTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERAC ELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFL LQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGL LNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLL SIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNN KQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAF SQNAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKL KRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRE LSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWS EEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKE TGSVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPMEG*